MD15G1089600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017629
Physical Location & Seq
Reverse (-)
6227172 .. 6229052
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1089600.v1.1.491

Sequence Viewer

Length: 1881 bp
ATGCGCCACCTCTACCAAATCCAAGCCCAACTCCTCACCAACCCAATACCCTCCATCGACCCAAACATCATCGCCGTCAAGCTCATCGCCGTCTCCGCCGCCCACGCCAACCCCCGCCACGCGGCGCTCTTATTCAACCATCACCTCAAAACCCCGAACATCTTCTCCTACAATGCCCTCCTCAAAGCATTCGCCCAAAACAATGACTGGCAAAACACGATATATTTTTTCAATCGGCAATTGGGTTCGCCGGATGCTCCGGATCCGGACGAGTACACCTTCACTTCGGTGCTCAAAGCCTGCGCCGGGATTGCACGAGTGGCGGAGGGCGAGAAAGTTCACTGCTTTGTTTCGAAATACGGGTGTGAATCCAATCTGTTTGTTAGAAATTCGCTTACTGATATGTATTTCAAGGTGGGTAATTTTGGGATTGCCCAGAAGCTATTTGATGAAATGTCTGTGAGAGATGTTGTTTCTTGGAACACTTTGGTTTCTGGGTATTGTTCGAGTGGGCAGGTTGAGAAGGCTAGGTGGGTGTTTGATGGGATGGAAGAGAAGACTTTGTTCTCTTGGTCGACTATGATCAGTGCGTATGCGAAGGCAGGTGAGTTGGAGGTGGCTCGGAGGCTTTTTGATGAGATGCCGGAGAGGAATGTGGTTTCTTGGAATGCAATGATTGCGGGGTATGCACAGAATGAGAAGTATGCTGAGGCTATTGAGATGTTTAGGCAAATGCAGCAATGTGGGGTGACGCCAAATGATGTTACGCTGATCAGTGTGCTGTCTGCTTGCGCTCACCTTGGTGCTCTTGACTTGGGGAAGTGGATTGATCGGTTTATAAGACGGAATGGGATGGAATTAGGTCTGTTTTTGGGGAATGCATTGGCGGATATGTATGCGAAGTGCGGCTGCATAATTGAGGCCAAACGCGTTTTTAACAAGATGCATGAGAGAGATGTGATATCTTGGAGCATTATCATCACTGGATTGGCCATGAATGGCCATGCTGATGAAGCTTTCGGGTGTTTCGACAAAATGATTGAGTATGAGGTGAAGCCGAATGACATTACTTTTATGGGATTACTGACAGCATGCACACACGCTGGCTTGATCGATAAGGGGCTTGAGTATTTTGATTTGATGGCCAAAGCATACGGGATCATTCCCAAGGTTGAGCATTATGGATGTGTGGTTGATCTTCTCAGTCGTGCCGGCCGCCTTATTGAAGCAGAGGATATGATCAACACAATGCCGATGCGGCCTAATGTTATAGTCTGGGGAGCATTGCTAGGTGGTTGCCGGATTTATAAAGATAGTGAGAGAGGGGAACGTGTAGTTCAGCGTATTCTTGAACTAGATTCCGATCATTCTGGAAGCTATGTTTATCTTGCTAATGTATATACGTCAATGGGTAGGCTAGACGATGCAGCAAGCTGTAGGCTGCAAATGCGAGATAAAGGCGTATCGAAAACACCTGGATGCAGCTGGATAGAGGTGGACAACATAGTTCATGAGTTCTTCATGGGAGACCTGTCGCATCCTCAGATGGACAAGATATATTCGATGATTAGAGAACTAAGGAGGAAAATGAAGCTAGCTGGGTACAAACCGAAGACGGATTTAGTCCTACATAATATCGATGAAGAAGAGAAAGAGGATGCGTTATTGGTTCATAGCGAGAGGCTAGCAATTGCATTCGGGCTGATTAGTACCAGTCCTGGAACCACAATTCGAATCGTGAAGAATTTGCGAGTTTGTAACGACTGCCACGATGCAACGAAACTAATCTCTAAAATTGTTGAGCGAGAGATTGTTGTGCGCGATCGCAGTCGGTTCCACCATTTCAAAGATGGGAAATGCTCTTGCAATGACTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

627

Amino Acids

70.76

Weight (kDa)

6.36

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 155 - 186 8.3e-07 PPR repeat family
PPR_1 PF12854 155 - 184 1.3e-07 PPR repeat
PPR PF01535 158 - 186 3.4e-08 PPR repeat
PPR_2 PF13041 188 - 219 3e-06 PPR repeat family
PPR PF01535 189 - 219 2e-08 PPR repeat
PPR_2 PF13041 217 - 266 1.8e-13 PPR repeat family
PPR PF01535 220 - 250 1.2e-08 PPR repeat
PPR_2 PF13041 318 - 366 6.5e-10 PPR repeat family
E_motif PF20431 436 - 498 9.3e-18 E motif
DYW_deaminase PF14432 534 - 626 4.1e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24230
malus_domestica MD15G1089600.v1.1
prunus_persica Prupe.1G444200_v2.0.a1
pyrus_communis pycom15g08400
rosa_chinensis RchiOBHm_Chr5g0043351
rosa_laevigata RLG00000034182
rosa_multiflora Rmu_sc0000060.1_g000011 Rmu_sc0000060.1_g000039
rosa_roxburghii Rroxscaffold_1G00037500
rosa_rugosa Rorug05G0205400
rosa_samantha Rh5CG327400
rosa_wichuraiana Rw5G027000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 839, 1308
AarI CACCTGC 1 cut(s) 593
Acc36I ACCTGC 2 cut(s) 505, 593
AccI GTMKAC 1 cut(s) 575
AccII CGCG 3 cut(s) 122, 930, 1821
AccIII TCCGGA 2 cut(s) 259, 265
AclWI GGATC 3 cut(s) 257, 270, 1166
AcoI YGGCCR 4 cut(s) 990, 1000, 1143, 1213
AcsI RAATTY 2 cut(s) 388, 1744
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 3 cut(s) 275, 1604, 1711
AfiI CCNNNNNNNGG 2 cut(s) 121, 306
AflIII ACRYGT 2 cut(s) 928, 1330
AgsI TTSAA 6 cut(s) 136, 232, 412, 1226, 1352, 1846
AjnI CCWGG 2 cut(s) 1474, 1717
AleI CACNNNNGTG 2 cut(s) 287, 801
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 8 cut(s) 82, 442, 1016, 1377, 1434, 1485, 1594, 1598
AluI AGCT 8 cut(s) 82, 442, 1016, 1377, 1434, 1485, 1594, 1598
Alw21I GWGCWC 2 cut(s) 294, 808
Alw26I GTCTC 2 cut(s) 97, 1521
AlwI GGATC 3 cut(s) 257, 270, 1166
Aor13HI TCCGGA 2 cut(s) 259, 265
AoxI GGCC 6 cut(s) 921, 990, 1000, 1143, 1213, 1259
ApeKI GCWGC 5 cut(s) 736, 909, 1427, 1441, 1482
ApoI RAATTY 2 cut(s) 388, 1744
AsiSI GCGATCGC 1 cut(s) 1825
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 5 cut(s) 6, 127, 305, 794, 1821
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 6 cut(s) 28, 134, 617, 760, 788, 1063
AsuII TTCGAA 2 cut(s) 353, 1732
AsuNHI GCTAGC 2 cut(s) 1594, 1684
BalI TGGCCA 3 cut(s) 992, 1002, 1145
BamHI GGATCC 1 cut(s) 262
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 563, 1619
Bbv12I GWGCWC 2 cut(s) 294, 808
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 5 cut(s) 748, 896, 1428, 1439, 1494
BccI CCATC 8 cut(s) 62, 147, 536, 541, 847, 1135, 1540, 1844
BceAI ACGGC 2 cut(s) 59, 74
BciT130I CCWGG 2 cut(s) 1476, 1719
BclI TGATCA 3 cut(s) 582, 771, 1239
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 97, 1521
BfaI CTAG 6 cut(s) 528, 1289, 1355, 1418, 1595, 1685
BfmI CTRYAG 1 cut(s) 1435
BfoI RGCGCY 1 cut(s) 128
BfuAI ACCTGC 2 cut(s) 505, 593
BglI GCCNNNNNGGC 1 cut(s) 1258
Bme1390I CCNGG 3 cut(s) 307, 1476, 1719
BmiI GGNNCC 3 cut(s) 264, 1723, 1835
BmrFI CCNGG 3 cut(s) 307, 1476, 1719
BmsI GCATC 9 cut(s) 244, 630, 933, 1245, 1414, 1469, 1546, 1648, 1762
BmtI GCTAGC 2 cut(s) 1598, 1688
BpiI GAAGAC 2 cut(s) 563, 1619
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 2 cut(s) 353, 1732
BpuEI CTTGAG 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 2 cut(s) 1113, 1638
BsaBI GATNNNNATC 1 cut(s) 1362
BsaHI GRCGYC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 1521
BsaJI CCNNGG 2 cut(s) 799, 1167
BsaWI WCCGGW 2 cut(s) 259, 265
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 306
Bse118I RCCGGY 1 cut(s) 1211
Bse1I ACTGG 4 cut(s) 212, 988, 1713, 1880
Bse3DI GCAATG 4 cut(s) 678, 746, 1283, 1873
Bse8I GATNNNNATC 1 cut(s) 1362
BseAI TCCGGA 2 cut(s) 259, 265
BseBI CCWGG 2 cut(s) 1476, 1719
BseCI ATCGAT 2 cut(s) 1113, 1638
BseDI CCNNGG 2 cut(s) 799, 1167
BseGI GGATG 7 cut(s) 259, 552, 858, 1190, 1484, 1537, 1663
BseJI GATNNNNATC 1 cut(s) 1362
BseLI CCNNNNNNNGG 2 cut(s) 121, 306
BseMI GCAATG 4 cut(s) 678, 746, 1283, 1873
BseMII CTCAG 3 cut(s) 699, 1216, 1556
BseNI ACTGG 4 cut(s) 212, 988, 1713, 1880
BseRI GAGGAG 2 cut(s) 23, 170
BseX3I CGGCCG 1 cut(s) 1213
BseXI GCAGC 5 cut(s) 748, 896, 1428, 1439, 1494
BseYI CCCAGC 1 cut(s) 1598
Bsh1236I CGCG 3 cut(s) 122, 930, 1821
Bsh1285I CGRYCG 2 cut(s) 1216, 1825
BshFI GGCC 6 cut(s) 923, 992, 1002, 1145, 1215, 1261
BshVI ATCGAT 2 cut(s) 1113, 1638
BsiEI CGRYCG 2 cut(s) 1216, 1825
BsiHKAI GWGCWC 2 cut(s) 294, 808
BsiSI CCGG 7 cut(s) 251, 260, 266, 306, 644, 1212, 1300
BslI CCNNNNNNNGG 2 cut(s) 121, 306
BsmAI GTCTC 2 cut(s) 97, 1521
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 4 cut(s) 188, 673, 883, 1694
BsnI GGCC 6 cut(s) 923, 992, 1002, 1145, 1215, 1261
Bso31I GGTCTC 1 cut(s) 1521
Bsp119I TTCGAA 2 cut(s) 353, 1732
Bsp1286I GDGCHC 2 cut(s) 294, 808
Bsp13I TCCGGA 2 cut(s) 259, 265
BspANI GGCC 6 cut(s) 923, 992, 1002, 1145, 1215, 1261
BspCNI CTCAG 3 cut(s) 700, 1215, 1555
BspDI ATCGAT 2 cut(s) 1113, 1638
BspEI TCCGGA 2 cut(s) 259, 265
BspFNI CGCG 3 cut(s) 122, 930, 1821
BspHI TCATGA 1 cut(s) 1510
BspLI GGNNCC 3 cut(s) 264, 1723, 1835
BspMI ACCTGC 2 cut(s) 505, 593
BspOI GCTAGC 2 cut(s) 1598, 1688
BspPI GGATC 3 cut(s) 257, 270, 1166
BspT104I TTCGAA 2 cut(s) 353, 1732
BspTNI GGTCTC 1 cut(s) 1521
BsrDI GCAATG 4 cut(s) 678, 746, 1283, 1873
BsrFI RCCGGY 1 cut(s) 1211
BsrI ACTGG 4 cut(s) 212, 988, 1713, 1880
BssAI RCCGGY 1 cut(s) 1211
BssECI CCNNGG 2 cut(s) 799, 1167
BssNI GRCGYC 1 cut(s) 752
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 799, 1167
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 1476, 1719
Bst6I CTCTTC 2 cut(s) 546, 1641
BstACI GRCGYC 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 677
BstBI TTCGAA 2 cut(s) 353, 1732
BstC8I GCNNGC 8 cut(s) 301, 790, 1093, 1105, 1213, 1432, 1596, 1686
BstDEI CTNAG 4 cut(s) 708, 1202, 1542, 1577
BstF5I GGATG 7 cut(s) 259, 552, 858, 1190, 1484, 1537, 1663
BstFNI CGCG 3 cut(s) 122, 930, 1821
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 5 cut(s) 6, 127, 305, 794, 1821
BstMAI GTCTC 2 cut(s) 97, 1521
BstMCI CGRYCG 2 cut(s) 1216, 1825
BstNI CCWGG 2 cut(s) 1476, 1719
BstNSI RCATGY 1 cut(s) 1095
BstSCI CCNGG 3 cut(s) 305, 1474, 1717
BstSFI CTRYAG 1 cut(s) 1435
BstUI CGCG 3 cut(s) 122, 930, 1821
BstV1I GCAGC 5 cut(s) 748, 896, 1428, 1439, 1494
BstV2I GAAGAC 2 cut(s) 563, 1619
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 1213
Bsu15I ATCGAT 2 cut(s) 1113, 1638
BsuRI GGCC 6 cut(s) 923, 992, 1002, 1145, 1215, 1261
BsuTUI ATCGAT 2 cut(s) 1113, 1638
BtgZI GCGATG 2 cut(s) 55, 70
BtsCI GGATG 7 cut(s) 259, 552, 858, 1190, 1484, 1537, 1663
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 4 cut(s) 340, 592, 781, 981
BveI ACCTGC 2 cut(s) 505, 593
Cac8I GCNNGC 8 cut(s) 301, 790, 1093, 1105, 1213, 1432, 1596, 1686
CciI TCATGA 1 cut(s) 1510
CfoI GCGC 5 cut(s) 6, 127, 305, 794, 1821
Cfr10I RCCGGY 1 cut(s) 1211
ClaI ATCGAT 2 cut(s) 1113, 1638
CseI GACGC 1 cut(s) 760
Csp6I GTAC 3 cut(s) 274, 1603, 1710
CviAII CATG 6 cut(s) 947, 994, 1004, 1092, 1511, 1522
CviQI GTAC 3 cut(s) 274, 1603, 1710
DdeI CTNAG 4 cut(s) 708, 1202, 1542, 1577
EaeI YGGCCR 4 cut(s) 990, 1000, 1143, 1213
EagI CGGCCG 1 cut(s) 1213
Eam1104I CTCTTC 2 cut(s) 546, 1641
EarI CTCTTC 2 cut(s) 546, 1641
EciI GGCGGA 3 cut(s) 85, 338, 902
EclXI CGGCCG 1 cut(s) 1213
Eco130I CCWWGG 2 cut(s) 799, 1167
Eco31I GGTCTC 1 cut(s) 1521
Eco32I GATATC 1 cut(s) 963
Eco52I CGGCCG 1 cut(s) 1213
EcoRII CCWGG 2 cut(s) 1474, 1717
EcoRV GATATC 1 cut(s) 963
EcoT14I CCWWGG 2 cut(s) 799, 1167
EcoT22I ATGCAT 2 cut(s) 883, 948
ErhI CCWWGG 2 cut(s) 799, 1167
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 6 cut(s) 950, 997, 1007, 1095, 1514, 1525
FatI CATG 6 cut(s) 946, 993, 1003, 1091, 1510, 1521
FauI CCCGC 2 cut(s) 122, 673
FbaI TGATCA 3 cut(s) 582, 771, 1239
FblI GTMKAC 1 cut(s) 575
FokI GGATG 7 cut(s) 266, 559, 865, 1197, 1491, 1524, 1670
FspBI CTAG 6 cut(s) 528, 1289, 1355, 1418, 1595, 1685
GlaI GCGC 5 cut(s) 5, 126, 304, 793, 1820
GsaI CCCAGC 1 cut(s) 1602
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 6 cut(s) 923, 992, 1002, 1145, 1215, 1261
HapII CCGG 7 cut(s) 251, 260, 266, 306, 644, 1212, 1300
HgaI GACGC 1 cut(s) 760
HhaI GCGC 5 cut(s) 6, 127, 305, 794, 1821
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 6 cut(s) 950, 997, 1007, 1095, 1514, 1525
Hin6I GCGC 5 cut(s) 4, 125, 303, 792, 1819
HinP1I GCGC 5 cut(s) 4, 125, 303, 792, 1819
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 1014
HinfI GANTC 3 cut(s) 368, 1358, 1734
HpaII CCGG 7 cut(s) 251, 260, 266, 306, 644, 1212, 1300
HphI GGTGA 6 cut(s) 28, 134, 617, 760, 788, 1063
Hpy166II GTNNAC 4 cut(s) 276, 340, 576, 1498
Hpy188I TCNGA 3 cut(s) 624, 1363, 1545
Hpy188III TCNNGA 7 cut(s) 260, 266, 809, 1349, 1371, 1511, 1738
Hpy8I GTNNAC 4 cut(s) 276, 340, 576, 1498
HpyAV CCTTC 3 cut(s) 289, 517, 592
HpyCH4IV ACGT 2 cut(s) 1330, 1403
HpyF3I CTNAG 4 cut(s) 708, 1202, 1542, 1577
HpySE526I ACGT 2 cut(s) 1330, 1403
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 6 cut(s) 950, 997, 1007, 1095, 1514, 1525
HspAI GCGC 5 cut(s) 4, 125, 303, 792, 1819
Kpn2I TCCGGA 2 cut(s) 259, 265
KroI GCCGGC 1 cut(s) 1211
KroNI GCCGGC 1 cut(s) 1213
Ksp22I TGATCA 3 cut(s) 582, 771, 1239
LmnI GCTCC 3 cut(s) 262, 969, 1280
Lsp1109I GCAGC 5 cut(s) 748, 896, 1428, 1439, 1494
LweI GCATC 9 cut(s) 244, 630, 933, 1245, 1414, 1469, 1546, 1648, 1762
MaeI CTAG 6 cut(s) 528, 1289, 1355, 1418, 1595, 1685
MaeII ACGT 2 cut(s) 1330, 1403
MaeIII GTNAC 3 cut(s) 748, 763, 1757
MboII GAAGA 9 cut(s) 154, 563, 568, 1190, 1510, 1624, 1655, 1658, 1753
MfeI CAATTG 2 cut(s) 239, 1689
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 294, 808
MlsI TGGCCA 3 cut(s) 992, 1002, 1145
MluCI AATT 9 cut(s) 239, 388, 421, 857, 915, 1689, 1728, 1744, 1794
MluI ACGCGT 1 cut(s) 928
MluNI TGGCCA 3 cut(s) 992, 1002, 1145
MmeI TCCRAC 1 cut(s) 591
Mox20I TGGCCA 3 cut(s) 992, 1002, 1145
Mph1103I ATGCAT 2 cut(s) 883, 948
MroI TCCGGA 2 cut(s) 259, 265
MroNI GCCGGC 1 cut(s) 1211
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 3 cut(s) 992, 1002, 1145
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 4 cut(s) 287, 801, 1008, 1477
Msp20I TGGCCA 3 cut(s) 992, 1002, 1145
MspA1I CMGCKG 1 cut(s) 1485
MspI CCGG 7 cut(s) 251, 260, 266, 306, 644, 1212, 1300
MspR9I CCNGG 3 cut(s) 307, 1476, 1719
MunI CAATTG 2 cut(s) 239, 1689
Mva1269I GAATGC 4 cut(s) 188, 673, 883, 1694
MvaI CCWGG 2 cut(s) 1476, 1719
MvnI CGCG 3 cut(s) 122, 930, 1821
NaeI GCCGGC 1 cut(s) 1213
NciI CCSGG 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 1211
NheI GCTAGC 2 cut(s) 1594, 1684
NlaIII CATG 6 cut(s) 950, 997, 1007, 1095, 1514, 1525
NlaIV GGNNCC 3 cut(s) 264, 1723, 1835
NmuCI GTSAC 1 cut(s) 748
NsiI ATGCAT 2 cut(s) 883, 948
NspI RCATGY 1 cut(s) 1095
NspV TTCGAA 2 cut(s) 353, 1732
OliI CACNNNNGTG 2 cut(s) 287, 801
PaeI GCATGC 1 cut(s) 1095
PagI TCATGA 1 cut(s) 1510
PaqCI CACCTGC 1 cut(s) 593
PcsI WCGNNNNNNNCGW 2 cut(s) 1026, 1767
PctI GAATGC 4 cut(s) 188, 673, 883, 1694
PdiI GCCGGC 1 cut(s) 1213
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 368, 1358, 1734
PfoI TCCNGGA 1 cut(s) 1717
Ple19I CGATCG 1 cut(s) 1825
PsiI TTATAA 2 cut(s) 839, 1308
Psp6I CCWGG 2 cut(s) 1474, 1717
PspFI CCCAGC 1 cut(s) 1598
PspGI CCWGG 2 cut(s) 1474, 1717
PspN4I GGNNCC 3 cut(s) 264, 1723, 1835
PsuI RGATCY 1 cut(s) 262
PvuI CGATCG 1 cut(s) 1825
PvuII CAGCTG 1 cut(s) 1485
RgaI GCGATCGC 1 cut(s) 1825
RsaI GTAC 3 cut(s) 275, 1604, 1711
RsaNI GTAC 3 cut(s) 274, 1603, 1710
RseI CAYNNNNRTG 4 cut(s) 287, 801, 1008, 1477
SalI GTCGAC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 936
ScrFI CCNGG 3 cut(s) 307, 1476, 1719
SduI GDGCHC 2 cut(s) 294, 808
SfaAI GCGATCGC 1 cut(s) 1825
SfaNI GCATC 9 cut(s) 244, 630, 933, 1245, 1414, 1469, 1546, 1648, 1762
SfcI CTRYAG 1 cut(s) 1435
SfuI TTCGAA 2 cut(s) 353, 1732
SgfI GCGATCGC 1 cut(s) 1825
SmiMI CAYNNNNRTG 4 cut(s) 287, 801, 1008, 1477
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
SphI GCATGC 1 cut(s) 1095
Sse9I AATT 9 cut(s) 239, 388, 421, 857, 915, 1689, 1728, 1744, 1794
SspMI CTAG 6 cut(s) 528, 1289, 1355, 1418, 1595, 1685
StyD4I CCNGG 3 cut(s) 305, 1474, 1717
StyI CCWWGG 2 cut(s) 799, 1167
TaiI ACGT 2 cut(s) 1333, 1406
TasI AATT 9 cut(s) 239, 388, 421, 857, 915, 1689, 1728, 1744, 1794
TatI WGTACW 1 cut(s) 273
TauI GCSGC 5 cut(s) 101, 125, 909, 1218, 1261
TfiI GAWTC 3 cut(s) 368, 1358, 1734
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 4 cut(s) 347, 592, 781, 988
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 5 cut(s) 736, 909, 1427, 1441, 1482
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 8 cut(s) 465, 1010, 1026, 1499, 1510, 1604, 1656, 1661
TspGWI ACGGA 2 cut(s) 859, 1631
TspRI CASTG 4 cut(s) 347, 592, 781, 988
XapI RAATTY 2 cut(s) 388, 1744
XceI RCATGY 1 cut(s) 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 1847
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 6 cut(s) 528, 1289, 1355, 1418, 1595, 1685
Zsp2I ATGCAT 2 cut(s) 883, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.