Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

20535253 .. 20545656

Gene Structure 10404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3639 bp

ATGGCTCCTTTCACCAATACTGGAACTCGTTCATGGACATATGATGTCTTTCTGAGTTTCAGAGGAGAGGACACGCGCACAAATTTTACTGACCATTTATACCATGCTTTGCTCAGGAAGGGAATCAACACCTTTATCGATGATCAACTTATAAGAGGAGAAGAAATATCACCGGCGCTGCTCAAAGCAATTGAAGAGTCAAGGATTTCTATCATTGTATTCTCTGAAAAATATGCATCCTCAAGGTGGTGCTTGGATGAACTCGTCAAGATCCTTCGATGTAAAGAATTGAACCATCAAATGGTTTGGCCAGTTTTCTACAAGGTGGATCCGTCACATGTACGCAAACAAGCAGGTACCTTTGGTGCTTCATTTGCTGAATGTATTCGCAAATTCAGGGATAACATGGAAAGGGTGCTCAAATGGAGAGAAGCTCTTACGGAAGCAGCAAATTTGTCCGGATGGCATTTCAAAGAAGGAGAGTACGAATATAATTTCATCAGCAAAATCGTTGAGAGTATCTCGGTCCATGTGCTAAGCTGCACATATCTGCATGTGGCCAAGTACCCTACTGGATTACTGTCATCTGTACGAGATGTGAATGCGATATTGGATGTTGGGGGAAATCGTTGTTGCATGGTTGGGATATGGGGCACACCTGGAATAGGCAAGACAACGGTTGCTAAAGCTGTTTATAATTCCATTGCTCATAAGTTTGAAAGTAGTTGTTTTGTGGAGAATGTTAGAGAAAATTCAATGTCACATGGAGGACTACTACAACTACAAGAGAGAATTCTTCAAGAGACTCTGGGAGGCAAAGAATTGAATGTGATCAGTGTTGATAGAGGAATCAGTGTTATAAAGCAACGTCTGAGCTTGAAAAAGGTTCTCTTAATTCTTGATGATGTGGATCATTTAGATCAGTTAAACAAGTTAGCTGGAGCTGAAAGTTGGTTTGGTCAGGGCAGTAGAGTTATCATAACAACTAGAGATAGGGGATTGCTAACTCGGCATGGAATAGACTTGATATACAAGGTCAGAAAATTGGATTACCAACAAGCTCTTGAGCTGTTCAGTTTGAATGCCTTTGAAATGAATGCACCCCCAGATGGTTATTTGGAACTTGCAGAACGTGCAATTGCCTATGCTCAACATCTTCCGTTAGGTCTGACACTTTTAGGATCTCATCTCCATAACCAAAGCATGGAACATTGGCGAGCTAAATTAGATTATCAGGAAGGAGATCCTTTTGAGTCTATTCAAAGTATTCTCAGAATAAGTTATGATGCATTGGCATATCGTGTGCAACAAGTTTTCCTTGATATTGCTTGTTTCTTCAAGGGTCAAAATAAGGACTATGTGATGCAGATACTACAATGTAAAACCCTCAAGAACGCTGAGGATTGTATTCAAGAACTCGTGCAGAAAGGCATTATAACTATTGAAGACAATAGGATTTTGATGCATGACTTGCTAGAGAAAATGGGAAAGGATATAGTTCATGAAGAATCTCCCACAGAACCTGGTGAACGTAGCAGACTGTGGTTTCATGAAGATGTGTGCCATGTTCTAACAGAAAATACTGGAACAAATAAAATTAAAGGGATCATGATAAAGTTGCCTAAACTAGATGAATTACACTTGAATGCAAAAAGTTTTTCAGGCATGACAAACCTTGGGATTTTTATAAACCGTAACGCACGCCTTTATGGAGAAGTCGGTTTTGTCCCAAGCAAGTTGAGGTTGATTGATTGGGGTAATTGTGAGTTGCAATCTTTGCCATCCAATCTTCAGTTAAATGAACTTGTTGTGTTCAATATGCCTCACAGTCGCATCAGACAACTGGGGAGCAGATTTAAGAACTTGTCAAAGATGACATCTCTAAACTTAAGAGGTTGTGAATTCCTTACAAAAATACCTGACTTATCAGGAAGCCCAAACTTAAAGCACTTGGATCTTTTTGGTTGCACAAGTTTAGTTGAGGTTGATGCTTCTGTTGGATTCCTTCCTAAACTTGTTAGTCTGGATCTTGAGGGGTGCTCCAACCTTGAGATATTTCCAACAAGAATTAGCTTGAAATTGCTGACAAGATTTTGCCTTAAAGATTGCGTAAGCCTTGAGACTTTCCCAGAAATTGAGGACAAGATGGAATTCATCACAGTTTTGAAGTTGGGAGGCAGTGGCATAAGAGAATTGCCTTCATCAATTTCAAATCTAACTGGACTTGCAATATTAGATACAACTGGTTGTTCCGATATGTCAATAAGAAGTATCAGTACTTCCCAAGCTCACTCAAATATCTCACGAGACAACTGTTGCTCATTAGTACTTCCCAAGCTAAAGACTTTGTGGATGAAAGAATGTAATTTATCAAAAAGTGATGTCCTCGTGGCTCTTGATTGCTCTTCGACATTAACAGTTCTTTATCTATCACAAAACAATTTTGTTAGTCTGCCTGCGTCCATTATCAAATTTGTTAACTTGGTGATGCTTAACTTGTCTGGTTGCACCAAGCTTCGAGAAATTCCAGAACTTCCACCAAAAGTAAGAGACGTGTTCACTGGAAATTGCAAAGCATTGGAAATATTTCCAAAACTGTTGAGTGTATTTGAGCATGAGAGCGAGTCACAGGGGCTTGAGAAGCTGTACTTGATCAATTGCAACAAACTATGTGCAAATAATGGTTATGACTTGGCAAGGATCGAATTTCTTTTACTGAATCAGCACTCTTATCCTTTTGAAATTATAGTTCCAGGCAGTGAAGTTCCAATGTGGTTCAACTATCGTTGTGAGGAGGGTCAAGACCTTGTACTTCAATCGGAAATCCTCAACTCTGCTGTTATTTGTGAAGCCTCTGTTAAAGTACCTCGAAATGTAGAATGGGAGAAGTCAGGATTGGTTGTGTGTGTTGTTTTTGAAAAGTGTCAGAGTAGTTTCAATATTCATGCCAAAATTCGTATCAATGGAGTACACAGACATTTGTACATTTACTCTTGCTTAGAACATCAGCTGGAGTCAACCCATGTTTGGTTGAAGTACATCCCCTTGGCGGGTACATACAAGCCACACGTTGATGGAGAGAGTTTGTTGCAGTATGATATGTGCGAAGTTGGAATTTTCTGTTATGCCAGGGACTCTGATGAGTTACTGTTGCTGTCAGTTAAGGGCTGCGGAGTCCACCTAGTATGCCACCAAATTAGGGACGTCCTGGCAACAAATGATACTGATATCGAAGATGATAGTGATACAGAGAAAGAGCACTGGTTTCCCTTTTCATCGGAACAAATGAACCCGCAGCAAAAGTGGCCTCCTGGAGCCTCAGTGGTCATGGAAGTTGATGATACTAGCCAAGCCGATGACAGTGACAGTGCTGACATTGATGTGGATGACAGCTATGCCAATGATCACGAGGAAGATCAATGGTTTTCCTTGTCTTCGGAACCAATGACTCCTCGAACAATGGACCTCCTAAGTTTCCTGAAGCCTCCTGTGGCCTCATCAGTTTTGAAGGAAGTAGATGATACCAACGTTATTAATCCTCAAGAGGATTGGCTTGCCTTGTCTTTGGCACCGATGGGTATTCAACAGGGTCCTGGAGCCTCAGCGGTCATGGGAGTGTTACGATCCCCGGGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

1212

Amino Acids

136.61

Weight (kDa)

5.52

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 176	2.2e-57	TIR domain
TIR_2	PF13676	16 - 111	5.1e-15	TIR domain
NB-ARC	PF00931	200 - 366	8.2e-18	NB-ARC domain
WHD_ROQ1	PF23282	436 - 504	1.9e-12	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	772 - 868	2.7e-09	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_4	PF12799	804 - 846	9.9e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	152, 696, 860, 1436, 1688
AatII	GACGTC	1 cut(s)	3207
Acc36I	ACCTGC	1 cut(s)	344
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	356, 3568
AccB7I	CCANNNNNTGG	2 cut(s)	301, 1204
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	4 cut(s)	3050, 3171, 3293, 3605
AclI	AACGTT	1 cut(s)	3528
AcoI	YGGCCR	2 cut(s)	308, 558
AcuI	CTGAAG	2 cut(s)	1775, 3500
AcyI	GRCGYC	1 cut(s)	3204
AfiI	CCNNNNNNNGG	9 cut(s)	246, 301, 665, 1109, 1204, 3027, 3049, 3050, 3199
AflII	CTTAAG	1 cut(s)	1888
AflIII	ACRYGT	3 cut(s)	337, 2553, 3067
AjiI	CACGTC	1 cut(s)	2554
AjnI	CCWGG	7 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592
AjuI	GAANNNNNNNTTGG	6 cut(s)	593, 625, 939, 971, 2879, 2911
Alw21I	GWGCWC	3 cut(s)	420, 2042, 3261
Alw26I	GTCTC	4 cut(s)	797, 2114, 2301, 2544
AlwNI	CAGNNNCTG	1 cut(s)	1523
Ama87I	CYCGRG	1 cut(s)	3628
Aor13HI	TCCGGA	1 cut(s)	458
AoxI	GGCC	4 cut(s)	308, 558, 3305, 3492
ApeKI	GCWGC	5 cut(s)	178, 446, 540, 3168, 3295
AseI	ATTAAT	1 cut(s)	3534
Asp700I	GAANNNNTTC	3 cut(s)	28, 384, 2586
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	78, 178
AspS9I	GGNCC	3 cut(s)	526, 3463, 3590
AsuC2I	CCSGG	2 cut(s)	3629, 3630
AsuHPI	GGTGA	4 cut(s)	4, 162, 1538, 2497
AvaI	CYCGRG	1 cut(s)	3628
AvaII	GGWCC	3 cut(s)	526, 3463, 3590
BaeGI	GKGCMC	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	3513, 3546
BalI	TGGCCA	2 cut(s)	310, 560
BamHI	GGATCC	1 cut(s)	328
BanI	GGYRCC	2 cut(s)	356, 3568
BarI	GAAGNNNNNNTAC	4 cut(s)	2260, 2263, 2292, 2295
BauI	CACGAG	4 cut(s)	1418, 2304, 2387, 3407
BbsI	GAAGAC	2 cut(s)	1452, 3426
Bbv12I	GWGCWC	3 cut(s)	420, 2042, 3261
BbvCI	CCTCAGC	2 cut(s)	1398, 3601
BbvI	GCAGC	5 cut(s)	165, 458, 527, 3155, 3307
BccI	CCATC	7 cut(s)	303, 456, 1103, 1789, 2140, 3068, 3568
BciT130I	CCWGG	7 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594
BclI	TGATCA	4 cut(s)	142, 831, 2652, 3403
BcnI	CCSGG	2 cut(s)	3629, 3630
BcoDI	GTCTC	4 cut(s)	797, 2114, 2301, 2544
BfaI	CTAG	5 cut(s)	987, 1475, 1628, 3182, 3345
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	1888
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	5 cut(s)	179, 447, 541, 3169, 3296
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	5 cut(s)	180, 448, 542, 3170, 3297
BmcAI	AGTACT	2 cut(s)	2278, 2328
Bme1390I	CCNGG	9 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594, 3629, 3630
Bme18I	GGWCC	3 cut(s)	526, 3463, 3590
BmeT110I	CYCGRG	1 cut(s)	3628
BmgBI	CACGTC	1 cut(s)	2554
BmgT120I	GGNCC	3 cut(s)	526, 3463, 3590
BmiI	GGNNCC	8 cut(s)	6, 330, 358, 3316, 3441, 3570, 3591, 3598
BmrFI	CCNGG	9 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594, 3629, 3630
BmrI	ACTGGG	1 cut(s)	1853
BmsI	GCATC	7 cut(s)	245, 1276, 1353, 1452, 1842, 1978, 2478
BmuI	ACTGGG	1 cut(s)	1853
BpiI	GAAGAC	2 cut(s)	1452, 3426
BplI	GAGNNNNNCTC	6 cut(s)	418, 450, 506, 538, 2024, 2056
BpmI	CTGGAG	4 cut(s)	960, 3032, 3333, 3615
Bpu10I	CCTNAGC	3 cut(s)	113, 1398, 3601
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	8 cut(s)	226, 1085, 1373, 2051, 2069, 2138, 2657, 3525
BpuMI	CCSGG	2 cut(s)	3629, 3630
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	2 cut(s)	209, 909
BsaHI	GRCGYC	1 cut(s)	3204
BsaJI	CCNNGG	5 cut(s)	1675, 3045, 3129, 3627, 3628
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	3306, 3336
Bsc4I	CCNNNNNNNGG	9 cut(s)	246, 301, 665, 1109, 1204, 3027, 3049, 3050, 3199
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	9 cut(s)	25, 311, 577, 1588, 1848, 2224, 2248, 2566, 3266
Bse3DI	GCAATG	1 cut(s)	702
Bse8I	GATNNNNATC	2 cut(s)	209, 909
BseAI	TCCGGA	1 cut(s)	458
BseBI	CCWGG	7 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	5 cut(s)	1675, 3045, 3129, 3627, 3628
BseGI	GGATG	8 cut(s)	236, 262, 467, 619, 1781, 2358, 3039, 3391
BseJI	GATNNNNATC	2 cut(s)	209, 909
BseLI	CCNNNNNNNGG	9 cut(s)	246, 301, 665, 1109, 1204, 3027, 3049, 3050, 3199
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	7 cut(s)	44, 127, 863, 1285, 1389, 3333, 3615
BseNI	ACTGG	9 cut(s)	25, 311, 577, 1588, 1848, 2224, 2248, 2566, 3266
BseRI	GAGGAG	4 cut(s)	78, 171, 2807, 3441
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	5 cut(s)	165, 458, 527, 3155, 3307
BsgI	GTGCAG	2 cut(s)	526, 1442
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	310, 560, 3307, 3494
BshNI	GGYRCC	2 cut(s)	356, 3568
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	3 cut(s)	420, 2042, 3261
BsiHKCI	CYCGRG	1 cut(s)	3628
BsiSI	CCGG	3 cut(s)	173, 459, 3629
BslFI	GGGAC	3 cut(s)	1712, 3146, 3215
BslI	CCNNNNNNNGG	9 cut(s)	246, 301, 665, 1109, 1204, 3027, 3049, 3050, 3199
BsmAI	GTCTC	4 cut(s)	797, 2114, 2301, 2544
BsmBI	CGTCTC	1 cut(s)	2544
BsmFI	GGGAC	3 cut(s)	1712, 3146, 3215
BsmI	GAATGC	4 cut(s)	607, 1087, 1102, 1651
BsnI	GGCC	4 cut(s)	310, 560, 3307, 3494
BsoBI	CYCGRG	1 cut(s)	3628
Bsp1286I	GDGCHC	4 cut(s)	420, 656, 2042, 3261
Bsp13I	TCCGGA	1 cut(s)	458
Bsp1407I	TGTACA	1 cut(s)	2982
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	4 cut(s)	3050, 3171, 3293, 3605
BspANI	GGCC	4 cut(s)	310, 560, 3307, 3494
BspCNI	CTCAG	7 cut(s)	45, 126, 864, 1284, 1390, 3332, 3614
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	3 cut(s)	1501, 1549, 1608
BspLI	GGNNCC	8 cut(s)	6, 330, 358, 3316, 3441, 3570, 3591, 3598
BspMI	ACCTGC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	2410
BspT107I	GGYRCC	2 cut(s)	356, 3568
BspTI	CTTAAG	1 cut(s)	1888
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	2982
BsrI	ACTGG	9 cut(s)	25, 311, 577, 1588, 1848, 2224, 2248, 2566, 3266
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	5 cut(s)	1675, 3045, 3129, 3627, 3628
BssNI	GRCGYC	1 cut(s)	3204
BssSI	CACGAG	4 cut(s)	1418, 2304, 2387, 3407
BssT1I	CCWWGG	2 cut(s)	1675, 3045
Bst2BI	CACGAG	4 cut(s)	1418, 2304, 2387, 3407
Bst2UI	CCWGG	7 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594
Bst6I	CTCTTC	2 cut(s)	189, 2410
BstACI	GRCGYC	1 cut(s)	3204
BstAFI	CTTAAG	1 cut(s)	1888
BstAPI	GCANNNNNTGC	3 cut(s)	1133, 1471, 1777
BstAUI	TGTACA	1 cut(s)	2982
BstC8I	GCNNGC	4 cut(s)	1218, 1702, 2457, 3555
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstF5I	GGATG	8 cut(s)	236, 262, 467, 619, 1781, 2358, 3039, 3391
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	78, 178
BstMAI	GTCTC	4 cut(s)	797, 2114, 2301, 2544
BstMWI	GCNNNNNNNGC	7 cut(s)	374, 1009, 1133, 1471, 1777, 2641, 3304
BstNI	CCWGG	7 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594
BstNSI	RCATGY	2 cut(s)	341, 557
BstSCI	CCNGG	9 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592, 3627, 3628
BstSLI	GKGCMC	1 cut(s)	656
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	5 cut(s)	165, 458, 527, 3155, 3307
BstV2I	GAAGAC	2 cut(s)	1452, 3426
BstX2I	RGATCY	6 cut(s)	270, 328, 1181, 1243, 1954, 2026
BstYI	RGATCY	6 cut(s)	270, 328, 1181, 1243, 1954, 2026
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	4 cut(s)	310, 560, 3307, 3494
BsuTUI	ATCGAT	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	2554
BtsCI	GGATG	8 cut(s)	236, 262, 467, 619, 1781, 2358, 3039, 3391
BtsI	GCAGTG	2 cut(s)	2185, 2764
BtsIMutI	CAGTG	9 cut(s)	841, 859, 2185, 2559, 2764, 3259, 3327, 3367, 3373
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	4 cut(s)	1218, 1702, 2457, 3555
CaiI	CAGNNNCTG	1 cut(s)	1523
CciI	TCATGA	3 cut(s)	1501, 1549, 1608
CfoI	GCGC	2 cut(s)	78, 178
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	526, 3463, 3590
Cfr9I	CCCGGG	1 cut(s)	3628
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	2448
CsiI	ACCWGGT	1 cut(s)	1522
EaeI	YGGCCR	2 cut(s)	308, 558
Eam1104I	CTCTTC	2 cut(s)	189, 2410
EarI	CTCTTC	2 cut(s)	189, 2410
Eco130I	CCWWGG	2 cut(s)	1675, 3045
Eco32I	GATATC	1 cut(s)	3229
Eco47I	GGWCC	3 cut(s)	526, 3463, 3590
Eco57I	CTGAAG	2 cut(s)	1775, 3500
Eco88I	CYCGRG	1 cut(s)	3628
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoO109I	RGGNCCY	1 cut(s)	3590
EcoRI	GAATTC	3 cut(s)	792, 1901, 2150
EcoRII	CCWGG	7 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592
EcoRV	GATATC	1 cut(s)	3229
EcoT14I	CCWWGG	2 cut(s)	1675, 3045
EcoT22I	ATGCAT	3 cut(s)	238, 1291, 1467
ErhI	CCWWGG	2 cut(s)	1675, 3045
Esp3I	CGTCTC	1 cut(s)	2544
FalI	AAGNNNNNCTT	6 cut(s)	875, 907, 1302, 1334, 2633, 2665
FaqI	GGGAC	3 cut(s)	1712, 3146, 3215
FauI	CCCGC	2 cut(s)	3043, 3300
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	4 cut(s)	142, 831, 2652, 3403
Fnu4HI	GCNGC	5 cut(s)	179, 447, 541, 3169, 3296
FokI	GGATG	8 cut(s)	223, 269, 474, 626, 1768, 2365, 3026, 3398
Fsp4HI	GCNGC	5 cut(s)	179, 447, 541, 3169, 3296
FspBI	CTAG	5 cut(s)	987, 1475, 1628, 3182, 3345
GlaI	GCGC	2 cut(s)	77, 177
GluI	GCNGC	5 cut(s)	179, 447, 541, 3169, 3296
GsuI	CTGGAG	4 cut(s)	960, 3032, 3333, 3615
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	310, 560, 3307, 3494
HapII	CCGG	3 cut(s)	173, 459, 3629
HgaI	GACGC	1 cut(s)	2448
HhaI	GCGC	2 cut(s)	78, 178
Hin1I	GRCGYC	1 cut(s)	3204
Hin6I	GCGC	2 cut(s)	76, 176
HinP1I	GCGC	2 cut(s)	76, 176
HincII	GTYRAC	2 cut(s)	2479, 3018
HindII	GTYRAC	2 cut(s)	2479, 3018
HindIII	AAGCTT	1 cut(s)	2513
HpaI	GTTAAC	1 cut(s)	2479
HpaII	CCGG	3 cut(s)	173, 459, 3629
HphI	GGTGA	4 cut(s)	4, 162, 1538, 2497
Hpy166II	GTNNAC	6 cut(s)	1529, 2479, 2559, 2971, 3018, 3178
Hpy8I	GTNNAC	6 cut(s)	1529, 2479, 2559, 2971, 3018, 3178
HpyAV	CCTTC	7 cut(s)	112, 284, 470, 1232, 2015, 2208, 3502
HpyCH4IV	ACGT	7 cut(s)	868, 1132, 1531, 2553, 3069, 3204, 3528
HpyF10VI	GCNNNNNNNGC	7 cut(s)	374, 1009, 1133, 1471, 1777, 2641, 3304
HpySE526I	ACGT	7 cut(s)	868, 1132, 1531, 2553, 3069, 3204, 3528
Hsp92I	GRCGYC	1 cut(s)	3204
HspAI	GCGC	2 cut(s)	76, 176
Kpn2I	TCCGGA	1 cut(s)	458
KpnI	GGTACC	1 cut(s)	360
Ksp22I	TGATCA	4 cut(s)	142, 831, 2652, 3403
KspAI	GTTAAC	1 cut(s)	2479
LguI	GCTCTTC	1 cut(s)	2410
LmnI	GCTCC	6 cut(s)	10, 941, 1848, 2045, 3314, 3596
Lsp1109I	GCAGC	5 cut(s)	165, 458, 527, 3155, 3307
LweI	GCATC	7 cut(s)	245, 1276, 1353, 1452, 1842, 1978, 2478
MabI	ACCWGGT	1 cut(s)	1522
MaeI	CTAG	5 cut(s)	987, 1475, 1628, 3182, 3345
MaeII	ACGT	7 cut(s)	868, 1132, 1531, 2553, 3069, 3204, 3528
MaeIII	GTNAC	7 cut(s)	333, 759, 1694, 2625, 3144, 3362, 3618
MfeI	CAATTG	3 cut(s)	189, 1137, 2656
MflI	RGATCY	6 cut(s)	270, 328, 1181, 1243, 1954, 2026
MhlI	GDGCHC	4 cut(s)	420, 656, 2042, 3261
MlsI	TGGCCA	2 cut(s)	310, 560
MluNI	TGGCCA	2 cut(s)	310, 560
MlyI	GAGTC	8 cut(s)	206, 799, 1262, 2633, 3023, 3128, 3183, 3442
MmeI	TCCRAC	4 cut(s)	1978, 2067, 2084, 3091
Mox20I	TGGCCA	2 cut(s)	310, 560
Mph1103I	ATGCAT	3 cut(s)	238, 1291, 1467
MroI	TCCGGA	1 cut(s)	458
MroXI	GAANNNNTTC	3 cut(s)	28, 384, 2586
MscI	TGGCCA	2 cut(s)	310, 560
MslI	CAYNNNNRTG	5 cut(s)	1554, 1644, 3072, 3380, 3614
Msp20I	TGGCCA	2 cut(s)	310, 560
MspA1I	CMGCKG	2 cut(s)	3010, 3605
MspCI	CTTAAG	1 cut(s)	1888
MspI	CCGG	3 cut(s)	173, 459, 3629
MspR9I	CCNGG	9 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594, 3629, 3630
MunI	CAATTG	3 cut(s)	189, 1137, 2656
Mva1269I	GAATGC	4 cut(s)	607, 1087, 1102, 1651
MvaI	CCWGG	7 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	7 cut(s)	374, 1009, 1133, 1471, 1777, 2641, 3304
NciI	CCSGG	2 cut(s)	3629, 3630
NdeI	CATATG	1 cut(s)	40
NlaIV	GGNNCC	8 cut(s)	6, 330, 358, 3316, 3441, 3570, 3591, 3598
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	4 cut(s)	333, 759, 2625, 3362
NsiI	ATGCAT	3 cut(s)	238, 1291, 1467
NspI	RCATGY	2 cut(s)	341, 557
PagI	TCATGA	3 cut(s)	1501, 1549, 1608
PciI	ACATGT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	2410
PctI	GAATGC	4 cut(s)	607, 1087, 1102, 1651
PdmI	GAANNNNTTC	3 cut(s)	28, 384, 2586
PfeI	GAWTC	5 cut(s)	123, 849, 1508, 2001, 2719
PflMI	CCANNNNNTGG	2 cut(s)	301, 1204
PfoI	TCCNGGA	2 cut(s)	3310, 3592
PkrI	GCNGC	5 cut(s)	180, 448, 542, 3170, 3297
PleI	GAGTC	8 cut(s)	205, 799, 1261, 2632, 3022, 3128, 3182, 3442
PpsI	GAGTC	8 cut(s)	205, 799, 1261, 2632, 3022, 3128, 3182, 3442
PpuMI	RGGWCCY	1 cut(s)	3590
PscI	ACATGT	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	3534
PsiI	TTATAA	5 cut(s)	152, 696, 860, 1436, 1688
Psp1406I	AACGTT	1 cut(s)	3528
Psp5II	RGGWCCY	1 cut(s)	3590
Psp6I	CCWGG	7 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592
PspGI	CCWGG	7 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592
PspN4I	GGNNCC	8 cut(s)	6, 330, 358, 3316, 3441, 3570, 3591, 3598
PspPI	GGNCC	3 cut(s)	526, 3463, 3590
PspPPI	RGGWCCY	1 cut(s)	3590
PstNI	CAGNNNCTG	1 cut(s)	1523
PsuI	RGATCY	6 cut(s)	270, 328, 1181, 1243, 1954, 2026
PvuII	CAGCTG	1 cut(s)	3010
RseI	CAYNNNNRTG	5 cut(s)	1554, 1644, 3072, 3380, 3614
SapI	GCTCTTC	1 cut(s)	2410
SatI	GCNGC	5 cut(s)	179, 447, 541, 3169, 3296
Sau96I	GGNCC	3 cut(s)	526, 3463, 3590
ScaI	AGTACT	2 cut(s)	2278, 2328
SchI	GAGTC	8 cut(s)	206, 799, 1262, 2633, 3023, 3128, 3183, 3442
ScrFI	CCNGG	9 cut(s)	660, 1524, 2754, 3130, 3209, 3312, 3594, 3629, 3630
SduI	GDGCHC	4 cut(s)	420, 656, 2042, 3261
SexAI	ACCWGGT	1 cut(s)	1522
SfaNI	GCATC	7 cut(s)	245, 1276, 1353, 1452, 1842, 1978, 2478
SgrAI	CRCCGGYG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	526, 3463, 3590
SmaI	CCCGGG	1 cut(s)	3630
SmiMI	CAYNNNNRTG	5 cut(s)	1554, 1644, 3072, 3380, 3614
SmlI	CTYRAG	9 cut(s)	241, 1064, 1388, 1888, 2030, 2048, 2117, 2636, 3540
SmoI	CTYRAG	9 cut(s)	241, 1064, 1388, 1888, 2030, 2048, 2117, 2636, 3540
SsiI	CCGC	4 cut(s)	3050, 3171, 3293, 3605
SspI	AATATT	3 cut(s)	2232, 2586, 2941
SspMI	CTAG	5 cut(s)	987, 1475, 1628, 3182, 3345
StyD4I	CCNGG	9 cut(s)	658, 1522, 2752, 3128, 3207, 3310, 3592, 3627, 3628
StyI	CCWWGG	2 cut(s)	1675, 3045
TaiI	ACGT	7 cut(s)	871, 1135, 1534, 2556, 3072, 3207, 3531
TaqI	TCGA	8 cut(s)	138, 277, 2408, 2518, 2703, 2869, 3231, 3454
TaqII	GACCGA	1 cut(s)	514
TatI	WGTACW	7 cut(s)	2276, 2326, 2646, 2809, 2968, 2982, 3036
TfiI	GAWTC	5 cut(s)	123, 849, 1508, 2001, 2719
TscAI	CASTG	9 cut(s)	841, 859, 2185, 2566, 2764, 3266, 3327, 3367, 3373
TseFI	GTSAC	4 cut(s)	333, 759, 2625, 3362
TseI	GCWGC	5 cut(s)	178, 446, 540, 3168, 3295
Tsp45I	GTSAC	4 cut(s)	333, 759, 2625, 3362
TspGWI	ACGGA	3 cut(s)	321, 455, 1149
TspMI	CCCGGG	1 cut(s)	3628
TspRI	CASTG	9 cut(s)	841, 859, 2185, 2566, 2764, 3266, 3327, 3367, 3373
Van91I	CCANNNNNTGG	2 cut(s)	301, 1204
Vha464I	CTTAAG	1 cut(s)	1888
VpaK11BI	GGWCC	3 cut(s)	526, 3463, 3590
VspI	ATTAAT	1 cut(s)	3534
XagI	CCTNNNNNAGG	1 cut(s)	663
XceI	RCATGY	2 cut(s)	341, 557
XmaI	CCCGGG	1 cut(s)	3628
XmnI	GAANNNNTTC	3 cut(s)	28, 384, 2586
XspI	CTAG	5 cut(s)	987, 1475, 1628, 3182, 3345
ZraI	GACGTC	1 cut(s)	3205
ZrmI	AGTACT	2 cut(s)	2278, 2328
Zsp2I	ATGCAT	3 cut(s)	238, 1291, 1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.