Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

51066051 .. 51066946

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG381700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCCAGCACAGCCGAAAACCGGGCTCTTTGTGGGATTGAACAAAGGGCACATAACCACCAAGAAAGAATTGGCTCCACGCCCTTCTGATCGCAAAGGAAAAACCAGTAAGAGGGTGCACTTTGTTAGGAACTTGATCCGTGAAGTTGCTGGGTTTGCACCGTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGCAAGGACAAGCGTGCACTGAAGGTAGCTAAAAGAAAGTTGGGAACCCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCTAATGTCCTTCGCAAGATGAGGTCTGGTGGTGGAGCTACTGAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

111

Amino Acids

12.53

Weight (kDa)

11.32

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	2.2e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	4 cut(s)	23, 114, 252, 253
AgsI	TTSAA	2 cut(s)	43, 193
AluBI	AGCT	3 cut(s)	187, 227, 317
AluI	AGCT	3 cut(s)	187, 227, 317
Alw21I	GWGCWC	2 cut(s)	123, 217
Alw44I	GTGCAC	2 cut(s)	119, 213
AlwI	GGATC	1 cut(s)	133
ApaLI	GTGCAC	2 cut(s)	119, 213
AsuC2I	CCSGG	1 cut(s)	25
BaeGI	GKGCMC	3 cut(s)	54, 123, 217
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	123, 217
BcnI	CCSGG	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	6, 78, 244
BmrFI	CCNGG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 114, 252, 253
Bse1I	ACTGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	23, 114, 252, 253
BseMII	CTCAG	2 cut(s)	174, 312
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	3 cut(s)	54, 123, 217
BseYI	CCCAGC	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	123, 217
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	4 cut(s)	23, 114, 252, 253
Bsp1286I	GDGCHC	4 cut(s)	30, 54, 123, 217
Bsp143I	GATC	2 cut(s)	91, 138
BspCNI	CTCAG	2 cut(s)	175, 313
BspLI	GGNNCC	3 cut(s)	6, 78, 244
BspPI	GGATC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	91, 138
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	183, 321
BstKTI	GATC	2 cut(s)	94, 141
BstMBI	GATC	2 cut(s)	91, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	23
BstSLI	GKGCMC	3 cut(s)	54, 123, 217
BtsIMutI	CAGTG	2 cut(s)	180, 215
Cac8I	GCNNGC	1 cut(s)	213
CviJI	RGCY	7 cut(s)	5, 16, 28, 77, 187, 227, 317
CviKI_1	RGCY	7 cut(s)	5, 16, 28, 77, 187, 227, 317
DdeI	CTNAG	2 cut(s)	183, 321
DpnI	GATC	2 cut(s)	93, 140
DpnII	GATC	2 cut(s)	91, 138
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	30
FaiI	YATR	2 cut(s)	56, 168
FriOI	GRGCYC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	24
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	2 cut(s)	121, 215
Hpy188I	TCNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	121, 215
HpyAV	CCTTC	4 cut(s)	96, 187, 214, 299
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	3 cut(s)	121, 161, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	183, 321
Kzo9I	GATC	2 cut(s)	91, 138
LmnI	GCTCC	3 cut(s)	10, 82, 314
LpnPI	CCDG	5 cut(s)	21, 37, 121, 138, 291
MalI	GATC	2 cut(s)	93, 140
MboI	GATC	2 cut(s)	91, 138
MboII	GAAGA	2 cut(s)	184, 274
MhlI	GDGCHC	4 cut(s)	30, 54, 123, 217
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	4 cut(s)	108, 246, 265, 294
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	91, 138
NlaIV	GGNNCC	3 cut(s)	6, 78, 244
PfeI	GAWTC	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	6, 78, 244
Sau3AI	GATC	2 cut(s)	91, 138
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	4 cut(s)	30, 54, 123, 217
SetI	ASST	6 cut(s)	189, 198, 225, 229, 305, 319
Sse9I	AATT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	165
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	187, 222
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	187, 222
VneI	GTGCAC	2 cut(s)	119, 213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.