FvH4_3g24731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018820
Physical Location & Seq
Forward (+)
17846342 .. 17850472
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24731.t1

Sequence Viewer

Length: 999 bp
ATGAGAGAGGTGTGGAGGCCGGAGAGGAAGAGACGAGCCGACGCCGGAGAGGAAGAGACGTGCGCAGGTCGAAGCCGGAGAGGAAGAGAGCCGCGGAGGCCGGAGAGGAAGAGAGCCGTGTGTCGTCGTCTAGTCGAAAGGCAGAGAGGAGCCGAAGAGAGGAAGAGAGCCGCGGAGGCCGGAGAGAAAGAGAGGCGTGCGTCGTCGTCTAGTCGAAAGGCAGAGAGGAAGAGCCAAAGAGAGGCGTCTTGTTGTACTAAATTCATTGTCACATACTATATTCGCTCCTTCGGAGCTGAGAAAAACCGTAGCCTAAGGTTTCGCGAAACAGGGTGCGATGACCTCAGTCTACGCCTGTGCTGGGTGGCATACGATCTACTAGCAGAAGTTCTTTTTCGTTTGGGATCAAGATCTGGTTCGGGTTGTTGCTTGAAGTTGGTTTCGTGGAAGTGGAAGCGCTATACCGACATCTTGGGTGTGATGACGCATGCGGCGGAGGCAAGCATTGCAAAGGTAAATATTGAGGAGGAAGCCGAAGAAGAGGACAATGATGATTCAAAGGACTGGGCGATGATTTCCTATAAGCTTGTTCTAAAAAAGTCAGAGAACCGCTCCTTTACAATCAAGGCTCCAAGAGGTCTGAAGTTATCTACCATGTCGATTGGTCCAGGATCTTATGATAACATCATGGGATGTGACTTTTCACAACAGAGGGTGTTCGGAGTTTATTCACTGAGTAGGTTTGTTGATAAACAATGGCGCTGGAAGAAATTAGCAGATATTGAGATTGGTTTCGGCAAGCCTTCTACATATCTCCTAATTGTAAGGTTCACGAAAACCGAGGAACAATACCTCTGTTTTCTAAAGGATGACCGCTCATTTATAGGCTGCAGCTCTGTGTTTCCTCATAATGAACAATGGCTTTCAAATGTGTTGTACACTGATATGGCTTCCCGGTTCTCCACAGTAAGCATTGTGCCTAGAAGGTTCAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

38.62

Weight (kDa)

9.65

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018820)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24731 FvH4_6g52620 FvH4_6g52620 FvH4_6g52620
prunus_persica Prupe.8G121800_v2.0.a1
rosa_laevigata RLG00000022281
rosa_roxburghii Rroxscaffold_1G00066580 Rroxscaffold_6G00419070
rosa_samantha Rh5BG261400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 56
AccBSI CCGCTC 2 cut(s) 612, 876
AccI GTMKAC 1 cut(s) 349
AccII CGCG 3 cut(s) 94, 173, 324
AciI CCGC 8 cut(s) 92, 94, 171, 173, 491, 494, 610, 874
AclWI GGATC 2 cut(s) 412, 679
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 2 cut(s) 42, 245
AfaI GTAC 2 cut(s) 256, 938
AfeI AGCGCT 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 159, 241, 361
AgsI TTSAA 4 cut(s) 433, 558, 927, 991
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 3 cut(s) 296, 586, 894
AluI AGCT 3 cut(s) 296, 586, 894
Alw26I GTCTC 2 cut(s) 25, 50
AlwI GGATC 2 cut(s) 412, 679
Aor51HI AGCGCT 1 cut(s) 458
AoxI GGCC 3 cut(s) 17, 98, 177
ApeKI GCWGC 2 cut(s) 888, 891
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 3 cut(s) 65, 459, 762
AspS9I GGNCC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 955
AvaII GGWCC 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 314
BbvI GCAGC 2 cut(s) 875, 903
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 669
BcnI CCSGG 1 cut(s) 955
BcoDI GTCTC 2 cut(s) 25, 50
BfaI CTAG 4 cut(s) 131, 210, 380, 981
BfmI CTRYAG 1 cut(s) 889
BfoI RGCGCY 2 cut(s) 460, 763
BfuAI ACCTGC 1 cut(s) 56
BglI GCCNNNNNGGC 2 cut(s) 97, 176
BglII AGATCT 1 cut(s) 410
BisI GCNGC 5 cut(s) 92, 171, 492, 889, 892
BlsI GCNGC 5 cut(s) 93, 172, 493, 890, 893
Bme1390I CCNGG 2 cut(s) 669, 955
Bme18I GGWCC 1 cut(s) 665
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 2 cut(s) 151, 630
BmrFI CCNGG 2 cut(s) 669, 955
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BoxI GACNNNNGTC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpuMI CCSGG 1 cut(s) 955
BsaBI GATNNNNATC 1 cut(s) 409
BsaHI GRCGYC 2 cut(s) 42, 245
BsaJI CCNNGG 3 cut(s) 92, 171, 840
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 241, 361
Bse1I ACTGG 1 cut(s) 569
Bse21I CCTNAGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 409
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 3 cut(s) 92, 171, 840
BseGI GGATG 2 cut(s) 698, 874
BseJI GATNNNNATC 1 cut(s) 409
BseLI CCNNNNNNNGG 3 cut(s) 159, 241, 361
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 3 cut(s) 288, 358, 725
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 2 cut(s) 162, 539
BseXI GCAGC 2 cut(s) 875, 903
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 3 cut(s) 94, 173, 324
BshFI GGCC 3 cut(s) 19, 100, 179
BsiSI CCGG 6 cut(s) 20, 45, 76, 101, 180, 955
BslI CCNNNNNNNGG 3 cut(s) 159, 241, 361
BsmAI GTCTC 2 cut(s) 25, 50
BsmBI CGTCTC 2 cut(s) 25, 50
BsnI GGCC 3 cut(s) 19, 100, 179
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 4 cut(s) 373, 404, 410, 671
Bsp68I TCGCGA 1 cut(s) 324
BspACI CCGC 8 cut(s) 92, 94, 171, 173, 491, 494, 610, 874
BspANI GGCC 3 cut(s) 19, 100, 179
BspCNI CTCAG 3 cut(s) 289, 357, 726
BspFNI CGCG 3 cut(s) 94, 173, 324
BspLI GGNNCC 2 cut(s) 151, 630
BspMAI CTGCAG 1 cut(s) 893
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 412, 679
BspQI GCTCTTC 1 cut(s) 224
BsrBI CCGCTC 2 cut(s) 612, 876
BsrDI GCAATG 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 3 cut(s) 92, 171, 840
BssMI GATC 4 cut(s) 373, 404, 410, 671
BssNI GRCGYC 2 cut(s) 42, 245
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 308, 967
Bst6I CTCTTC 8 cut(s) 23, 48, 79, 104, 150, 158, 224, 534
BstACI GRCGYC 2 cut(s) 42, 245
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 936
BstC8I GCNNGC 4 cut(s) 198, 489, 502, 800
BstDEI CTNAG 4 cut(s) 297, 314, 344, 734
BstDSI CCRYGG 2 cut(s) 92, 171
BstF5I GGATG 2 cut(s) 698, 874
BstFNI CGCG 3 cut(s) 94, 173, 324
BstH2I RGCGCY 2 cut(s) 460, 763
BstHHI GCGC 3 cut(s) 65, 459, 762
BstKTI GATC 4 cut(s) 376, 407, 413, 674
BstMAI GTCTC 2 cut(s) 25, 50
BstMBI GATC 4 cut(s) 373, 404, 410, 671
BstMWI GCNNNNNNNGC 4 cut(s) 97, 176, 497, 506
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 667, 953
BstSFI CTRYAG 1 cut(s) 889
BstUI CGCG 3 cut(s) 94, 173, 324
BstV1I GCAGC 2 cut(s) 875, 903
BstX2I RGATCY 2 cut(s) 410, 671
BstYI RGATCY 2 cut(s) 410, 671
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 3 cut(s) 19, 100, 179
BtgI CCRYGG 2 cut(s) 92, 171
BtgZI GCGATG 2 cut(s) 351, 584
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 698, 874
BtsIMutI CAGTG 2 cut(s) 731, 939
BtuMI TCGCGA 1 cut(s) 324
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 4 cut(s) 198, 489, 502, 800
CfoI GCGC 3 cut(s) 65, 459, 762
Cfr13I GGNCC 1 cut(s) 665
Cfr42I CCGCGG 2 cut(s) 95, 174
CseI GACGC 4 cut(s) 50, 189, 234, 493
Csp6I GTAC 2 cut(s) 255, 937
CviAII CATG 3 cut(s) 488, 655, 688
CviQI GTAC 2 cut(s) 255, 937
DdeI CTNAG 4 cut(s) 297, 314, 344, 734
DpnI GATC 4 cut(s) 375, 406, 412, 673
DpnII GATC 4 cut(s) 373, 404, 410, 671
Eam1104I CTCTTC 8 cut(s) 23, 48, 79, 104, 150, 158, 224, 534
EarI CTCTTC 8 cut(s) 23, 48, 79, 104, 150, 158, 224, 534
EciI GGCGGA 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 665
Eco47III AGCGCT 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 667
Esp3I CGTCTC 2 cut(s) 25, 50
FaeI CATG 3 cut(s) 491, 658, 691
FatI CATG 3 cut(s) 487, 654, 687
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 5 cut(s) 92, 171, 492, 889, 892
FokI GGATG 2 cut(s) 705, 881
Fsp4HI GCNGC 5 cut(s) 92, 171, 492, 889, 892
FspBI CTAG 4 cut(s) 131, 210, 380, 981
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 3 cut(s) 64, 458, 761
GluI GCNGC 5 cut(s) 92, 171, 492, 889, 892
GsaI CCCAGC 1 cut(s) 364
HaeII RGCGCY 2 cut(s) 460, 763
HaeIII GGCC 3 cut(s) 19, 100, 179
HapII CCGG 6 cut(s) 20, 45, 76, 101, 180, 955
HgaI GACGC 4 cut(s) 50, 189, 234, 493
HhaI GCGC 3 cut(s) 65, 459, 762
Hin1I GRCGYC 2 cut(s) 42, 245
Hin1II CATG 3 cut(s) 491, 658, 691
Hin6I GCGC 3 cut(s) 63, 457, 760
HinP1I GCGC 3 cut(s) 63, 457, 760
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 1 cut(s) 554
HpaII CCGG 6 cut(s) 20, 45, 76, 101, 180, 955
Hpy166II GTNNAC 3 cut(s) 350, 831, 939
Hpy188I TCNGA 4 cut(s) 293, 604, 642, 722
Hpy188III TCNNGA 4 cut(s) 323, 408, 832, 991
Hpy8I GTNNAC 3 cut(s) 350, 831, 939
Hpy99I CGWCG 4 cut(s) 44, 129, 205, 208
HpyAV CCTTC 3 cut(s) 298, 813, 978
HpyCH4III ACNGT 2 cut(s) 308, 967
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 509, 891
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 176, 497, 506
HpyF3I CTNAG 4 cut(s) 297, 314, 344, 734
HpySE526I ACGT 1 cut(s) 59
Hsp92I GRCGYC 2 cut(s) 42, 245
Hsp92II CATG 3 cut(s) 491, 658, 691
HspAI GCGC 3 cut(s) 63, 457, 760
KspI CCGCGG 2 cut(s) 95, 174
Kzo9I GATC 4 cut(s) 373, 404, 410, 671
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 5 cut(s) 149, 290, 293, 617, 634
Lsp1109I GCAGC 2 cut(s) 875, 903
MaeI CTAG 4 cut(s) 131, 210, 380, 981
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 268, 695
MalI GATC 4 cut(s) 375, 406, 412, 673
MbiI CCGCTC 2 cut(s) 612, 876
MboI GATC 4 cut(s) 373, 404, 410, 671
MflI RGATCY 2 cut(s) 410, 671
MluCI AATT 3 cut(s) 260, 770, 819
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 2 cut(s) 94, 173
MspI CCGG 6 cut(s) 20, 45, 76, 101, 180, 955
MspR9I CCNGG 2 cut(s) 669, 955
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 3 cut(s) 94, 173, 324
MwoI GCNNNNNNNGC 4 cut(s) 97, 176, 497, 506
NciI CCSGG 1 cut(s) 955
NdeII GATC 4 cut(s) 373, 404, 410, 671
NlaIII CATG 3 cut(s) 491, 658, 691
NlaIV GGNNCC 2 cut(s) 151, 630
NmuCI GTSAC 2 cut(s) 268, 695
NruI TCGCGA 1 cut(s) 324
NsbI TGCGCA 1 cut(s) 64
NspI RCATGY 1 cut(s) 491
PaeI GCATGC 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 5 cut(s) 93, 172, 493, 890, 893
PshAI GACNNNNGTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 151, 630
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 893
PsuI RGATCY 2 cut(s) 410, 671
RruI TCGCGA 1 cut(s) 324
RsaI GTAC 2 cut(s) 256, 938
RsaNI GTAC 2 cut(s) 255, 937
RseI CAYNNNNRTG 1 cut(s) 944
SacII CCGCGG 2 cut(s) 95, 174
SapI GCTCTTC 1 cut(s) 224
SatI GCNGC 5 cut(s) 92, 171, 492, 889, 892
Sau3AI GATC 4 cut(s) 373, 404, 410, 671
Sau96I GGNCC 1 cut(s) 665
ScrFI CCNGG 2 cut(s) 669, 955
SfcI CTRYAG 1 cut(s) 889
Sfr303I CCGCGG 2 cut(s) 95, 174
SgrBI CCGCGG 2 cut(s) 95, 174
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 944
SphI GCATGC 1 cut(s) 491
Sse9I AATT 3 cut(s) 260, 770, 819
SsiI CCGC 8 cut(s) 92, 94, 171, 173, 491, 494, 610, 874
SspI AATATT 1 cut(s) 520
SspMI CTAG 4 cut(s) 131, 210, 380, 981
StyD4I CCNGG 2 cut(s) 667, 953
TaaI ACNGT 2 cut(s) 308, 967
TaiI ACGT 1 cut(s) 62
TaqI TCGA 4 cut(s) 70, 135, 214, 659
TasI AATT 3 cut(s) 260, 770, 819
TatI WGTACW 2 cut(s) 254, 936
TauI GCSGC 3 cut(s) 94, 173, 494
TfiI GAWTC 1 cut(s) 554
TscAI CASTG 2 cut(s) 738, 946
TseFI GTSAC 2 cut(s) 268, 695
TseI GCWGC 2 cut(s) 888, 891
Tsp45I GTSAC 2 cut(s) 268, 695
TspDTI ATGAA 2 cut(s) 253, 927
TspRI CASTG 2 cut(s) 738, 946
VpaK11BI GGWCC 1 cut(s) 665
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 4 cut(s) 131, 210, 380, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.