Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

8294871 .. 8295403

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGCTGCCGCAGCCCAAGACTGGGCTCTTCGTCGGACTGAACAAGGGTCACGTCACTACCAAGAAGGAATTGGCTCCTCGCCCTTTTGACCGCAAAGGCAAAACGAGCAAGAGGGTTCACTTTGTGAGGAACCTGATCAGGGAAGTTGCTAGGTTTGCTCCATATGAGAAAAGGATCACTGAGCTTTTGAAGGTCGGAAAGGACAAGCGTGCTCTTAAGGTCGCCAAGAGGAAGTTGGGTACCCACAAGAGAGCCAAGAAGAAGAGAGAGGAGATGTCTAACGTTCTCCGCAAGATGAGGTCTGGTGGTACCACTGAGAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

11.44

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	9.5e-41	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	242, 311
AccB1I	GGYRCC	2 cut(s)	242, 311
AciI	CCGC	3 cut(s)	11, 94, 292
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	2 cut(s)	244, 313
AfiI	CCNNNNNNNGG	3 cut(s)	23, 24, 142
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	7, 13
Asp718I	GGTACC	2 cut(s)	242, 311
AspLEI	GCGC	1 cut(s)	7
BanI	GGYRCC	2 cut(s)	242, 311
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	138
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	8, 11, 14
BlsI	GCNGC	3 cut(s)	9, 12, 15
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	78, 134, 244, 313
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 24, 142
Bse1I	ACTGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	23, 24, 142
BseMII	CTCAG	2 cut(s)	174, 309
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	69, 287
BseXI	GCAGC	1 cut(s)	25
BshNI	GGYRCC	2 cut(s)	242, 311
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	23, 24, 142
Bsp1286I	GDGCHC	2 cut(s)	30, 217
Bsp143I	GATC	2 cut(s)	138, 177
BspACI	CCGC	3 cut(s)	11, 94, 292
BspCNI	CTCAG	2 cut(s)	175, 310
BspLI	GGNNCC	4 cut(s)	78, 134, 244, 313
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	2 cut(s)	242, 311
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	138, 177
Bst6I	CTCTTC	2 cut(s)	35, 260
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	183, 318
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	141, 180
BstMBI	GATC	2 cut(s)	138, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
BstV1I	GCAGC	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	180, 315
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	243, 312
CviJI	RGCY	5 cut(s)	16, 28, 77, 187, 257
CviKI_1	RGCY	5 cut(s)	16, 28, 77, 187, 257
CviQI	GTAC	2 cut(s)	243, 312
DdeI	CTNAG	2 cut(s)	183, 318
DpnI	GATC	2 cut(s)	140, 179
DpnII	GATC	2 cut(s)	138, 177
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	35, 260
EarI	CTCTTC	2 cut(s)	35, 260
Eco24I	GRGCYC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	30
FaiI	YATR	2 cut(s)	166, 168
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	8, 11, 14
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	8, 11, 14
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	8, 11, 14
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	38, 200
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	61, 187
HpyCH4IV	ACGT	2 cut(s)	54, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
HpyF3I	CTNAG	2 cut(s)	183, 318
HpySE526I	ACGT	2 cut(s)	54, 285
HspAI	GCGC	1 cut(s)	5
KpnI	GGTACC	2 cut(s)	246, 315
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 177
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	82, 166
LpnPI	CCDG	4 cut(s)	9, 127, 149, 291
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	54, 285
MaeIII	GTNAC	2 cut(s)	50, 55
MalI	GATC	2 cut(s)	140, 179
MboI	GATC	2 cut(s)	138, 177
MboII	GAAGA	3 cut(s)	22, 274, 277
MhlI	GDGCHC	2 cut(s)	30, 217
MluCI	AATT	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	16, 178
MnlI	CCTC	6 cut(s)	90, 108, 123, 225, 265, 294
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	138, 177
NlaIV	GGNNCC	4 cut(s)	78, 134, 244, 313
NmuCI	GTSAC	2 cut(s)	50, 55
PciSI	GCTCTTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	9, 12, 15
Psp1406I	AACGTT	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	78, 134, 244, 313
RsaI	GTAC	2 cut(s)	244, 313
RsaNI	GTAC	2 cut(s)	243, 312
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	8, 11, 14
Sau3AI	GATC	2 cut(s)	138, 177
SduI	GDGCHC	2 cut(s)	30, 217
SetI	ASST	8 cut(s)	57, 138, 158, 189, 198, 225, 288, 305
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	11, 94, 292
SspMI	CTAG	1 cut(s)	153
TaiI	ACGT	2 cut(s)	57, 288
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	187, 322
TseFI	GTSAC	2 cut(s)	50, 55
TseI	GCWGC	2 cut(s)	7, 13
Tsp45I	GTSAC	2 cut(s)	50, 55
TspRI	CASTG	2 cut(s)	187, 322
Vha464I	CTTAAG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 235
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.