Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

36926756 .. 36928337

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCAAAACCTAAACAAAATTGCTCTAACACGACCCGCCCTCTCTGAAGATCTAGCAGCAGAATCAAAGGAAATGGCCCCGGCACAGCCCAAGACTGGGCTCTTCGTCGGATTGAACAAGGGACACGTCACCACCAAGCGTGAATTGGCTCCTCGCCCTTCTGACAGAAAAGGGAAAACGAGCAAGAGGGTCCACTTTGTGAGGAACCTGATCAGGGAAGTTGCTGGGTTTGCTCCATATGAGAAGAGGATCACTGAGCTCTTGAAGGTCGGCAAGGACAAGCGTGCTCTTAAGGTCGCCAAGAGGAAGTTGGGTACCCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTTCGCAAGATGAGGTCTGGTGGTGGCGCCACCGAGAAAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

10.99

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	32 - 125	3.2e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	314, 386
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	5 cut(s)	95, 96, 214, 324, 325
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	115, 265
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	2 cut(s)	261, 289
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	2 cut(s)	75, 327
ApeKI	GCWGC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	76, 190, 327
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	314, 386
BanII	GRGCYC	2 cut(s)	102, 261
Bbv12I	GWGCWC	2 cut(s)	261, 289
BbvI	GCAGC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	76, 190, 327
BmiI	GGNNCC	6 cut(s)	78, 150, 191, 206, 316, 388
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 96, 214, 324, 325
Bse1I	ACTGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	5 cut(s)	95, 96, 214, 324, 325
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	141, 359
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	77, 329
BshNI	GGYRCC	2 cut(s)	314, 386
BsiHKAI	GWGCWC	2 cut(s)	261, 289
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	5 cut(s)	95, 96, 214, 324, 325
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	77, 329
Bsp1286I	GDGCHC	3 cut(s)	102, 261, 289
Bsp143I	GATC	3 cut(s)	49, 210, 249
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	77, 329
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	6 cut(s)	78, 150, 191, 206, 316, 388
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	2 cut(s)	314, 386
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	49, 210, 249
BssNI	GRCGYC	1 cut(s)	387
Bst6I	CTCTTC	3 cut(s)	107, 239, 332
BstACI	GRCGYC	1 cut(s)	387
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	3 cut(s)	52, 213, 252
BstMBI	GATC	3 cut(s)	49, 210, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	77, 329
BtrI	CACGTC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	3 cut(s)	76, 190, 327
Csp6I	GTAC	1 cut(s)	315
CviJI	RGCY	6 cut(s)	77, 88, 100, 149, 259, 329
CviKI_1	RGCY	6 cut(s)	77, 88, 100, 149, 259, 329
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	3 cut(s)	51, 212, 251
DpnII	GATC	3 cut(s)	49, 210, 249
DraIII	CACNNNGTG	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	107, 239, 332
EarI	CTCTTC	3 cut(s)	107, 239, 332
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	102, 261
Eco47I	GGWCC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	102, 261
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
FaiI	YATR	2 cut(s)	238, 240
FaqI	GGGAC	1 cut(s)	135
FauI	CCCGC	1 cut(s)	43
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	57
FriOI	GRGCYC	2 cut(s)	102, 261
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	77, 329
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	46, 110, 163
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	168, 259
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	387
HspAI	GCGC	1 cut(s)	387
KasI	GGCGCC	1 cut(s)	386
KpnI	GGTACC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	49, 210, 249
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	154, 238
LpnPI	CCDG	6 cut(s)	81, 93, 199, 210, 221, 363
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	51, 212, 251
MboI	GATC	3 cut(s)	49, 210, 249
MboII	GAAGA	6 cut(s)	59, 94, 256, 346, 349, 353
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	3 cut(s)	102, 261, 289
MluCI	AATT	2 cut(s)	18, 143
Mly113I	GGCGCC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	50, 162, 180, 195, 240, 297, 318, 337, 366
MseI	TTAA	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	230
NarI	GGCGCC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	3 cut(s)	49, 210, 249
NlaIV	GGNNCC	6 cut(s)	78, 150, 191, 206, 316, 388
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	6 cut(s)	78, 150, 191, 206, 316, 388
PspPI	GGNCC	3 cut(s)	76, 190, 327
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	49, 210, 249
Sau96I	GGNCC	3 cut(s)	76, 190, 327
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	3 cut(s)	102, 261, 289
SetI	ASST	7 cut(s)	12, 129, 210, 261, 270, 297, 377
SfoI	GGCGCC	1 cut(s)	388
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	18, 143
SsiI	CCGC	1 cut(s)	36
SspDI	GGCGCC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	129
TasI	AATT	2 cut(s)	18, 143
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 307
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.