Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003363

Physical Location & Seq

Genomic Coordinates Forward (+)

3425522 .. 3427461

Gene Structure 1940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATACAGTAAAGGATGACAACGAGATGAGACAAGGCCCAATTGTTATTCGTCATCCACATATAAAATCCAAGCTCAAAGCCAAAAACCCTAGCCCTTCTGATTGCTCCGTCTCCCCTCCAACTCTGACCGATCCAGAGGTAATGGCTCCAGCACAACCGAAAACCGGGCTCTTTGTGGGATTGAACAAGGGGCACATAACCACCAAGAAAGAGTTGGCTCCACGCCCTTCTGATCGCAAAGGAAAAACCAGTAAGAGGGTGCACTTTGTTAGGAACTTGATCCGTGAAGTTGCTGGGTTTGCACCGTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGCAAGGACAAGCGTGCACTGAAGGTAGCTAAAAGAAAGTTAGGAACCCACAAGAGGGCTAAGAAGAAGCGTGAGGAGATGTCGAATGTCCTTCGCAAGATGAGGTCTGGTGGTGGAGCTACTGAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

10.7

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	56 - 149	7.2e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37600 AT2G37600 AT3G53740 AT3G53740 AT3G53740 AT3G53740 AT5G02450
fragaria_vesca	FvH4_5g14631 FvH4_5g26401 FvH4_6g13991 FvH4_7g29761
malus_domestica	MD04G1126700.v1.1 MD07G1178200.v1.1 MD12G1078300.v1.1
prunus_persica	Prupe.2G296800_v2.0.a1 Prupe.2G296800_v2.0.a1 Prupe.6G253400_v2.0.a1 Prupe.6G253400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377751 RchiOBHm_Chr3g0466821
rosa_laevigata	RLG00000024549 RLG00000026501
rosa_multiflora	Rmu_co8105242.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281090 Rroxscaffold_6G00414110
rosa_rugosa	Rorug01G0404600 Rorug01G0404700 Rorug03G0083900 Rorug03G0083900 Rorug03G0083900 Rorug05G0205400
rosa_samantha	Rh1BG381700 Rh1DG412700 Rh3BG152600
rosa_wichuraiana	Rw1G037090 Rw3G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	128, 277
AcuI	CTGAAG	1 cut(s)	383
AfiI	CCNNNNNNNGG	4 cut(s)	167, 258, 396, 397
AgsI	TTSAA	2 cut(s)	187, 337
AluBI	AGCT	4 cut(s)	76, 331, 371, 461
AluI	AGCT	4 cut(s)	76, 331, 371, 461
Alw21I	GWGCWC	2 cut(s)	267, 361
Alw26I	GTCTC	2 cut(s)	25, 118
Alw44I	GTGCAC	2 cut(s)	263, 357
AlwI	GGATC	2 cut(s)	128, 277
AoxI	GGCC	1 cut(s)	37
ApaLI	GTGCAC	2 cut(s)	263, 357
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	169
BaeGI	GKGCMC	3 cut(s)	198, 267, 361
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	267, 361
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	25, 118
BfaI	CTAG	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	150, 222, 388
BmrFI	CCNGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 258, 396, 397
Bse1I	ACTGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	22, 55
BseLI	CCNNNNNNNGG	4 cut(s)	167, 258, 396, 397
BseMII	CTCAG	2 cut(s)	318, 456
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	3 cut(s)	198, 267, 361
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	267, 361
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	4 cut(s)	167, 258, 396, 397
BsmAI	GTCTC	2 cut(s)	25, 118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	4 cut(s)	174, 198, 267, 361
Bsp143I	GATC	3 cut(s)	133, 235, 282
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	319, 457
BspLI	GGNNCC	3 cut(s)	150, 222, 388
BspPI	GGATC	2 cut(s)	128, 277
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	133, 235, 282
Bst4CI	ACNGT	2 cut(s)	10, 309
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	327, 402, 465
BstF5I	GGATG	2 cut(s)	22, 55
BstKTI	GATC	3 cut(s)	136, 238, 285
BstMAI	GTCTC	2 cut(s)	25, 118
BstMBI	GATC	3 cut(s)	133, 235, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	3 cut(s)	198, 267, 361
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	22, 55
BtsIMutI	CAGTG	2 cut(s)	324, 359
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	38
DdeI	CTNAG	3 cut(s)	327, 402, 465
DpnI	GATC	3 cut(s)	135, 237, 284
DpnII	GATC	3 cut(s)	133, 235, 282
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	118
FaiI	YATR	4 cut(s)	63, 65, 200, 312
FokI	GGATG	2 cut(s)	29, 42
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	168
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	265, 359
Hpy188I	TCNGA	3 cut(s)	103, 129, 235
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	265, 359
HpyAV	CCTTC	5 cut(s)	108, 240, 331, 358, 443
HpyCH4III	ACNGT	2 cut(s)	10, 309
HpyCH4V	TGCA	3 cut(s)	265, 305, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	327, 402, 465
Kzo9I	GATC	3 cut(s)	133, 235, 282
LmnI	GCTCC	4 cut(s)	113, 154, 226, 458
LpnPI	CCDG	6 cut(s)	150, 165, 181, 265, 282, 435
MaeI	CTAG	1 cut(s)	93
MalI	GATC	3 cut(s)	135, 237, 284
MboI	GATC	3 cut(s)	133, 235, 282
MboII	GAAGA	2 cut(s)	328, 418
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	4 cut(s)	174, 198, 267, 361
MluCI	AATT	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	129, 133, 252, 390, 409, 438
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	3 cut(s)	133, 235, 282
NlaIV	GGNNCC	3 cut(s)	150, 222, 388
PfeI	GAWTC	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	150, 222, 388
PspPI	GGNCC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	133, 235, 282
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	4 cut(s)	174, 198, 267, 361
SetI	ASST	8 cut(s)	78, 144, 333, 342, 369, 373, 449, 463
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	10, 309
TaqI	TCGA	1 cut(s)	425
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	2 cut(s)	331, 366
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	100, 275
TspRI	CASTG	2 cut(s)	331, 366
VneI	GTGCAC	2 cut(s)	263, 357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.