Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

21830589 .. 21832187

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCCAGCGCAGCCGAAAACCGGCCTCTTTGTGGGGCTGAACAAAGGGCATGTGACCACCAAGAAGGAGTTGGCTCCACGCCCTTCTGATCGCAAAGGAAAAACCAGTAAGAGGGTTCACTTTGTTAGGAATTTGATCCGTGAAGTTGCTGGGTTTGCACCGTATGAAAAGAGAATCACTGAGCTTTTGAAGGTTGGCAAGGACAAGCGAGCACTGAAGGTAGCCAAAAGAAAGTTGGGAACCCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCTAATGTCCTTCGCAAGATGAGGTCTGGCGGTGGAGCTACTGAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

11.32

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	2.3e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	5 cut(s)	23, 34, 114, 252, 253
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	2 cut(s)	187, 317
AluI	AGCT	2 cut(s)	187, 317
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	6, 78, 244
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 34, 114, 252, 253
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	5 cut(s)	23, 34, 114, 252, 253
BseMII	CTCAG	2 cut(s)	174, 312
BseNI	ACTGG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	5 cut(s)	23, 34, 114, 252, 253
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	91, 138
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	175, 313
BspLI	GGNNCC	3 cut(s)	6, 78, 244
BspPI	GGATC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	2 cut(s)	91, 138
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	260, 267
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	183, 258, 321
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	94, 141
BstMBI	GATC	2 cut(s)	91, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	180, 215
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	23
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	9 cut(s)	5, 16, 27, 40, 77, 187, 227, 257, 317
CviKI_1	RGCY	9 cut(s)	5, 16, 27, 40, 77, 187, 227, 257, 317
DdeI	CTNAG	3 cut(s)	183, 258, 321
DpnI	GATC	2 cut(s)	93, 140
DpnII	GATC	2 cut(s)	91, 138
Eam1104I	CTCTTC	2 cut(s)	260, 267
EarI	CTCTTC	2 cut(s)	260, 267
Eco57I	CTGAAG	1 cut(s)	239
FaeI	CATG	1 cut(s)	56
FaiI	YATR	2 cut(s)	54, 168
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	5 cut(s)	61, 96, 187, 214, 299
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	183, 258, 321
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	91, 138
LmnI	GCTCC	3 cut(s)	10, 82, 314
LpnPI	CCDG	5 cut(s)	21, 37, 121, 138, 291
Lsp1109I	GCAGC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	93, 140
MboI	GATC	2 cut(s)	91, 138
MboII	GAAGA	3 cut(s)	274, 277, 284
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	133
MnlI	CCTC	4 cut(s)	38, 108, 246, 294
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	2 cut(s)	91, 138
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	3 cut(s)	6, 78, 244
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	6, 78, 244
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	91, 138
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	189, 198, 225, 305, 319
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	165
TasI	AATT	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	187, 222
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	187, 222
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.