Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

51167839 .. 51169534

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGAGTGGAGAAGGAGCAGTTCGGTTTCCTTTGTCTGATTCAAGCACTCTCGTGATACAAATGGGGGATATCACCAAGTGGTTCGTCGACGGCTCCACTGACGCCATTGTTAATCCAGCGAATGAGCGAATGCTTGGAGGTGGTGGTGCAGATGGAGCTATACATAGGGCTGCTGGCCCGGATCTTCTACAGGCATGCTATGGTGTTCCGGAAGTCAGGCCAGGAGTCCGCTGCCCCACTGGAGAAGCGAGAATTACCCCAGGGTTTAAGTTGCCTGCGTCTCATGTAATTCACACTGTTGGACCTGTCTACCATGCTGGTAACAGCCCTGAAGTCTATCTGAGCTCTGCATACAGGAATAGCTTGAGCATAGCCAAAGCGCACAACATTCAGTATGTTGCATTTCCTGCCATATCTTGTGGTGTGTATGGATATCCTTATGATGAAGCTGCCGAAGTGTCCCTATCCACAATTAAAGAATCCGTGAATGACATAAAGGAGGTGCACTTTGTTCTTTTCTCGGAAGATATTTACAATGTCTGGTTGGACAAGGCAAAGAAATTGCTTAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

192

Amino Acids

20.54

Weight (kDa)

5.83

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Macro	PF01661	38 - 154	7.4e-41	Macro domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 312
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	223, 262
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	161, 348, 366, 452
AluI	AGCT	4 cut(s)	161, 348, 366, 452
Alw21I	GWGCWC	2 cut(s)	350, 510
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	178, 221
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	173, 234, 452
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	179, 305
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	350, 510
BbvI	GCAGC	3 cut(s)	160, 221, 439
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	225, 264
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	191
BisI	GCNGC	3 cut(s)	174, 235, 453
BlsI	GCNGC	3 cut(s)	175, 236, 454
Bme1390I	CCNGG	3 cut(s)	182, 225, 264
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	179, 305
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	182, 225, 264
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	262, 263
BsaWI	WCCGGW	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	225, 264
BseDI	CCNNGG	2 cut(s)	262, 263
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	160, 221, 439
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	180, 223
BsiHKAI	GWGCWC	2 cut(s)	350, 510
BsiSI	CCGG	2 cut(s)	182, 212
BslFI	GGGAC	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	180, 223
Bsp1286I	GDGCHC	2 cut(s)	350, 510
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	2 cut(s)	180, 223
BspCNI	CTCAG	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	262, 263
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	225, 264
Bst4CI	ACNGT	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	178, 199, 279
BstDEI	CTNAG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 410
BstNI	CCWGG	2 cut(s)	225, 264
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	3 cut(s)	180, 223, 262
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	160, 221, 439
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	180, 223
BtsIMutI	CAGTG	3 cut(s)	99, 240, 297
Cac8I	GCNNGC	3 cut(s)	178, 199, 279
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	179, 305
CseI	GACGC	2 cut(s)	113, 270
CviAII	CATG	3 cut(s)	198, 287, 317
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	350
Eco32I	GATATC	2 cut(s)	73, 437
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	223, 262
EcoRV	GATATC	2 cut(s)	73, 437
EcoT38I	GRGCYC	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	3 cut(s)	201, 290, 320
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	197, 286, 316
FblI	GTMKAC	2 cut(s)	90, 312
Fnu4HI	GCNGC	3 cut(s)	174, 235, 453
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	174, 235, 453
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	174, 235, 453
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	180, 223
HapII	CCGG	2 cut(s)	182, 212
HgaI	GACGC	2 cut(s)	113, 270
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	201, 290, 320
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	41, 228, 482
HpaII	CCGG	2 cut(s)	182, 212
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	91, 313, 508
Hpy188I	TCNGA	3 cut(s)	40, 345, 526
Hpy188III	TCNNGA	2 cut(s)	55, 212
Hpy8I	GTNNAC	3 cut(s)	91, 313, 508
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	152, 353, 404, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 410
HpyF3I	CTNAG	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	201, 290, 320
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	17, 101, 158
Lsp1109I	GCAGC	3 cut(s)	160, 221, 439
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	179, 539
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	350, 510
MluCI	AATT	4 cut(s)	255, 291, 474, 563
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	283, 528
MnlI	CCTC	2 cut(s)	134, 496
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	4 cut(s)	114, 270, 477, 570
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	182, 212
MspR9I	CCNGG	3 cut(s)	182, 225, 264
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	225, 264
MwoI	GCNNNNNNNGC	2 cut(s)	158, 410
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	201, 290, 320
NlaIV	GGNNCC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	201
PasI	CCCWGGG	1 cut(s)	263
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	41, 482
PkrI	GCNGC	3 cut(s)	175, 236, 454
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	223, 262
PspGI	CCWGG	2 cut(s)	223, 262
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	179, 305
PsuI	RGATCY	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	114, 270, 477, 570
SatI	GCNGC	3 cut(s)	174, 235, 453
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	179, 305
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	182, 225, 264
SduI	GDGCHC	2 cut(s)	350, 510
SetI	ASST	7 cut(s)	145, 163, 310, 350, 368, 454, 507
SfcI	CTRYAG	1 cut(s)	191
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
SphI	GCATGC	1 cut(s)	201
Sse9I	AATT	4 cut(s)	255, 291, 474, 563
SsiI	CCGC	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	180, 223, 262
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	255, 291, 474, 563
TfiI	GAWTC	2 cut(s)	41, 482
Tru1I	TTAA	4 cut(s)	114, 270, 477, 570
Tru9I	TTAA	4 cut(s)	114, 270, 477, 570
TscAI	CASTG	3 cut(s)	106, 247, 304
TseI	GCWGC	3 cut(s)	173, 234, 452
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	3 cut(s)	106, 247, 304
VneI	GTGCAC	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	201
XmiI	GTMKAC	2 cut(s)	90, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.