Rroxscaffold_6G00419070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018820
Physical Location & Seq
Reverse (-)
40602620 .. 40603275
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419070.1

Sequence Viewer

Length: 402 bp
ATGTTTGGGACGAAGGCTCGAGGCCGTGGGATTCTATGTCGAGAGCGAAGCGAGCAAAGCCATTCGAGTAAGGAAGATGGCGGTGGCCCGAAAATTCCAGATGTCTTTGCCGTAGCCGTGGACCATGAAGATGAGGCCACTAGGAGGAGAGACGAGGGGAAGCCATTGGCGGGTGAAGAGCTTGAGGCCTCTAGGAGAGGTGAAGTAGGATTTGGAGGATTTGATCCCTCGCCGATCGCGGTAGTCTTGCTCGATCAAGCAGAGCGAGAGCCACTAGGAAATGAGGAGAACTTGCTAAAGCGTGACTTTAGCTTAGCCGGGTTGCTAGGGCGTTACCCCCTTGCATGGCTGGTTCTGTACGGTTGTGGTCGCGGCACTACCGTCGGCTCCCGAGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.38

Weight (kDa)

5.3

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018820)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24731 FvH4_6g52620 FvH4_6g52620 FvH4_6g52620
prunus_persica Prupe.8G121800_v2.0.a1
rosa_laevigata RLG00000022281
rosa_roxburghii Rroxscaffold_1G00066580 Rroxscaffold_6G00419070
rosa_samantha Rh5BG261400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 239, 372
AciI CCGC 4 cut(s) 81, 170, 239, 372
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 144, 170, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 2 cut(s) 181, 312
AluI AGCT 2 cut(s) 181, 312
Alw26I GTCTC 2 cut(s) 144, 390
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 2 cut(s) 18, 390
AoxI GGCC 4 cut(s) 22, 85, 135, 186
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 86, 121
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 185, 212
AvaI CYCGRG 2 cut(s) 18, 390
AvaII GGWCC 1 cut(s) 121
BccI CCATC 1 cut(s) 71
BceAI ACGGC 3 cut(s) 9, 95, 101
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 144, 390
BfaI CTAG 5 cut(s) 141, 192, 275, 326, 400
BisI GCNGC 1 cut(s) 373
BlpI GCTNAGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 2 cut(s) 18, 390
BmgT120I GGNCC 2 cut(s) 86, 121
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 25, 117, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 170, 345
BseDI CCNNGG 3 cut(s) 25, 117, 391
BseLI CCNNNNNNNGG 3 cut(s) 144, 170, 345
BseRI GAGGAG 2 cut(s) 160, 299
Bsh1236I CGCG 2 cut(s) 239, 372
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 4 cut(s) 24, 87, 137, 188
BsiEI CGRYCG 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 18, 390
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 144, 170, 345
BsmAI GTCTC 2 cut(s) 144, 390
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 4 cut(s) 24, 87, 137, 188
BsoBI CYCGRG 2 cut(s) 18, 390
Bsp143I GATC 3 cut(s) 223, 234, 253
Bsp1720I GCTNAGC 1 cut(s) 313
BspACI CCGC 4 cut(s) 81, 170, 239, 372
BspANI GGCC 4 cut(s) 24, 87, 137, 188
BspFNI CGCG 2 cut(s) 239, 372
BspLI GGNNCC 1 cut(s) 388
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 171
BssECI CCNNGG 3 cut(s) 25, 117, 391
BssMI GATC 3 cut(s) 223, 234, 253
Bst4CI ACNGT 2 cut(s) 362, 382
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 313
BstDSI CCRYGG 2 cut(s) 25, 117
BstFNI CGCG 2 cut(s) 239, 372
BstKTI GATC 3 cut(s) 226, 237, 256
BstMAI GTCTC 2 cut(s) 144, 390
BstMBI GATC 3 cut(s) 223, 234, 253
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 52, 57
BstSCI CCNGG 1 cut(s) 317
BstUI CGCG 2 cut(s) 239, 372
BsuRI GGCC 4 cut(s) 24, 87, 137, 188
BtgI CCRYGG 2 cut(s) 25, 117
Cac8I GCNNGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 86, 121
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 125, 345
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 313
DpnI GATC 3 cut(s) 225, 236, 255
DpnII GATC 3 cut(s) 223, 234, 253
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 2 cut(s) 18, 390
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 128, 348
FaiI YATR 3 cut(s) 37, 126, 346
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 124, 344
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 5 cut(s) 141, 192, 275, 326, 400
GluI GCNGC 1 cut(s) 373
HaeIII GGCC 4 cut(s) 24, 87, 137, 188
HapII CCGG 1 cut(s) 318
Hin1II CATG 2 cut(s) 128, 348
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 185, 212
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 41, 98, 390
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 2 cut(s) 362, 382
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 57
HpyF3I CTNAG 1 cut(s) 313
Hsp92II CATG 2 cut(s) 128, 348
Kzo9I GATC 3 cut(s) 223, 234, 253
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 3 cut(s) 111, 331, 335
MaeI CTAG 5 cut(s) 141, 192, 275, 326, 400
MaeIII GTNAC 2 cut(s) 302, 332
MalI GATC 3 cut(s) 225, 236, 255
MboI GATC 3 cut(s) 223, 234, 253
MboII GAAGA 3 cut(s) 86, 140, 188
MluCI AATT 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 319
MvnI CGCG 2 cut(s) 239, 372
MwoI GCNNNNNNNGC 2 cut(s) 52, 57
NciI CCSGG 1 cut(s) 319
NdeII GATC 3 cut(s) 223, 234, 253
NlaIII CATG 2 cut(s) 128, 348
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 18
PceI AGGCCT 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 374
Ple19I CGATCG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 2 cut(s) 86, 121
PspXI VCTCGAGB 1 cut(s) 18
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 3 cut(s) 223, 234, 253
Sau96I GGNCC 2 cut(s) 86, 121
ScrFI CCNGG 1 cut(s) 319
SetI ASST 3 cut(s) 183, 202, 314
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 18, 182
SmoI CTYRAG 2 cut(s) 18, 182
Sse9I AATT 1 cut(s) 93
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 4 cut(s) 81, 170, 239, 372
SspMI CTAG 5 cut(s) 141, 192, 275, 326, 400
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 362, 382
TaqI TCGA 4 cut(s) 19, 40, 65, 252
TasI AATT 1 cut(s) 93
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 31
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 93
XhoI CTCGAG 1 cut(s) 18
XspI CTAG 5 cut(s) 141, 192, 275, 326, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.