FvH4_3g24230

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017629
Physical Location & Seq
Forward (+)
17221297 .. 17224563
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24230.t1

Sequence Viewer

Length: 2190 bp
ATGCATGGCAAAGGTTTGCTGTTTACAAGCTGGGGTGTTCACCTGGTTGGTCTGCCTCGTGATGGTGGTGATCAAGATGAAGAAGATGACAGTGATCATCGCCATGAGCAAGAGCAATCGATTTCCTTGTCCACAGAAGCAACAAATAATCTCCAAATGACAGCCGCAATAATGAAGATGAAGATGATGATGATGAGACGCAAGAGCATAACCCACCGCCACAAAATAAAATTCATCCTGGCTCGTCTTTACCCTCACAACCACGCCAAGCTCACTCACCTCCTCCTACGATGCACCTCCCTCCTCACAACCCGCCACCTCTTCCAAATCCAATCCCACCTCACCACCAACCCCATCCCCTCCATCGACCCCAACATCCTCGCCGTCAAGCTCATCGCCGCCTTCGCTCACTTGGCCAACACCCGCCACTTGTCCCTCATTTTCCGCCACTTCCTCGAAACCCCCAACATCTTCGCCTACAACGCCCTCCTCAAAGCCTTTGCCCAAAACAACGACTGGCACCACACCATTCTCTACTTTAATTCCCAACTGCTTTCGCCTAATGCCCCCACCCCGGATGAGTACACCTTCACCTCTGTGCTCAAGGCCTGCGCCGGCCTTCTCCGGGTGACCGAGGGTGGGAAGGTCCACTGCCTTGTCACTAAATTCGGTTGCGAGGAGAATCTCTTTGTAAGAAACTCGCTTACTGACATGTATTTTAAGTTCGGGAAGGTTGGGGTTGCACAGAAGCTGTTCGACGAAATGCGTGTGAGAGATGTGGTTTCGTGGAACACGTTGGTTGCTGGGTATTGCGTCAGTGGGGAGGTTGGTGAGGCTAGGAGGGTGTTTGACGGCATGGTTGAGAAGAGTTCGTTTTCTTGGTCAACGATGATCAGTGCCTATGCCAAGTTGGGGGAGTTGGAGGAAGCGCAGCGGCTTTTTGATGCGGTGCCGCAGAGGAATGTGGTTTCGTGGAATGCAATGATTGCTGGGTATGCACAGAATGAGAAGTATGATGAGGCGGTTGGGTTGTTTAGGGAAATGCAAGAGTGTGGGTTGGCGCCGAATGATGTTACGCTGGTTAGTGTGTTGTCTGCTTGCGCTCATCTTGGGGCGCTTGATTTGGGGAAGTGGATTGATAGGTTTATAAAGCGAAGCGGGATGGACTTGGGCCTGTTTTTGGGGAATGCGTTAGCGGATATGTATGCCAAGTGCGGCTGCATAACTGAAGCTAGGCGGGTTTTCAACAACATGCAGGAGAGGGATGTGATATCATGGAGTATTATCATCACTGGGTTGGCCATGAATGGGCATGCTGATCAAGCTTTCGAGTGTTTTGATAAGATGATTGAACATGGGTTGAAGCCGAATGAAATTACGTTTATGGGCTTATTGACAGCATGTACTCATGCAGGTCTGGTTGACAAGGGACTTGAGTATTTTAATATGATGGAGAAAGCATTTGGAATATCTCCCAAGATTGAGCATTATGGATGTGTTGTTGATCTTCTCAGCCGTGCCAGTCGCCTTGCTAAAGCAGAGGATATGATCAATTCCATGCCTATGAAGCCTAATGTTATAGTCTGGGGTGCATTGCTTGGTGGTTGTCGGACTTATAAAGACACTGATAGAGGGGAGCGTGTTGTTCGGCGGATTTTAGAACTAGATTCTGAGCACTCTGGAAGCTACATTTACCTTGCAAACCTGTATGCTTCAATGGGAAGGCTTGATGATGCAGCACAGTGTAGACTGAGAATGCGAGATAAAGGCGTAACAAAAACACCTGGCTGCAGTTGGATAGAGGTGGATCACATTGTTTATGAATTCTTCATGGGAGATTTATCACATCCCCAGTCAGACAAAATATATTCAATGATTAGGGAACTGAGGTGGAAAATGAAGCTAGCGGGATACAAACCAAGGACAGATTTGGTGCTCCAGAACATAGACGAAGAAGAGAAAGAGGATGCTTTATCTGTTCATAGTGAGAAGCTGGCCATTGCATTTGGGCTTATCAGTACTAGTCCAGGAACTACAATTCGAATTGTAAAGAACTTGCGAATTTGTAATGACTGTCATGACGCGACAAAGTTAATCTCCAAAATTGTTGAACGAGAGATTATCGTACGAGACCGCAGTCGCTTCCATCATTTCAAAGATGGTAAATGTTCTTGCAATGACTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

730

Amino Acids

82.55

Weight (kDa)

7.35

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 258 - 289 5.3e-06 PPR repeat family
PPR_1 PF12854 258 - 287 6.3e-07 PPR repeat
PPR PF01535 261 - 289 2.8e-06 PPR repeat
PPR PF01535 292 - 319 3.8e-06 PPR repeat
PPR_2 PF13041 320 - 369 7.8e-14 PPR repeat family
PPR_1 PF12854 320 - 349 6.6e-06 PPR repeat
PPR PF01535 323 - 353 4.2e-10 PPR repeat
PPR_2 PF13041 421 - 469 2.6e-11 PPR repeat family
E_motif PF20431 539 - 601 5.1e-17 E motif
DYW_deaminase PF14432 637 - 729 2.8e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24230
malus_domestica MD15G1089600.v1.1
prunus_persica Prupe.1G444200_v2.0.a1
pyrus_communis pycom15g08400
rosa_chinensis RchiOBHm_Chr5g0043351
rosa_laevigata RLG00000034182
rosa_multiflora Rmu_sc0000060.1_g000011 Rmu_sc0000060.1_g000039
rosa_roxburghii Rroxscaffold_1G00037500
rosa_rugosa Rorug05G0205400
rosa_samantha Rh5CG327400
rosa_wichuraiana Rw5G027000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1148, 1617
Acc36I ACCTGC 1 cut(s) 1403
AccB1I GGYRCC 3 cut(s) 519, 949, 1060
AccI GTMKAC 1 cut(s) 1747
AccII CGCG 1 cut(s) 2084
AclWI GGATC 1 cut(s) 1815
AcoI YGGCCR 3 cut(s) 414, 1299, 1995
AcsI RAATTY 4 cut(s) 230, 665, 1823, 2061
AcuI CTGAAG 1 cut(s) 1248
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 4 cut(s) 584, 1405, 2020, 2127
AfiI CCNNNNNNNGG 7 cut(s) 62, 574, 625, 639, 912, 1180, 1308
AflIII ACRYGT 2 cut(s) 711, 792
AgsI TTSAA 7 cut(s) 1246, 1352, 1363, 1716, 1872, 2111, 2155
AhlI ACTAGT 1 cut(s) 2021
AjnI CCWGG 4 cut(s) 42, 237, 1783, 2026
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 9 cut(s) 30, 271, 391, 751, 1232, 1325, 1686, 1903, 1993
AluI AGCT 9 cut(s) 30, 271, 391, 751, 1232, 1325, 1686, 1903, 1993
Alw21I GWGCWC 3 cut(s) 603, 1677, 1938
Alw26I GTCTC 2 cut(s) 190, 2124
AlwI GGATC 1 cut(s) 1815
AlwNI CAGNNNCTG 1 cut(s) 751
AoxI GGCC 6 cut(s) 414, 606, 616, 1171, 1299, 1995
ApeKI GCWGC 4 cut(s) 931, 1218, 1736, 1788
ApoI RAATTY 4 cut(s) 230, 665, 1823, 2061
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 5 cut(s) 614, 931, 1063, 1103, 1117
AspS9I GGNCC 2 cut(s) 646, 1171
AsuC2I CCSGG 2 cut(s) 575, 626
AsuHPI GGTGA 7 cut(s) 32, 80, 269, 334, 583, 640, 842
AsuII TTCGAA 1 cut(s) 2041
AsuNHI GCTAGC 1 cut(s) 1903
AvaII GGWCC 1 cut(s) 646
BalI TGGCCA 3 cut(s) 416, 1301, 1997
BanI GGYRCC 3 cut(s) 519, 949, 1060
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 603, 1677, 1938
BbvI GCAGC 4 cut(s) 943, 1205, 1748, 1775
BccI CCATC 7 cut(s) 56, 362, 371, 1156, 1444, 2153, 2154
BceAI ACGGC 3 cut(s) 368, 868, 1500
BciT130I CCWGG 4 cut(s) 44, 239, 1785, 2028
BciVI GTATCC 1 cut(s) 1904
BclI TGATCA 5 cut(s) 70, 94, 891, 1318, 1548
BcnI CCSGG 2 cut(s) 575, 626
BcoDI GTCTC 2 cut(s) 190, 2124
BcuI ACTAGT 1 cut(s) 2021
BfaI CTAG 5 cut(s) 837, 1233, 1664, 1904, 2022
BfmI CTRYAG 1 cut(s) 1789
BfoI RGCGCY 2 cut(s) 1064, 1118
BfuAI ACCTGC 1 cut(s) 1403
BfuI GTATCC 1 cut(s) 1904
BisI GCNGC 9 cut(s) 165, 399, 932, 935, 953, 1216, 1219, 1737, 1789
BlsI GCNGC 9 cut(s) 166, 400, 933, 936, 954, 1217, 1220, 1738, 1790
BmcAI AGTACT 1 cut(s) 2020
Bme1390I CCNGG 6 cut(s) 44, 239, 575, 626, 1785, 2028
Bme18I GGWCC 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 646, 1171
BmiI GGNNCC 3 cut(s) 521, 951, 1062
BmrFI CCNGG 6 cut(s) 44, 239, 575, 626, 1785, 2028
BmrI ACTGGG 2 cut(s) 1302, 1846
BmsI GCATC 4 cut(s) 281, 934, 1723, 1957
BmtI GCTAGC 1 cut(s) 1907
BmuI ACTGGG 2 cut(s) 1302, 1846
BoxI GACNNNNGTC 1 cut(s) 2136
BpmI CTGGAG 1 cut(s) 1922
Bpu14I TTCGAA 1 cut(s) 2041
BpuEI CTTGAG 2 cut(s) 587, 1454
BpuMI CCSGG 2 cut(s) 575, 626
Bsa29I ATCGAT 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 2124
BsaJI CCNNGG 3 cut(s) 573, 633, 1919
Bsc4I CCNNNNNNNGG 7 cut(s) 62, 574, 625, 639, 912, 1180, 1308
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 5 cut(s) 521, 1297, 1521, 1852, 2189
Bse3DI GCAATG 4 cut(s) 987, 1592, 1998, 2182
BseBI CCWGG 4 cut(s) 44, 239, 1785, 2028
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 573, 633, 1919
BseGI GGATG 9 cut(s) 234, 354, 375, 583, 1167, 1270, 1499, 1846, 1972
BseLI CCNNNNNNNGG 7 cut(s) 62, 574, 625, 639, 912, 1180, 1308
BseMI GCAATG 4 cut(s) 987, 1592, 1998, 2182
BseMII CTCAG 4 cut(s) 1525, 1662, 1742, 1877
BseNI ACTGG 5 cut(s) 521, 1297, 1521, 1852, 2189
BseRI GAGGAG 4 cut(s) 272, 293, 479, 692
BseXI GCAGC 4 cut(s) 943, 1205, 1748, 1775
BseYI CCCAGC 3 cut(s) 30, 803, 989
Bsh1236I CGCG 1 cut(s) 2084
BshFI GGCC 6 cut(s) 416, 608, 618, 1173, 1301, 1997
BshNI GGYRCC 3 cut(s) 519, 949, 1060
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 3 cut(s) 603, 1677, 1938
BsiSI CCGG 3 cut(s) 575, 615, 625
BsiWI CGTACG 1 cut(s) 2125
BslFI GGGAC 2 cut(s) 418, 1443
BslI CCNNNNNNNGG 7 cut(s) 62, 574, 625, 639, 912, 1180, 1308
BsmAI GTCTC 2 cut(s) 190, 2124
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 418, 1443
BsmI GAATGC 3 cut(s) 982, 1192, 1761
BsnI GGCC 6 cut(s) 416, 608, 618, 1173, 1301, 1997
Bso31I GGTCTC 1 cut(s) 2124
Bsp119I TTCGAA 1 cut(s) 2041
Bsp1286I GDGCHC 3 cut(s) 603, 1677, 1938
Bsp143I GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
BspANI GGCC 6 cut(s) 416, 608, 618, 1173, 1301, 1997
BspCNI CTCAG 4 cut(s) 1524, 1663, 1743, 1878
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 1 cut(s) 2084
BspHI TCATGA 1 cut(s) 2077
BspLI GGNNCC 3 cut(s) 521, 951, 1062
BspMAI CTGCAG 1 cut(s) 1793
BspMI ACCTGC 1 cut(s) 1403
BspOI GCTAGC 1 cut(s) 1907
BspPI GGATC 1 cut(s) 1815
BspT104I TTCGAA 1 cut(s) 2041
BspT107I GGYRCC 3 cut(s) 519, 949, 1060
BspTNI GGTCTC 1 cut(s) 2124
BsrDI GCAATG 4 cut(s) 987, 1592, 1998, 2182
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 5 cut(s) 521, 1297, 1521, 1852, 2189
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 573, 633, 1919
BssMI GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
BssNI GRCGYC 1 cut(s) 1061
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 1919
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 4 cut(s) 44, 239, 1785, 2028
Bst4CI ACNGT 3 cut(s) 92, 1743, 2075
Bst6I CTCTTC 3 cut(s) 326, 860, 1950
BstACI GRCGYC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 986
BstBI TTCGAA 1 cut(s) 2041
BstC8I GCNNGC 6 cut(s) 610, 616, 1099, 1314, 1905, 1995
BstDEI CTNAG 4 cut(s) 1511, 1671, 1751, 1886
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 9 cut(s) 234, 354, 375, 583, 1167, 1270, 1499, 1846, 1972
BstFNI CGCG 1 cut(s) 2084
BstH2I RGCGCY 2 cut(s) 1064, 1118
BstHHI GCGC 5 cut(s) 614, 931, 1063, 1103, 1117
BstKTI GATC 7 cut(s) 73, 97, 894, 1321, 1507, 1551, 1810
BstMAI GTCTC 2 cut(s) 190, 2124
BstMBI GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
BstMWI GCNNNNNNNGC 7 cut(s) 404, 413, 482, 986, 995, 1322, 1567
BstNI CCWGG 4 cut(s) 44, 239, 1785, 2028
BstNSI RCATGY 4 cut(s) 715, 1255, 1316, 1404
BstPAI GACNNNNGTC 1 cut(s) 2136
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 6 cut(s) 42, 237, 573, 624, 1783, 2026
BstSFI CTRYAG 1 cut(s) 1789
BstUI CGCG 1 cut(s) 2084
BstV1I GCAGC 4 cut(s) 943, 1205, 1748, 1775
Bsu15I ATCGAT 1 cut(s) 119
BsuI GTATCC 1 cut(s) 1904
BsuRI GGCC 6 cut(s) 416, 608, 618, 1173, 1301, 1997
BsuTUI ATCGAT 1 cut(s) 119
BtgZI GCGATG 2 cut(s) 83, 379
BtsCI GGATG 9 cut(s) 234, 354, 375, 583, 1167, 1270, 1499, 1846, 1972
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 7 cut(s) 97, 649, 823, 901, 1290, 1623, 1748
BveI ACCTGC 1 cut(s) 1403
Cac8I GCNNGC 6 cut(s) 610, 616, 1099, 1314, 1905, 1995
CaiI CAGNNNCTG 1 cut(s) 751
CciI TCATGA 1 cut(s) 2077
CfoI GCGC 5 cut(s) 614, 931, 1063, 1103, 1117
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 646, 1171
ClaI ATCGAT 1 cut(s) 119
CseI GACGC 3 cut(s) 207, 802, 2090
CsiI ACCWGGT 1 cut(s) 42
Csp6I GTAC 4 cut(s) 583, 1404, 2019, 2126
CviQI GTAC 4 cut(s) 583, 1404, 2019, 2126
DdeI CTNAG 4 cut(s) 1511, 1671, 1751, 1886
DinI GGCGCC 1 cut(s) 1062
DpnI GATC 7 cut(s) 72, 96, 893, 1320, 1506, 1550, 1809
DpnII GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
EaeI YGGCCR 3 cut(s) 414, 1299, 1995
Eam1104I CTCTTC 3 cut(s) 326, 860, 1950
EarI CTCTTC 3 cut(s) 326, 860, 1950
EciI GGCGGA 2 cut(s) 434, 1666
Eco130I CCWWGG 1 cut(s) 1919
Eco147I AGGCCT 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 2124
Eco32I GATATC 1 cut(s) 1272
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 1248
Eco91I GGTNACC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 1823
EcoRII CCWGG 4 cut(s) 42, 237, 1783, 2026
EcoRV GATATC 1 cut(s) 1272
EcoT14I CCWWGG 1 cut(s) 1919
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 1062
EheI GGCGCC 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1919
Esp3I CGTCTC 1 cut(s) 190
FaqI GGGAC 2 cut(s) 418, 1443
FauI CCCGC 5 cut(s) 320, 431, 1151, 1230, 1900
FbaI TGATCA 5 cut(s) 70, 94, 891, 1318, 1548
FblI GTMKAC 1 cut(s) 1747
Fnu4HI GCNGC 9 cut(s) 165, 399, 932, 935, 953, 1216, 1219, 1737, 1789
FokI GGATG 9 cut(s) 221, 341, 362, 590, 1174, 1277, 1506, 1833, 1979
Fsp4HI GCNGC 9 cut(s) 165, 399, 932, 935, 953, 1216, 1219, 1737, 1789
FspBI CTAG 5 cut(s) 837, 1233, 1664, 1904, 2022
GlaI GCGC 5 cut(s) 613, 930, 1062, 1102, 1116
GluI GCNGC 9 cut(s) 165, 399, 932, 935, 953, 1216, 1219, 1737, 1789
GsaI CCCAGC 3 cut(s) 34, 807, 993
GsuI CTGGAG 1 cut(s) 1922
HaeII RGCGCY 2 cut(s) 1064, 1118
HaeIII GGCC 6 cut(s) 416, 608, 618, 1173, 1301, 1997
HapII CCGG 3 cut(s) 575, 615, 625
HgaI GACGC 3 cut(s) 207, 802, 2090
HhaI GCGC 5 cut(s) 614, 931, 1063, 1103, 1117
Hin1I GRCGYC 1 cut(s) 1061
Hin6I GCGC 5 cut(s) 612, 929, 1061, 1101, 1115
HinP1I GCGC 5 cut(s) 612, 929, 1061, 1101, 1115
HincII GTYRAC 2 cut(s) 885, 1423
HindII GTYRAC 2 cut(s) 885, 1423
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 2 cut(s) 682, 1667
HpaII CCGG 3 cut(s) 575, 615, 625
HphI GGTGA 7 cut(s) 32, 80, 269, 334, 583, 640, 842
Hpy166II GTNNAC 8 cut(s) 24, 40, 132, 585, 649, 885, 1423, 1748
Hpy188I TCNGA 3 cut(s) 1611, 1672, 1858
Hpy188III TCNNGA 6 cut(s) 59, 74, 727, 1680, 1939, 2078
Hpy8I GTNNAC 8 cut(s) 24, 40, 132, 585, 649, 885, 1423, 1748
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 6 cut(s) 412, 598, 629, 637, 724, 1716
HpyCH4III ACNGT 3 cut(s) 92, 1743, 2075
HpyCH4IV ACGT 2 cut(s) 794, 1379
HpyF10VI GCNNNNNNNGC 7 cut(s) 404, 413, 482, 986, 995, 1322, 1567
HpyF3I CTNAG 4 cut(s) 1511, 1671, 1751, 1886
HpySE526I ACGT 2 cut(s) 794, 1379
Hsp92I GRCGYC 1 cut(s) 1061
HspAI GCGC 5 cut(s) 612, 929, 1061, 1101, 1115
KasI GGCGCC 1 cut(s) 1060
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Ksp22I TGATCA 5 cut(s) 70, 94, 891, 1318, 1548
Kzo9I GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
LmnI GCTCC 2 cut(s) 1636, 1941
Lsp1109I GCAGC 4 cut(s) 943, 1205, 1748, 1775
LweI GCATC 4 cut(s) 281, 934, 1723, 1957
MabI ACCWGGT 1 cut(s) 42
MaeI CTAG 5 cut(s) 837, 1233, 1664, 1904, 2022
MaeII ACGT 2 cut(s) 794, 1379
MaeIII GTNAC 4 cut(s) 628, 658, 1072, 1771
MalI GATC 7 cut(s) 72, 96, 893, 1320, 1506, 1550, 1809
MboI GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
MhlI GDGCHC 3 cut(s) 603, 1677, 1938
MlsI TGGCCA 3 cut(s) 416, 1301, 1997
MluNI TGGCCA 3 cut(s) 416, 1301, 1997
Mly113I GGCGCC 1 cut(s) 1061
MmeI TCCRAC 3 cut(s) 900, 1589, 1775
Mox20I TGGCCA 3 cut(s) 416, 1301, 1997
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 752
MscI TGGCCA 3 cut(s) 416, 1301, 1997
MseI TTAA 4 cut(s) 540, 720, 1443, 2093
MslI CAYNNNNRTG 3 cut(s) 102, 596, 1562
Msp20I TGGCCA 3 cut(s) 416, 1301, 1997
MspA1I CMGCKG 1 cut(s) 934
MspI CCGG 3 cut(s) 575, 615, 625
MspR9I CCNGG 6 cut(s) 44, 239, 575, 626, 1785, 2028
Mva1269I GAATGC 3 cut(s) 982, 1192, 1761
MvaI CCWGG 4 cut(s) 44, 239, 1785, 2028
MvnI CGCG 1 cut(s) 2084
MwoI GCNNNNNNNGC 7 cut(s) 404, 413, 482, 986, 995, 1322, 1567
NaeI GCCGGC 1 cut(s) 616
NarI GGCGCC 1 cut(s) 1061
NciI CCSGG 2 cut(s) 575, 626
NdeII GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
NgoMIV GCCGGC 1 cut(s) 614
NheI GCTAGC 1 cut(s) 1903
NlaIV GGNNCC 3 cut(s) 521, 951, 1062
NmuCI GTSAC 2 cut(s) 628, 658
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 4 cut(s) 715, 1255, 1316, 1404
NspV TTCGAA 1 cut(s) 2041
OliI CACNNNNGTG 1 cut(s) 596
PaeI GCATGC 1 cut(s) 1316
PagI TCATGA 1 cut(s) 2077
PceI AGGCCT 1 cut(s) 608
PciI ACATGT 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 791
PctI GAATGC 3 cut(s) 982, 1192, 1761
PdiI GCCGGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 2 cut(s) 682, 1667
Pfl23II CGTACG 1 cut(s) 2125
PfoI TCCNGGA 1 cut(s) 2026
PkrI GCNGC 9 cut(s) 166, 400, 933, 936, 954, 1217, 1220, 1738, 1790
PluTI GGCGCC 1 cut(s) 1064
PscI ACATGT 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 2136
PsiI TTATAA 2 cut(s) 1148, 1617
Psp6I CCWGG 4 cut(s) 42, 237, 1783, 2026
PspEI GGTNACC 1 cut(s) 628
PspFI CCCAGC 3 cut(s) 30, 803, 989
PspGI CCWGG 4 cut(s) 42, 237, 1783, 2026
PspLI CGTACG 1 cut(s) 2125
PspN4I GGNNCC 3 cut(s) 521, 951, 1062
PspPI GGNCC 2 cut(s) 646, 1171
PsrI GAACNNNNNNTAC 2 cut(s) 707, 739
PstI CTGCAG 1 cut(s) 1793
PstNI CAGNNNCTG 1 cut(s) 751
RsaI GTAC 4 cut(s) 584, 1405, 2020, 2127
RsaNI GTAC 4 cut(s) 583, 1404, 2019, 2126
RseI CAYNNNNRTG 3 cut(s) 102, 596, 1562
SaqAI TTAA 4 cut(s) 540, 720, 1443, 2093
SatI GCNGC 9 cut(s) 165, 399, 932, 935, 953, 1216, 1219, 1737, 1789
Sau3AI GATC 7 cut(s) 70, 94, 891, 1318, 1504, 1548, 1807
Sau96I GGNCC 2 cut(s) 646, 1171
ScaI AGTACT 1 cut(s) 2020
ScrFI CCNGG 6 cut(s) 44, 239, 575, 626, 1785, 2028
SduI GDGCHC 3 cut(s) 603, 1677, 1938
SexAI ACCWGGT 1 cut(s) 42
SfaNI GCATC 4 cut(s) 281, 934, 1723, 1957
SfcI CTRYAG 1 cut(s) 1789
SfoI GGCGCC 1 cut(s) 1062
SfuI TTCGAA 1 cut(s) 2041
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 3 cut(s) 102, 596, 1562
SmlI CTYRAG 2 cut(s) 602, 1433
SmoI CTYRAG 2 cut(s) 602, 1433
SpeI ACTAGT 1 cut(s) 2021
SphI GCATGC 1 cut(s) 1316
SseBI AGGCCT 1 cut(s) 608
SspDI GGCGCC 1 cut(s) 1060
SspMI CTAG 5 cut(s) 837, 1233, 1664, 1904, 2022
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 6 cut(s) 42, 237, 573, 624, 1783, 2026
StyI CCWWGG 1 cut(s) 1919
TaaI ACNGT 3 cut(s) 92, 1743, 2075
TaiI ACGT 2 cut(s) 797, 1382
TaqI TCGA 6 cut(s) 119, 366, 456, 756, 1329, 2041
TaqII GACCGA 1 cut(s) 647
TatI WGTACW 3 cut(s) 582, 1403, 2018
TauI GCSGC 5 cut(s) 167, 401, 937, 955, 1218
TfiI GAWTC 2 cut(s) 682, 1667
Tru1I TTAA 4 cut(s) 540, 720, 1443, 2093
Tru9I TTAA 4 cut(s) 540, 720, 1443, 2093
TscAI CASTG 7 cut(s) 97, 656, 823, 901, 1297, 1630, 1748
TseFI GTSAC 2 cut(s) 628, 658
TseI GCWGC 4 cut(s) 931, 1218, 1736, 1788
Tsp45I GTSAC 2 cut(s) 628, 658
TspRI CASTG 7 cut(s) 97, 656, 823, 901, 1297, 1630, 1748
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 4 cut(s) 230, 665, 1823, 2061
XceI RCATGY 4 cut(s) 715, 1255, 1316, 1404
XmiI GTMKAC 1 cut(s) 1747
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 5 cut(s) 837, 1233, 1664, 1904, 2022
ZrmI AGTACT 1 cut(s) 2020
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.