Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

51164666 .. 51166513

Gene Structure 1848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGAGTGGAGAAGGAGCAGTTCGGTTTCCTTTGTCTGATTCAAGCACTCTCGTGATACAAATGGGAGGTATCACCAAGTGGTTAATTCAGCGAATGAGCGAATGCTTGGAGGTGGTGGTGGAGATGGCGCTATACATAGGGCTGCTGGCCCGGATCTTCTACAGGCATGGCTATGGTGTCCCCGAAGCCAGGCCAGGAGTCCGCTGCCCCACTGGAGAAGCGAGAATTACCCCAGGGTTTAAGTTGCCTGCGTCTCATGTAATTCACACTGTTGGACCTGTCTACCGTCCTGGTAGCGTCTACCCTCCTGCTAGCAACCCTGAAGTTTATCTGAGCTCTGCATACAGGAATAGCTTGAGCATAGCCAAAGCACACAACATTCAGTATGTTGCATTTCCTCCCATATCTTGTGGTTCGTATGGATATCCTTATGATGAAGCTGCCCAAGTGTCTCTATCCACAATTAAGGATTCCGTGAATGACATAAAGGAGGTGCACTTTGTCCATTTCTCGGAAGATATTTACAATGTCTGGTTGGAAAAGGCAAAGAAATTGCTTAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

189

Amino Acids

20.84

Weight (kDa)

8.38

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Macro	PF01661	69 - 151	8.2e-25	Macro domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	285, 303
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	192, 514
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	4 cut(s)	191, 196, 235, 292
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	339, 357, 443
AluI	AGCT	3 cut(s)	339, 357, 443
Alw21I	GWGCWC	2 cut(s)	341, 501
Alw26I	GTCTC	2 cut(s)	261, 459
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	150, 194
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	3 cut(s)	145, 207, 443
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	151, 278
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	341, 501
BbvI	GCAGC	3 cut(s)	132, 194, 430
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	4 cut(s)	193, 198, 237, 294
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	261, 459
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	3 cut(s)	146, 208, 444
BlsI	GCNGC	3 cut(s)	147, 209, 445
Bme1390I	CCNGG	5 cut(s)	154, 193, 198, 237, 294
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	151, 278
BmrFI	CCNGG	5 cut(s)	154, 193, 198, 237, 294
BmtI	GCTAGC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	235, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 514
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	4 cut(s)	193, 198, 237, 294
BseDI	CCNNGG	2 cut(s)	235, 236
BseLI	CCNNNNNNNGG	2 cut(s)	192, 514
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	3 cut(s)	132, 194, 430
BshFI	GGCC	2 cut(s)	152, 196
BsiHKAI	GWGCWC	2 cut(s)	341, 501
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	192, 514
BsmAI	GTCTC	2 cut(s)	261, 459
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	152, 196
Bsp1286I	GDGCHC	2 cut(s)	341, 501
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	152, 196
BspCNI	CTCAG	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	235, 236
BssMI	GATC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	4 cut(s)	193, 198, 237, 294
Bst4CI	ACNGT	2 cut(s)	274, 290
BstC8I	GCNNGC	3 cut(s)	150, 252, 316
BstDEI	CTNAG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	2 cut(s)	261, 459
BstMBI	GATC	1 cut(s)	156
BstNI	CCWGG	4 cut(s)	193, 198, 237, 294
BstSCI	CCNGG	5 cut(s)	152, 191, 196, 235, 292
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	132, 194, 430
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	152, 196
BtsIMutI	CAGTG	2 cut(s)	213, 270
Cac8I	GCNNGC	3 cut(s)	150, 252, 316
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	151, 278
CseI	GACGC	2 cut(s)	243, 289
CviAII	CATG	2 cut(s)	170, 260
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DraIII	CACNNNGTG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	339
EcoRII	CCWGG	4 cut(s)	191, 196, 235, 292
EcoRV	GATATC	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	2 cut(s)	173, 263
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	169, 259
FblI	GTMKAC	2 cut(s)	285, 303
Fnu4HI	GCNGC	3 cut(s)	146, 208, 444
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	146, 208, 444
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	146, 208, 444
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	152, 196
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	2 cut(s)	243, 289
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	173, 263
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	41, 201, 473
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	286, 304, 499
Hpy188I	TCNGA	3 cut(s)	40, 336, 517
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	286, 304, 499
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	274, 290
HpyCH4V	TGCA	3 cut(s)	344, 395, 499
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	173, 263
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	3 cut(s)	132, 194, 430
MaeI	CTAG	1 cut(s)	315
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	151, 530
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	341, 501
MluCI	AATT	5 cut(s)	87, 228, 264, 465, 554
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	256, 519
MnlI	CCTC	5 cut(s)	62, 106, 318, 411, 487
MseI	TTAA	4 cut(s)	86, 243, 468, 561
MslI	CAYNNNNRTG	2 cut(s)	53, 174
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	5 cut(s)	154, 193, 198, 237, 294
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	4 cut(s)	193, 198, 237, 294
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	173, 263
OliI	CACNNNNGTG	1 cut(s)	53
PasI	CCCWGGG	1 cut(s)	236
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	41, 473
PkrI	GCNGC	3 cut(s)	147, 209, 445
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	341
Psp6I	CCWGG	4 cut(s)	191, 196, 235, 292
PspGI	CCWGG	4 cut(s)	191, 196, 235, 292
PspPI	GGNCC	2 cut(s)	151, 278
PsuI	RGATCY	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	53, 174
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	86, 243, 468, 561
SatI	GCNGC	3 cut(s)	146, 208, 444
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	151, 278
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	5 cut(s)	154, 193, 198, 237, 294
SduI	GDGCHC	2 cut(s)	341, 501
SetI	ASST	7 cut(s)	73, 117, 283, 341, 359, 445, 498
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	53, 174
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	87, 228, 264, 465, 554
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	341
StyD4I	CCNGG	5 cut(s)	152, 191, 196, 235, 292
TaaI	ACNGT	2 cut(s)	274, 290
TasI	AATT	5 cut(s)	87, 228, 264, 465, 554
TfiI	GAWTC	2 cut(s)	41, 473
Tru1I	TTAA	4 cut(s)	86, 243, 468, 561
Tru9I	TTAA	4 cut(s)	86, 243, 468, 561
TscAI	CASTG	2 cut(s)	220, 277
TseI	GCWGC	3 cut(s)	145, 207, 443
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	220, 277
VneI	GTGCAC	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	285, 303
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.