Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

533058 .. 534729

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGGCGACAGGCTTATTCGTGGGGCTAAACAAAGGACACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAGAGAGCTAAACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGTGGTGCTGGTGCATCCGAGAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

11.57

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	4 - 97	1.6e-41	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	140, 280
AclWI	GGATC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	4 cut(s)	149, 175, 203, 245
AluI	AGCT	4 cut(s)	149, 175, 203, 245
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BmsI	GCATC	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	57, 275
Bsh1236I	CGCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	140, 280
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstUI	CGCG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	168, 277
Cac8I	GCNNGC	1 cut(s)	59
CviJI	RGCY	6 cut(s)	15, 28, 149, 175, 203, 245
CviKI_1	RGCY	6 cut(s)	15, 28, 149, 175, 203, 245
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	1 cut(s)	156
FauI	CCCGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	103, 279, 283, 288
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	75, 78, 156, 253, 282
MseI	TTAA	1 cut(s)	207
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	8 cut(s)	45, 67, 151, 177, 186, 205, 247, 293
SfaNI	GCATC	1 cut(s)	317
SsiI	CCGC	2 cut(s)	140, 280
SstI	GAGCTC	1 cut(s)	205
TaiI	ACGT	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	175, 277
TspRI	CASTG	2 cut(s)	175, 277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.