Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

19913651 .. 19915066

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACAACTCCACAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGGTCAAGCTCCCTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

103

Amino Acids

11.68

Weight (kDa)

11.78

Isoelectric Point (pI)

65.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 92	7.3e-30	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	265, 282
AflIII	ACRYGT	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	43, 193
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	3 cut(s)	77, 161, 187
AluI	AGCT	3 cut(s)	77, 161, 187
AsiGI	ACCGGT	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	174, 288
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	69, 260
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	265, 282
BspCNI	CTCAG	2 cut(s)	175, 289
BspLI	GGNNCC	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	183, 201, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	180, 262
Cfr10I	RCCGGY	1 cut(s)	23
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	77, 161, 187, 230
CviKI_1	RGCY	4 cut(s)	77, 161, 187, 230
DdeI	CTNAG	3 cut(s)	183, 201, 297
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	56
FaiI	YATR	2 cut(s)	54, 168
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	1 cut(s)	52
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	183, 201, 297
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	82, 166
LpnPI	CCDG	5 cut(s)	37, 76, 138, 264, 268
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	31, 184
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	6 cut(s)	90, 96, 108, 198, 238, 267
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	23
PscI	ACATGT	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	217
SetI	ASST	6 cut(s)	70, 79, 163, 189, 198, 278
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	265, 282
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	187, 262
TspRI	CASTG	2 cut(s)	187, 262
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.