Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

15774030 .. 15775374

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGACAACTCCAGCAGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGTCACCAGACGTGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACCATATTCATAAGAAAACTGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGAATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

113

Amino Acids

12.74

Weight (kDa)

11.74

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	4.5e-41	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	43
AhdI	GACNNNNNGTC	1 cut(s)	56
AjiI	CACGTC	2 cut(s)	55, 68
AluBI	AGCT	5 cut(s)	73, 77, 152, 187, 257
AluI	AGCT	5 cut(s)	73, 77, 152, 187, 257
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	317, 320, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AsiGI	ACCGGT	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	52
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	304, 307, 310
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	74, 282
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	318, 321, 324
BlsI	GCNGC	3 cut(s)	319, 322, 325
Bme18I	GGWCC	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmgBI	CACGTC	2 cut(s)	55, 68
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	162
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	174, 318
BseRI	GAGGAG	2 cut(s)	69, 287
BseXI	GCAGC	3 cut(s)	304, 307, 310
BshTI	ACCGGT	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	175, 319
BspLI	GGNNCC	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	167, 260
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	75, 213
BstDEI	CTNAG	4 cut(s)	183, 228, 258, 327
BstMAI	GTCTC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 323
BstV1I	GCAGC	3 cut(s)	304, 307, 310
BstV2I	GAAGAC	1 cut(s)	26
BtrI	CACGTC	2 cut(s)	55, 68
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 180
Cac8I	GCNNGC	2 cut(s)	75, 213
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	23
CviJI	RGCY	6 cut(s)	73, 77, 152, 161, 187, 257
CviKI_1	RGCY	6 cut(s)	73, 77, 152, 161, 187, 257
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	4 cut(s)	183, 228, 258, 327
DriI	GACNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	167, 260
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	2 cut(s)	167, 260
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	117
FaiI	YATR	3 cut(s)	122, 128, 168
FaqI	GGGAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	318, 321, 324
Fsp4HI	GCNGC	3 cut(s)	318, 321, 324
FspBI	CTAG	2 cut(s)	74, 282
GluI	GCNGC	3 cut(s)	318, 321, 324
HapII	CCGG	1 cut(s)	24
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	54, 67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 323
HpyF3I	CTNAG	4 cut(s)	183, 228, 258, 327
HpySE526I	ACGT	2 cut(s)	54, 67
LmnI	GCTCC	2 cut(s)	82, 166
LpnPI	CCDG	4 cut(s)	24, 37, 76, 138
Lsp1109I	GCAGC	3 cut(s)	304, 307, 310
MaeI	CTAG	2 cut(s)	74, 282
MaeII	ACGT	2 cut(s)	54, 67
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	31, 184, 277
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	90, 108, 225, 255, 265, 294
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	158, 323
NheI	GCTAGC	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	319, 322, 325
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	318, 321, 324
Sau96I	GGNCC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	191, 218
SmoI	CTYRAG	2 cut(s)	191, 218
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	74, 282
TaiI	ACGT	2 cut(s)	57, 70
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	21, 187
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	3 cut(s)	317, 320, 323
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	21, 187
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	117
XspI	CTAG	2 cut(s)	74, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.