Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

9548066 .. 9549782

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1078300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTCCCGCCGCCCCCAAGAGTGGGATCTTCGTCGGCCTCAACAAAGGCCACATCGTCACCAAGCGTGAATTGCCTCCTCGCCCATCTGACCGCAAGGGGAAAACAAGCAAGAGGGTGCATTTCGTGAGGAACTTGATCAGGGAAGTTGCGGGATTTGCTCCCTATGAGAAGAGGATTACGGAGCTTTTGAAGGTCGGGAAGGACAAGCGTGCTCTTAAGGTGGCCAAGCGAAAGTTGGGTACTCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGTCTAACGTTCTCCGCAAGATGAGGTCTGGTGGTGATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

11.43

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	6e-44	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	9, 12, 94, 152, 292
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	23, 24
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	4 cut(s)	37, 49, 225, 255
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	52, 323
BalI	TGGCCA	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 24
BseLI	CCNNNNNNNGG	2 cut(s)	23, 24
BseRI	GAGGAG	2 cut(s)	69, 287
BshFI	GGCC	4 cut(s)	39, 51, 227, 257
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	23, 24
BsnI	GGCC	4 cut(s)	39, 51, 227, 257
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	27, 138
BspACI	CCGC	5 cut(s)	9, 12, 94, 152, 292
BspANI	GGCC	4 cut(s)	39, 51, 227, 257
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	218
BssMI	GATC	2 cut(s)	27, 138
Bst6I	CTCTTC	2 cut(s)	167, 260
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	30, 141
BstMBI	GATC	2 cut(s)	27, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 73, 158
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	39, 51, 227, 257
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	6 cut(s)	5, 39, 51, 187, 227, 257
CviKI_1	RGCY	6 cut(s)	5, 39, 51, 187, 227, 257
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	2 cut(s)	29, 140
DpnII	GATC	2 cut(s)	27, 138
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	167, 260
EarI	CTCTTC	2 cut(s)	167, 260
FaiI	YATR	1 cut(s)	168
FauI	CCCGC	2 cut(s)	16, 145
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	39, 51, 227, 257
HphI	GGTGA	2 cut(s)	52, 323
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	127, 199
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	187, 196
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 73, 158
HpySE526I	ACGT	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	27, 138
LmnI	GCTCC	3 cut(s)	10, 166, 184
LpnPI	CCDG	2 cut(s)	127, 291
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	29, 140
MboI	GATC	2 cut(s)	27, 138
MboII	GAAGA	4 cut(s)	22, 184, 274, 277
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	9 cut(s)	50, 87, 90, 108, 123, 168, 246, 265, 294
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	11, 73, 158
NdeII	GATC	2 cut(s)	27, 138
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	27, 138
Sau96I	GGNCC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	189, 198, 225, 288, 305
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	5 cut(s)	9, 12, 94, 152, 292
TaiI	ACGT	1 cut(s)	288
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.