Prupe.6G253400_v2.0.a1

Belongs to the eukaryotic ribosomal protein eL36 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
24709144 .. 24711303
2160 bp
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UTR
Exon/CDS
Intron
Prupe.6G253400.1

Sequence Viewer

Length: 333 bp
ATGGCTCCTGCTGCGCCCAAGAGCGGGATCTTCGTTGGTCTGAACAAAGGCCATATCGTCACCAAGCGTGAATTGGCTCCTCGCCCATCTGACCGCAAAGGGAAAACAAGCAAGAGGGTGCATTTCGTGAGGAACCTGATCAGGGAAGTTGCTGGTTTTGCTCCATATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTAAGGACAAGCGTGCTCTTAAGGTGGCCAAGAGGAAGTTGGGTACCCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAACGTCCTCCGCAAGATGAGGTCTGGTGGTGTTACTGAGAAGAAGAAGTGA

Protein Analysis

111

Amino Acids

12.46

Weight (kDa)

11.43

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 3 cut(s) 24, 94, 292
AclWI GGATC 2 cut(s) 35, 185
AcoI YGGCCR 1 cut(s) 225
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 23, 24, 142
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 2 cut(s) 187, 257
AluI AGCT 2 cut(s) 187, 257
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 35, 185
AoxI GGCC 2 cut(s) 49, 225
ApeKI GCWGC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 52
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 94
BclI TGATCA 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 4 cut(s) 6, 78, 134, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 24, 142
BseLI CCNNNNNNNGG 3 cut(s) 23, 24, 142
BseMII CTCAG 2 cut(s) 174, 309
BseRI GAGGAG 2 cut(s) 69, 287
BshFI GGCC 2 cut(s) 51, 227
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 23, 24, 142
BsnI GGCC 2 cut(s) 51, 227
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 27, 138, 177
BspACI CCGC 3 cut(s) 24, 94, 292
BspANI GGCC 2 cut(s) 51, 227
BspCNI CTCAG 2 cut(s) 175, 310
BspLI GGNNCC 4 cut(s) 6, 78, 134, 244
BspPI GGATC 2 cut(s) 35, 185
BspT107I GGYRCC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 24
BssMI GATC 3 cut(s) 27, 138, 177
Bst6I CTCTTC 2 cut(s) 167, 260
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 183, 258, 318
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 30, 141, 180
BstMBI GATC 3 cut(s) 27, 138, 177
BstMWI GCNNNNNNNGC 2 cut(s) 11, 158
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 51, 227
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 243
CviJI RGCY 6 cut(s) 5, 51, 77, 187, 227, 257
CviKI_1 RGCY 6 cut(s) 5, 51, 77, 187, 227, 257
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 3 cut(s) 183, 258, 318
DpnI GATC 3 cut(s) 29, 140, 179
DpnII GATC 3 cut(s) 27, 138, 177
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 167, 260
EarI CTCTTC 2 cut(s) 167, 260
FaiI YATR 3 cut(s) 54, 166, 168
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 51, 227
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 42, 91
Hpy188III TCNNGA 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 158
HpyF3I CTNAG 3 cut(s) 183, 258, 318
HpySE526I ACGT 1 cut(s) 285
HspAI GCGC 1 cut(s) 14
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 27, 138, 177
LmnI GCTCC 3 cut(s) 10, 82, 166
LpnPI CCDG 5 cut(s) 21, 127, 138, 149, 291
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 58, 313
MalI GATC 3 cut(s) 29, 140, 179
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 27, 138, 177
MboII GAAGA 4 cut(s) 22, 184, 274, 277
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 8 cut(s) 90, 108, 123, 168, 225, 265, 294, 299
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 227
MspCI CTTAAG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 11, 158
NdeI CATATG 1 cut(s) 166
NdeII GATC 3 cut(s) 27, 138, 177
NlaIV GGNNCC 4 cut(s) 6, 78, 134, 244
NmuCI GTSAC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 4 cut(s) 6, 78, 134, 244
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 27, 138, 177
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 138, 189, 198, 225, 259, 288, 305
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 71
SsiI CCGC 3 cut(s) 24, 94, 292
TaiI ACGT 1 cut(s) 288
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 58
TspRI CASTG 1 cut(s) 187
Vha464I CTTAAG 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.