Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

12214802 .. 12216618

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCCGGCACAGCCCAAGACTGGGCTCTTCGTCGGATTGAACAAGGGACACGTCACCACCAAGCGTGAATTGGCTCCTCGCCCTTCTGACAGAAAAGGGAAAACGAGCAAGAGGGTCCACTTTGTGAGGAACCTGATCAGGGAAGTTGCTGGGTTTGCTCCATATGAGAAGAGGATCACTGAGCTCTTGAAGGTCGGTAAGGACAAGCGTGCTCTTAAGGTCGCCAAGAGGAAGTTGGGTACCCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTTCGCAAGATGAGGTCTGGTGGTGGCGCCACCGACAAAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

111

Amino Acids

12.53

Weight (kDa)

11.43

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	1.6e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	242, 314
AclWI	GGATC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	315
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	43, 193
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	2 cut(s)	189, 217
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	118, 255
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	2 cut(s)	242, 314
BanII	GRGCYC	2 cut(s)	30, 189
Bbv12I	GWGCWC	2 cut(s)	189, 217
BclI	TGATCA	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	118, 255
BmiI	GGNNCC	6 cut(s)	6, 78, 119, 134, 244, 316
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
Bse1I	ACTGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	69, 287
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	2 cut(s)	242, 314
BsiHKAI	GWGCWC	2 cut(s)	189, 217
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	30, 189, 217
Bsp143I	GATC	2 cut(s)	138, 177
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	6 cut(s)	6, 78, 119, 134, 244, 316
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	2 cut(s)	242, 314
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	138, 177
BssNI	GRCGYC	1 cut(s)	315
Bst6I	CTCTTC	3 cut(s)	35, 167, 260
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	2 cut(s)	141, 180
BstMBI	GATC	2 cut(s)	138, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	118, 255
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	6 cut(s)	5, 16, 28, 77, 187, 257
CviKI_1	RGCY	6 cut(s)	5, 16, 28, 77, 187, 257
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	2 cut(s)	140, 179
DpnII	GATC	2 cut(s)	138, 177
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	35, 167, 260
EarI	CTCTTC	3 cut(s)	35, 167, 260
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	30, 189
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	30, 189
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
FaiI	YATR	2 cut(s)	166, 168
FaqI	GGGAC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	138
FriOI	GRGCYC	2 cut(s)	30, 189
GlaI	GCGC	1 cut(s)	316
GsaI	CCCAGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	38, 91
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	96, 187
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	315
HspAI	GCGC	1 cut(s)	315
KasI	GGCGCC	1 cut(s)	314
KpnI	GGTACC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 177
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	3 cut(s)	10, 82, 166
LpnPI	CCDG	6 cut(s)	9, 21, 127, 138, 149, 291
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	140, 179
MboI	GATC	2 cut(s)	138, 177
MboII	GAAGA	5 cut(s)	22, 184, 274, 277, 281
MhlI	GDGCHC	3 cut(s)	30, 189, 217
MluCI	AATT	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	90, 108, 123, 168, 225, 246, 265, 294
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	158
NarI	GGCGCC	1 cut(s)	315
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	138, 177
NlaIV	GGNNCC	6 cut(s)	6, 78, 119, 134, 244, 316
NmuCI	GTSAC	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	6 cut(s)	6, 78, 119, 134, 244, 316
PspPI	GGNCC	2 cut(s)	118, 255
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	138, 177
Sau96I	GGNCC	2 cut(s)	118, 255
SduI	GDGCHC	3 cut(s)	30, 189, 217
SetI	ASST	6 cut(s)	57, 138, 189, 198, 225, 305
SfoI	GGCGCC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	71
SspDI	GGCGCC	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	189
TaiI	ACGT	1 cut(s)	57
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.