Rroxscaffold_1G00037500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017629
Physical Location & Seq
Reverse (-)
54655160 .. 54657378
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037500.1

Sequence Viewer

Length: 1812 bp
ATGGCCGTCAAGCTCATCGGTGCGTTCGCCCATTTCGCCAACACTCGCCACTTGGCCCTCATATTCCACCACTATCTCCAAACCCCAAACATCTTCGCCTACAATGCCCTCCTCAAGGCCTTTGCTCAGAACAATGACTGGCACCACACCATTCTCTACTTCAATTCCCAATTGCTTTCGCTGAATGCTCCCAGCCCAGATGAGTACACCTTCACCTCTGTGCTCAAGGCCTGCGCCGGCCTCGCCCGAGTGACTGAGGGAGCGAAAGTCCACTGCCTCGTCACTAAATTCGGGTGCGAGGCCAATCTCTTTGTTAGAAATTCGCTGACTGACATGTACTTTAAGTTTGGGAGGTTTACGATTGCGCAGAAGCTGTTCGATGAAATGCGTGTGAGAGATGTCGTTTCGTGGAACACCTTGGTTGCTGGGTATTGCGTGAGTGGGGAGGTTGGTGAGGCGAGGAGGGTGTTTGACGGCATGGTAGAGAAGACTTTGTTTTCTTGGTCGACTATGATCAGTGCGTATGCTAAGTTGGGTGAGTTGGAGGAAGCGAGGCGGCTTTTTAATGAGATGCCGCAGAGGAATGTGGTTTCGTGGAATGCGATGATTGCTGGGTATGCACAGAATGAGAAGTATGCTGAGGCTGTTGGGTTGTTTAGGGAAATGCAAGAGGGTGGGTTGGCGCCAAATGATGTTACGCTTGTTAGTGTGTTGTCTGCTTGCGCTCATCTTGGGGCACTTGATTTGGGGAAGTGGATTGATAGGTTTATAAAGCGAAGCGGGATGGAGTTGGGTCTGTTTTTGGGGAATGCTTTAGCGGATATGTATGCCAAGTGTGGCTGCATAACCGAAGCTAGGCTGGTTTTCAATAACATGCATGAGAGGGATGTGATATCTTGGAGTGTTATCATTACTGGGTTGGCCATGAATGGGCATGCTGATGAAGCTTTCGAGTGTTTTGGTAAGATGATTGAACACGGTTTGAAGCCAAATGAAATTACGTTTATGGGGTTATTGACAGCATGTACTCATGTTGGTTTGGTAGACAAGGGGCTTGAGTATTTTGATATGATGGAGAAAGCATGTGGAATATCTCCCAAGATTGAGCACTATGGGTGTTTGGTTGATCTTCTCAGCCGTGCTGGTCGCCTTGCTAAAGCAGAGGATATGATCAATTCCATGCCTATGAAGCCTAATGTTATAGTCTGGGGTGCATTGCTCGGTGGTTGTCAGATTTATAAAGATACTGATAGAGGGGAGCGTGTTGTTCAGCAGATTCTTGAACTAGATTCTGAGCACTCTGGAAGCTATGTTTATCTTGCAAATCTGTATGCTTCGATGGGAAGGCTTGATGATGCAGCACAGTGTAGACTGAGCATGCGAGATAAAGGCGTAACAAAAACACCTGGCTGCAGTTGGATAGAGGTGGATAACATAGTTCATGAATTCTTCATGGGAGATTTATCGCATCCTCAGTTGGACAAAATATATTCTATGATTAAAGAACTGAGGTGGAAAATGAAGCTAGCCGGATACAAACCAAAGACGGATCTGGTGCTTCATAACATAGACGAAGAAGAGAAAGAGGATGCTTTATCTGTTCATAGTGAGAAGCTGGCCATTGCATTTGGGCTTATCAGTACTAGCCCAGGAACTACAATTCGAATTGTAAAGAACTTGCGAGTTTGTAGTGACTGTCATGACGCGACAAAATTAATCTCCAAAATTGTAGAACGAGAGATTATCGTACGAGACCGAAGTCGCTTCCATCATTTCAAAGATGGTAAATGTTCTTGCAATGACTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

603

Amino Acids

67.8

Weight (kDa)

6.41

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 132 - 163 4.8e-06 PPR repeat family
PPR_1 PF12854 132 - 161 5e-07 PPR repeat
PPR PF01535 135 - 163 2.6e-06 PPR repeat
PPR_2 PF13041 165 - 196 5.5e-07 PPR repeat family
PPR PF01535 166 - 196 2.8e-09 PPR repeat
PPR_2 PF13041 194 - 243 2.1e-13 PPR repeat family
PPR PF01535 197 - 226 2.1e-08 PPR repeat
PPR_2 PF13041 295 - 343 1.3e-10 PPR repeat family
PPR PF01535 298 - 328 4.2e-06 PPR repeat
E_motif PF20431 413 - 475 1.7e-17 E motif
DYW_deaminase PF14432 511 - 603 4.5e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24230
malus_domestica MD15G1089600.v1.1
prunus_persica Prupe.1G444200_v2.0.a1
pyrus_communis pycom15g08400
rosa_chinensis RchiOBHm_Chr5g0043351
rosa_laevigata RLG00000034182
rosa_multiflora Rmu_sc0000060.1_g000011 Rmu_sc0000060.1_g000039
rosa_roxburghii Rroxscaffold_1G00037500
rosa_rugosa Rorug05G0205400
rosa_samantha Rh5CG327400
rosa_wichuraiana Rw5G027000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 770, 1239
Acc16I TGCGCA 1 cut(s) 366
AccB1I GGYRCC 2 cut(s) 141, 682
AccI GTMKAC 3 cut(s) 506, 1044, 1369
AccII CGCG 1 cut(s) 1706
AciI CCGC 4 cut(s) 556, 575, 780, 818
AclWI GGATC 1 cut(s) 1557
AcoI YGGCCR 3 cut(s) 3, 921, 1617
AcsI RAATTY 3 cut(s) 287, 319, 1445
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 5 cut(s) 206, 338, 1027, 1642, 1749
AfiI CCNNNNNNNGG 3 cut(s) 115, 855, 930
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 163, 868, 974, 985, 1283, 1777
AjnI CCWGG 2 cut(s) 1405, 1648
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 7 cut(s) 13, 373, 854, 947, 1308, 1525, 1615
AluI AGCT 7 cut(s) 13, 373, 854, 947, 1308, 1525, 1615
Alw21I GWGCWC 3 cut(s) 225, 1110, 1299
Alw26I GTCTC 1 cut(s) 1746
AlwI GGATC 1 cut(s) 1557
AlwNI CAGNNNCTG 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 8 cut(s) 3, 54, 117, 228, 238, 300, 921, 1617
ApeKI GCWGC 3 cut(s) 840, 1358, 1410
ApoI RAATTY 3 cut(s) 287, 319, 1445
AseI ATTAAT 1 cut(s) 1715
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 4 cut(s) 236, 367, 685, 725
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 205, 464, 548
AsuII TTCGAA 1 cut(s) 1663
AsuNHI GCTAGC 1 cut(s) 1525
AvaI CYCGRG 1 cut(s) 246
BaeGI GKGCMC 1 cut(s) 739
BalI TGGCCA 2 cut(s) 923, 1619
BanI GGYRCC 2 cut(s) 141, 682
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 3 cut(s) 225, 1110, 1299
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 827, 1370, 1397
BccI CCATC 5 cut(s) 778, 1066, 1333, 1775, 1776
BceAI ACGGC 2 cut(s) 490, 1122
BciT130I CCWGG 2 cut(s) 1407, 1650
BciVI GTATCC 1 cut(s) 1526
BclI TGATCA 2 cut(s) 513, 1170
BcoDI GTCTC 1 cut(s) 1746
BfaI CTAG 4 cut(s) 855, 1286, 1526, 1644
BfmI CTRYAG 1 cut(s) 1411
BfoI RGCGCY 1 cut(s) 686
BfuI GTATCC 1 cut(s) 1526
BisI GCNGC 5 cut(s) 557, 575, 841, 1359, 1411
BlsI GCNGC 5 cut(s) 558, 576, 842, 1360, 1412
BmcAI AGTACT 1 cut(s) 1642
Bme1390I CCNGG 2 cut(s) 1407, 1650
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 143, 684
BmrFI CCNGG 2 cut(s) 1407, 1650
BmrI ACTGGG 1 cut(s) 924
BmsI GCATC 4 cut(s) 561, 1345, 1477, 1579
BmtI GCTAGC 1 cut(s) 1529
BmuI ACTGGG 1 cut(s) 924
BoxI GACNNNNGTC 1 cut(s) 1758
BpiI GAAGAC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 1663
BpuEI CTTGAG 3 cut(s) 98, 209, 1076
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 1746
BsaJI CCNNGG 2 cut(s) 417, 1648
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 855, 930
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 143, 919, 1811
Bse3DI GCAATG 3 cut(s) 1214, 1620, 1804
BseBI CCWGG 2 cut(s) 1407, 1650
BseDI CCNNGG 2 cut(s) 417, 1648
BseGI GGATG 4 cut(s) 789, 892, 1468, 1594
BseLI CCNNNNNNNGG 3 cut(s) 115, 855, 930
BseMI GCAATG 3 cut(s) 1214, 1620, 1804
BseMII CTCAG 8 cut(s) 140, 246, 630, 1147, 1284, 1364, 1487, 1499
BseNI ACTGG 3 cut(s) 143, 919, 1811
BseRI GAGGAG 2 cut(s) 101, 475
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 3 cut(s) 827, 1370, 1397
BseYI CCCAGC 3 cut(s) 191, 425, 611
Bsh1236I CGCG 1 cut(s) 1706
BshFI GGCC 8 cut(s) 5, 56, 119, 230, 240, 302, 923, 1619
BshNI GGYRCC 2 cut(s) 141, 682
BsiHKAI GWGCWC 3 cut(s) 225, 1110, 1299
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 237, 1530
BsiWI CGTACG 1 cut(s) 1747
BslI CCNNNNNNNGG 3 cut(s) 115, 855, 930
BsmAI GTCTC 1 cut(s) 1746
BsmI GAATGC 3 cut(s) 190, 604, 814
BsnI GGCC 8 cut(s) 5, 56, 119, 230, 240, 302, 923, 1619
Bso31I GGTCTC 1 cut(s) 1746
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 1663
Bsp1286I GDGCHC 4 cut(s) 225, 739, 1110, 1299
Bsp143I GATC 4 cut(s) 513, 1126, 1170, 1549
BspACI CCGC 4 cut(s) 556, 575, 780, 818
BspANI GGCC 8 cut(s) 5, 56, 119, 230, 240, 302, 923, 1619
BspCNI CTCAG 8 cut(s) 139, 247, 631, 1146, 1285, 1365, 1486, 1500
BspFNI CGCG 1 cut(s) 1706
BspHI TCATGA 2 cut(s) 1441, 1699
BspLI GGNNCC 2 cut(s) 143, 684
BspMAI CTGCAG 1 cut(s) 1415
BspOI GCTAGC 1 cut(s) 1529
BspPI GGATC 1 cut(s) 1557
BspT104I TTCGAA 1 cut(s) 1663
BspT107I GGYRCC 2 cut(s) 141, 682
BspTNI GGTCTC 1 cut(s) 1746
BsrDI GCAATG 3 cut(s) 1214, 1620, 1804
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 3 cut(s) 143, 919, 1811
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 417, 1648
BssMI GATC 4 cut(s) 513, 1126, 1170, 1549
BssNI GRCGYC 1 cut(s) 683
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 1407, 1650
Bst4CI ACNGT 3 cut(s) 980, 1365, 1697
Bst6I CTCTTC 1 cut(s) 1572
BstACI GRCGYC 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 1663
BstC8I GCNNGC 7 cut(s) 232, 238, 721, 936, 1379, 1527, 1617
BstDEI CTNAG 9 cut(s) 126, 255, 528, 639, 1133, 1293, 1373, 1473, 1508
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 4 cut(s) 789, 892, 1468, 1594
BstFNI CGCG 1 cut(s) 1706
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 4 cut(s) 236, 367, 685, 725
BstKTI GATC 4 cut(s) 516, 1129, 1173, 1552
BstMAI GTCTC 1 cut(s) 1746
BstMBI GATC 4 cut(s) 513, 1126, 1170, 1549
BstMWI GCNNNNNNNGC 7 cut(s) 35, 104, 242, 608, 617, 944, 1189
BstNI CCWGG 2 cut(s) 1407, 1650
BstNSI RCATGY 6 cut(s) 337, 877, 938, 1026, 1086, 1381
BstPAI GACNNNNGTC 1 cut(s) 1758
BstSCI CCNGG 2 cut(s) 1405, 1648
BstSFI CTRYAG 1 cut(s) 1411
BstSLI GKGCMC 1 cut(s) 739
BstUI CGCG 1 cut(s) 1706
BstV1I GCAGC 3 cut(s) 827, 1370, 1397
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 1549
BstYI RGATCY 1 cut(s) 1549
BsuI GTATCC 1 cut(s) 1526
BsuRI GGCC 8 cut(s) 5, 56, 119, 230, 240, 302, 923, 1619
BtgZI GCGATG 1 cut(s) 617
BtsCI GGATG 4 cut(s) 789, 892, 1468, 1594
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 3 cut(s) 271, 523, 1370
Cac8I GCNNGC 7 cut(s) 232, 238, 721, 936, 1379, 1527, 1617
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 2 cut(s) 1441, 1699
CfoI GCGC 4 cut(s) 236, 367, 685, 725
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 1712
Csp6I GTAC 5 cut(s) 205, 337, 1026, 1641, 1748
CviQI GTAC 5 cut(s) 205, 337, 1026, 1641, 1748
DdeI CTNAG 9 cut(s) 126, 255, 528, 639, 1133, 1293, 1373, 1473, 1508
DinI GGCGCC 1 cut(s) 684
DpnI GATC 4 cut(s) 515, 1128, 1172, 1551
DpnII GATC 4 cut(s) 513, 1126, 1170, 1549
EaeI YGGCCR 3 cut(s) 3, 921, 1617
Eam1104I CTCTTC 1 cut(s) 1572
EarI CTCTTC 1 cut(s) 1572
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 2 cut(s) 119, 230
Eco31I GGTCTC 1 cut(s) 1746
Eco32I GATATC 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 1445
EcoRII CCWGG 2 cut(s) 1405, 1648
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 879
EgeI GGCGCC 1 cut(s) 684
EheI GGCGCC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 417
FauI CCCGC 1 cut(s) 773
FbaI TGATCA 2 cut(s) 513, 1170
FblI GTMKAC 3 cut(s) 506, 1044, 1369
Fnu4HI GCNGC 5 cut(s) 557, 575, 841, 1359, 1411
FokI GGATG 4 cut(s) 796, 899, 1455, 1601
Fsp4HI GCNGC 5 cut(s) 557, 575, 841, 1359, 1411
FspBI CTAG 4 cut(s) 855, 1286, 1526, 1644
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 4 cut(s) 235, 366, 684, 724
GluI GCNGC 5 cut(s) 557, 575, 841, 1359, 1411
GsaI CCCAGC 3 cut(s) 195, 429, 615
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 8 cut(s) 5, 56, 119, 230, 240, 302, 923, 1619
HapII CCGG 2 cut(s) 237, 1530
HgaI GACGC 1 cut(s) 1712
HhaI GCGC 4 cut(s) 236, 367, 685, 725
Hin1I GRCGYC 1 cut(s) 683
Hin6I GCGC 4 cut(s) 234, 365, 683, 723
HinP1I GCGC 4 cut(s) 234, 365, 683, 723
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 945
HinfI GANTC 2 cut(s) 1276, 1289
HpaII CCGG 2 cut(s) 237, 1530
HphI GGTGA 3 cut(s) 205, 464, 548
Hpy166II GTNNAC 6 cut(s) 207, 271, 357, 507, 1045, 1370
Hpy188I TCNGA 3 cut(s) 129, 1233, 1294
Hpy188III TCNNGA 4 cut(s) 1280, 1302, 1442, 1700
Hpy8I GTNNAC 6 cut(s) 207, 271, 357, 507, 1045, 1370
HpyAV CCTTC 2 cut(s) 220, 1338
HpyCH4III ACNGT 3 cut(s) 980, 1365, 1697
HpyCH4IV ACGT 1 cut(s) 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 104, 242, 608, 617, 944, 1189
HpyF3I CTNAG 9 cut(s) 126, 255, 528, 639, 1133, 1293, 1373, 1473, 1508
HpySE526I ACGT 1 cut(s) 1001
Hsp92I GRCGYC 1 cut(s) 683
HspAI GCGC 4 cut(s) 234, 365, 683, 723
KasI GGCGCC 1 cut(s) 682
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 513, 1170
Kzo9I GATC 4 cut(s) 513, 1126, 1170, 1549
LmnI GCTCC 3 cut(s) 193, 260, 1258
Lsp1109I GCAGC 3 cut(s) 827, 1370, 1397
LweI GCATC 4 cut(s) 561, 1345, 1477, 1579
MaeI CTAG 4 cut(s) 855, 1286, 1526, 1644
MaeII ACGT 1 cut(s) 1001
MaeIII GTNAC 5 cut(s) 250, 280, 694, 1393, 1691
MalI GATC 4 cut(s) 515, 1128, 1172, 1551
MboI GATC 4 cut(s) 513, 1126, 1170, 1549
MboII GAAGA 6 cut(s) 85, 499, 1121, 1441, 1586, 1589
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 1549
MhlI GDGCHC 4 cut(s) 225, 739, 1110, 1299
MlsI TGGCCA 2 cut(s) 923, 1619
MluNI TGGCCA 2 cut(s) 923, 1619
Mly113I GGCGCC 1 cut(s) 683
MmeI TCCRAC 3 cut(s) 522, 1397, 1458
Mox20I TGGCCA 2 cut(s) 923, 1619
Mph1103I ATGCAT 1 cut(s) 879
MroNI GCCGGC 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 2 cut(s) 923, 1619
MseI TTAA 4 cut(s) 342, 564, 1500, 1715
MslI CAYNNNNRTG 3 cut(s) 218, 939, 1184
Msp20I TGGCCA 2 cut(s) 923, 1619
MspI CCGG 2 cut(s) 237, 1530
MspR9I CCNGG 2 cut(s) 1407, 1650
MunI CAATTG 1 cut(s) 170
Mva1269I GAATGC 3 cut(s) 190, 604, 814
MvaI CCWGG 2 cut(s) 1407, 1650
MvnI CGCG 1 cut(s) 1706
MwoI GCNNNNNNNGC 7 cut(s) 35, 104, 242, 608, 617, 944, 1189
NaeI GCCGGC 1 cut(s) 238
NarI GGCGCC 1 cut(s) 683
NdeII GATC 4 cut(s) 513, 1126, 1170, 1549
NgoMIV GCCGGC 1 cut(s) 236
NheI GCTAGC 1 cut(s) 1525
NlaIV GGNNCC 2 cut(s) 143, 684
NmuCI GTSAC 3 cut(s) 250, 280, 1691
NsbI TGCGCA 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 6 cut(s) 337, 877, 938, 1026, 1086, 1381
NspV TTCGAA 1 cut(s) 1663
OliI CACNNNNGTG 1 cut(s) 218
PaeI GCATGC 2 cut(s) 938, 1381
PagI TCATGA 2 cut(s) 1441, 1699
PceI AGGCCT 2 cut(s) 119, 230
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PctI GAATGC 3 cut(s) 190, 604, 814
PdiI GCCGGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 1276, 1289
Pfl23II CGTACG 1 cut(s) 1747
PkrI GCNGC 5 cut(s) 558, 576, 842, 1360, 1412
PluTI GGCGCC 1 cut(s) 686
PscI ACATGT 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 1758
PshBI ATTAAT 1 cut(s) 1715
PsiI TTATAA 2 cut(s) 770, 1239
Psp6I CCWGG 2 cut(s) 1405, 1648
PspFI CCCAGC 3 cut(s) 191, 425, 611
PspGI CCWGG 2 cut(s) 1405, 1648
PspLI CGTACG 1 cut(s) 1747
PspN4I GGNNCC 2 cut(s) 143, 684
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 1415
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 1549
RsaI GTAC 5 cut(s) 206, 338, 1027, 1642, 1749
RsaNI GTAC 5 cut(s) 205, 337, 1026, 1641, 1748
RseI CAYNNNNRTG 3 cut(s) 218, 939, 1184
SalI GTCGAC 1 cut(s) 505
SaqAI TTAA 4 cut(s) 342, 564, 1500, 1715
SatI GCNGC 5 cut(s) 557, 575, 841, 1359, 1411
Sau3AI GATC 4 cut(s) 513, 1126, 1170, 1549
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 1642
ScrFI CCNGG 2 cut(s) 1407, 1650
SduI GDGCHC 4 cut(s) 225, 739, 1110, 1299
SfaNI GCATC 4 cut(s) 561, 1345, 1477, 1579
SfcI CTRYAG 1 cut(s) 1411
SfoI GGCGCC 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 1663
SmiMI CAYNNNNRTG 3 cut(s) 218, 939, 1184
SmlI CTYRAG 3 cut(s) 113, 224, 1055
SmoI CTYRAG 3 cut(s) 113, 224, 1055
SphI GCATGC 2 cut(s) 938, 1381
SseBI AGGCCT 2 cut(s) 119, 230
SsiI CCGC 4 cut(s) 556, 575, 780, 818
SspDI GGCGCC 1 cut(s) 682
SspMI CTAG 4 cut(s) 855, 1286, 1526, 1644
StuI AGGCCT 2 cut(s) 119, 230
StyD4I CCNGG 2 cut(s) 1405, 1648
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 980, 1365, 1697
TaiI ACGT 1 cut(s) 1004
TaqI TCGA 5 cut(s) 378, 506, 951, 1337, 1663
TaqII GACCGA 1 cut(s) 1770
TatI WGTACW 4 cut(s) 204, 336, 1025, 1640
TauI GCSGC 2 cut(s) 559, 577
TfiI GAWTC 2 cut(s) 1276, 1289
Tru1I TTAA 4 cut(s) 342, 564, 1500, 1715
Tru9I TTAA 4 cut(s) 342, 564, 1500, 1715
TscAI CASTG 3 cut(s) 278, 523, 1370
TseFI GTSAC 3 cut(s) 250, 280, 1691
TseI GCWGC 3 cut(s) 840, 1358, 1410
Tsp45I GTSAC 3 cut(s) 250, 280, 1691
TspGWI ACGGA 1 cut(s) 1562
TspRI CASTG 3 cut(s) 278, 523, 1370
VspI ATTAAT 1 cut(s) 1715
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 3 cut(s) 287, 319, 1445
XceI RCATGY 6 cut(s) 337, 877, 938, 1026, 1086, 1381
XmiI GTMKAC 3 cut(s) 506, 1044, 1369
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 4 cut(s) 855, 1286, 1526, 1644
ZrmI AGTACT 1 cut(s) 1642
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.