Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Reverse (-)

28733469 .. 28734877

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCCAAAACAGCCGAACACTGGGATTTTTGTGGGATTGAATAAAGGCCACATAGTGACCAGGAAGGAATTAGCTCCACGCCCTTCTGATCGCAAAGGGAAAACTAGTAAAAGGGTACACTTTGTTAGGAATTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAAAAGAGAATCACTGAGCTTCTTAAGGTAGGCAAGGACAAACGTGCACTGAAAGTTGCAAAGAAAAAGTTGGGAACCCACAAGAGGGCAAAGAAGAAGCGCGAGGAGATGTCCAATGTCCTCCGTAAGATCAGGGCTGGTGGTGGAGCTTCGGAAAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

11.32

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	23, 252, 253
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	43
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	77, 187, 317
AluI	AGCT	3 cut(s)	77, 187, 317
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	64, 143
BmiI	GGNNCC	2 cut(s)	6, 244
BmrFI	CCNGG	2 cut(s)	64, 143
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 252, 253
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	23, 252, 253
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	23, 252, 253
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	91, 138, 297
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	6, 244
BspPI	GGATC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	91, 138, 297
Bst2UI	CCWGG	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	94, 141, 300
BstMBI	GATC	3 cut(s)	91, 138, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	62, 141
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	21, 180, 215
CfoI	GCGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	119
CviJI	RGCY	7 cut(s)	5, 16, 51, 77, 187, 305, 317
CviKI_1	RGCY	7 cut(s)	5, 16, 51, 77, 187, 305, 317
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	3 cut(s)	93, 140, 299
DpnII	GATC	3 cut(s)	91, 138, 297
DraIII	CACNNNGTG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	62
FaiI	YATR	3 cut(s)	56, 166, 168
FauNDI	CATATG	1 cut(s)	166
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	142
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	121, 215
Hpy188I	TCNGA	2 cut(s)	91, 322
Hpy8I	GTNNAC	2 cut(s)	121, 215
HpyAV	CCTTC	2 cut(s)	61, 96
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	161, 215, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	211
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	91, 138, 297
LmnI	GCTCC	3 cut(s)	10, 82, 314
LpnPI	CCDG	7 cut(s)	9, 49, 76, 138, 155, 286, 291
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	93, 140, 299
MboI	GATC	3 cut(s)	91, 138, 297
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	71, 133
MnlI	CCTC	3 cut(s)	246, 265, 299
MseI	TTAA	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	2 cut(s)	64, 143
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	91, 138, 297
NlaIV	GGNNCC	2 cut(s)	6, 244
NmuCI	GTSAC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	6, 244
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	91, 138, 297
ScrFI	CCNGG	2 cut(s)	64, 143
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	79, 189, 198, 214, 319
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	2 cut(s)	71, 133
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	62, 141
TaiI	ACGT	1 cut(s)	214
TasI	AATT	2 cut(s)	71, 133
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	28, 187, 222
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	28, 187, 222
Vha464I	CTTAAG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.