Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

8576070 .. 8577784

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGCCGCCGCAGCCCAAGACTGGGCTCTTCGTCGGACTGAACAAGGGTCACGTCACCACCAAGAAGGAATTGGCTCCTCGCCCTTCTGACCGCAAAGGCAAAACGAGCAAGAGGGTTCACTTTGTGAGGAACCTGATCAGGGAAGTTGCTGGGTTTGCTCCATATGAGAAGAGGATCACTGAGCTTTTGAAGGTCGGAAAGGACAAGCGTGCTCTTAAGGTCGCCAAGAGGAAGTTGGGTACCCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGTCTAACGTTCTCCGCAAGATGAGGTCTGGTGGTACCACCGAGAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

111

Amino Acids

12.51

Weight (kDa)

11.32

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	8 - 101	2.2e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	242, 311
AccB1I	GGYRCC	3 cut(s)	4, 242, 311
AciI	CCGC	4 cut(s)	8, 11, 94, 292
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	2 cut(s)	244, 313
AfiI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	13
Asp718I	GGTACC	2 cut(s)	242, 311
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	49
BanI	GGYRCC	3 cut(s)	4, 242, 311
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	8, 11, 14
BlsI	GCNGC	3 cut(s)	9, 12, 15
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	5 cut(s)	6, 78, 134, 244, 313
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
Bse1I	ACTGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	69, 287
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	3 cut(s)	4, 242, 311
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	5 cut(s)	23, 24, 142, 252, 253
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	30, 217
Bsp143I	GATC	2 cut(s)	138, 177
BspACI	CCGC	4 cut(s)	8, 11, 94, 292
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	5 cut(s)	6, 78, 134, 244, 313
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	3 cut(s)	4, 242, 311
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	138, 177
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	3 cut(s)	35, 167, 260
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	141, 180
BstMBI	GATC	2 cut(s)	138, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	243, 312
CviJI	RGCY	5 cut(s)	16, 28, 77, 187, 257
CviKI_1	RGCY	5 cut(s)	16, 28, 77, 187, 257
CviQI	GTAC	2 cut(s)	243, 312
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	140, 179
DpnII	GATC	2 cut(s)	138, 177
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	35, 167, 260
EarI	CTCTTC	3 cut(s)	35, 167, 260
Eco24I	GRGCYC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaiI	YATR	2 cut(s)	166, 168
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	8, 11, 14
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	8, 11, 14
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	8, 11, 14
GsaI	CCCAGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	38, 91, 200
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	61, 96, 187
HpyCH4IV	ACGT	2 cut(s)	54, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	54, 285
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	2 cut(s)	246, 315
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 177
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	82, 166
LpnPI	CCDG	5 cut(s)	9, 127, 138, 149, 291
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	2 cut(s)	54, 285
MaeIII	GTNAC	2 cut(s)	50, 55
MalI	GATC	2 cut(s)	140, 179
MboI	GATC	2 cut(s)	138, 177
MboII	GAAGA	4 cut(s)	22, 184, 274, 277
MhlI	GDGCHC	2 cut(s)	30, 217
MluCI	AATT	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	16, 178
MnlI	CCTC	8 cut(s)	90, 108, 123, 168, 225, 246, 265, 294
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	13, 108, 158
NarI	GGCGCC	1 cut(s)	5
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	138, 177
NlaIV	GGNNCC	5 cut(s)	6, 78, 134, 244, 313
NmuCI	GTSAC	2 cut(s)	50, 55
PciSI	GCTCTTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	9, 12, 15
PluTI	GGCGCC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	5 cut(s)	6, 78, 134, 244, 313
PspPI	GGNCC	1 cut(s)	255
RsaI	GTAC	2 cut(s)	244, 313
RsaNI	GTAC	2 cut(s)	243, 312
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	8, 11, 14
Sau3AI	GATC	2 cut(s)	138, 177
Sau96I	GGNCC	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	30, 217
SetI	ASST	7 cut(s)	57, 138, 189, 198, 225, 288, 305
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	8, 11, 94, 292
SspDI	GGCGCC	1 cut(s)	4
TaiI	ACGT	2 cut(s)	57, 288
TasI	AATT	1 cut(s)	71
TauI	GCSGC	2 cut(s)	10, 13
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	50, 55
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	50, 55
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.