Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018820

Physical Location & Seq

Genomic Coordinates Reverse (-)

88112153 .. 88130044

Gene Structure 17892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCGTCTAAAAGGAAAAGGGGTGGTTCATGGGGGTTGGGTTCAGCAGCCTTTGATACTGAAGCACCCATCTGTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAATGAGGCGTTGGTGAATGAGTGCCAATTGCTAGTCATTGGAGATGCCCTTACTCTCACACTCATCCCGGGAAGAATTGGTGAAGCCCAAAAGGTGTTCAATCAAATGCCCGAGAGAGATGGTTTTGCGTGGACTACAATGGTGCTTGACAAAGTGCGTTCTGTAAGTAATCTAGTGGTGAGAATACGCAGCAGGAATTTCAAGATAAAACAAAAACATAGGTGGGCACGGGAAACACCCCGGCCTAAATTAAGGCCCAAAAGGGCAGCCCAAGAGAATGAGTCCGGCAACAAGAGGCGGTCTTGGACGACGAGATCGATGTTTGGGATGAAGGCTCTAAGGCGGTGGGATTCGATGTCAAGAGCGAAGCGGCGAAGTTGTTCTAGGCGAGGAAGATGGCGGTGGCCTAAAAAGTCCGGTGATGTCGTCGCCGTAGCCGTGGACCATGAAGATGAGGCCACGTGGAAGAGAGATGAGGGGAAGCCATTGGTGGGTGAAGAGCTTGAGGCCTCGGGAGAGGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0033838 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

212

Amino Acids

24.18

Weight (kDa)

10.69

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018820)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24731 FvH4_6g52620 FvH4_6g52620 FvH4_6g52620
prunus_persica	Prupe.8G121800_v2.0.a1
rosa_laevigata	RLG00000022281
rosa_roxburghii	Rroxscaffold_1G00066580 Rroxscaffold_6G00419070
rosa_samantha	Rh5BG261400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	96, 409, 454, 481, 511
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	80
AcvI	CACGTG	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	73, 74, 602
AgsI	TTSAA	2 cut(s)	211, 313
AluBI	AGCT	1 cut(s)	613
AluI	AGCT	1 cut(s)	613
Ama87I	CYCGRG	3 cut(s)	178, 221, 622
AoxI	GGCC	5 cut(s)	353, 365, 515, 567, 618
ApeKI	GCWGC	3 cut(s)	46, 300, 377
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	366, 553
AsuC2I	CCSGG	3 cut(s)	179, 180, 352
AsuHPI	GGTGA	5 cut(s)	136, 203, 301, 542, 617
AvaI	CYCGRG	3 cut(s)	178, 221, 622
AvaII	GGWCC	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	340
BbrPI	CACGTG	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	58, 312, 389
BccI	CCATC	3 cut(s)	76, 224, 501
BceAI	ACGGC	2 cut(s)	527, 533
BcnI	CCSGG	3 cut(s)	179, 180, 352
BfaI	CTAG	3 cut(s)	143, 284, 495
BisI	GCNGC	4 cut(s)	47, 301, 378, 482
BlsI	GCNGC	4 cut(s)	48, 302, 379, 483
Bme1390I	CCNGG	3 cut(s)	179, 180, 352
Bme18I	GGWCC	1 cut(s)	553
BmeT110I	CYCGRG	3 cut(s)	178, 221, 622
BmgT120I	GGNCC	2 cut(s)	366, 553
BmrFI	CCNGG	3 cut(s)	179, 180, 352
BmsI	GCATC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	3 cut(s)	179, 180, 352
Bsa29I	ATCGAT	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	573
BsaJI	CCNNGG	4 cut(s)	178, 350, 549, 621
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 74, 602
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	4 cut(s)	178, 350, 549, 621
BseGI	GGATG	2 cut(s)	174, 444
BseLI	CCNNNNNNNGG	3 cut(s)	73, 74, 602
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	58, 312, 389
BshFI	GGCC	5 cut(s)	355, 367, 517, 569, 620
BshVI	ATCGAT	1 cut(s)	428
BsiHKCI	CYCGRG	3 cut(s)	178, 221, 622
BsiSI	CCGG	4 cut(s)	179, 352, 396, 528
BslI	CCNNNNNNNGG	3 cut(s)	73, 74, 602
BsnI	GGCC	5 cut(s)	355, 367, 517, 569, 620
BsoBI	CYCGRG	3 cut(s)	178, 221, 622
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	425
BspACI	CCGC	5 cut(s)	96, 409, 454, 481, 511
BspANI	GGCC	5 cut(s)	355, 367, 517, 569, 620
BspDI	ATCGAT	1 cut(s)	428
BspQI	GCTCTTC	1 cut(s)	603
BssECI	CCNNGG	4 cut(s)	178, 350, 549, 621
BssMI	GATC	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	572, 603
BstBAI	YACGTR	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	174, 444
BstKTI	GATC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	425
BstSCI	CCNGG	3 cut(s)	177, 178, 350
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	58, 312, 389
Bsu15I	ATCGAT	1 cut(s)	428
BsuRI	GGCC	5 cut(s)	355, 367, 517, 569, 620
BsuTUI	ATCGAT	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	174, 444
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	366, 553
Cfr9I	CCCGGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	428
CviAII	CATG	2 cut(s)	29, 557
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	427
DpnII	GATC	1 cut(s)	425
DraI	TTTAAA	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	572, 603
EarI	CTCTTC	2 cut(s)	572, 603
Eco147I	AGGCCT	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	80
Eco72I	CACGTG	1 cut(s)	573
Eco88I	CYCGRG	3 cut(s)	178, 221, 622
FaeI	CATG	2 cut(s)	32, 560
FaiI	YATR	3 cut(s)	30, 330, 558
FatI	CATG	2 cut(s)	28, 556
Fnu4HI	GCNGC	4 cut(s)	47, 301, 378, 482
FokI	GGATG	2 cut(s)	161, 451
Fsp4HI	GCNGC	4 cut(s)	47, 301, 378, 482
FspBI	CTAG	3 cut(s)	143, 284, 495
GluI	GCNGC	4 cut(s)	47, 301, 378, 482
HaeIII	GGCC	5 cut(s)	355, 367, 517, 569, 620
HapII	CCGG	4 cut(s)	179, 352, 396, 528
Hin1II	CATG	2 cut(s)	32, 560
HinfI	GANTC	3 cut(s)	88, 392, 461
HpaII	CCGG	4 cut(s)	179, 352, 396, 528
HphI	GGTGA	5 cut(s)	136, 203, 301, 542, 617
Hpy166II	GTNNAC	2 cut(s)	243, 553
Hpy188III	TCNNGA	3 cut(s)	313, 471, 624
Hpy8I	GTNNAC	2 cut(s)	243, 553
Hpy99I	CGWCG	2 cut(s)	424, 542
HpyAV	CCTTC	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	2 cut(s)	32, 560
Kzo9I	GATC	1 cut(s)	425
LguI	GCTCTTC	1 cut(s)	603
LpnPI	CCDG	5 cut(s)	192, 289, 365, 409, 541
Lsp1109I	GCAGC	3 cut(s)	58, 312, 389
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	143, 284, 495
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	427
MboI	GATC	1 cut(s)	425
MboII	GAAGA	5 cut(s)	195, 516, 572, 589, 620
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	4 cut(s)	137, 186, 307, 359
MlyI	GAGTC	2 cut(s)	82, 401
MnlI	CCTC	8 cut(s)	109, 399, 494, 559, 580, 610, 622, 631
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	2 cut(s)	110, 362
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	4 cut(s)	179, 352, 396, 528
MspR9I	CCNGG	3 cut(s)	179, 180, 352
MunI	CAATTG	1 cut(s)	137
NciI	CCSGG	3 cut(s)	179, 180, 352
NdeII	GATC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	32, 560
NmuCI	GTSAC	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	425, 546
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	48, 302, 379, 483
PleI	GAGTC	2 cut(s)	82, 400
PmaCI	CACGTG	1 cut(s)	573
PmlI	CACGTG	1 cut(s)	573
PpsI	GAGTC	2 cut(s)	82, 400
Ppu21I	YACGTR	1 cut(s)	573
PspCI	CACGTG	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	366, 553
RseI	CAYNNNNRTG	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	110, 362
SatI	GCNGC	4 cut(s)	47, 301, 378, 482
Sau3AI	GATC	1 cut(s)	425
Sau96I	GGNCC	2 cut(s)	366, 553
SchI	GAGTC	2 cut(s)	82, 401
ScrFI	CCNGG	3 cut(s)	179, 180, 352
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	5 cut(s)	207, 335, 575, 615, 633
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	553
SmaI	CCCGGG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	4 cut(s)	137, 186, 307, 359
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	5 cut(s)	96, 409, 454, 481, 511
SspMI	CTAG	3 cut(s)	143, 284, 495
StuI	AGGCCT	1 cut(s)	620
StyD4I	CCNGG	3 cut(s)	177, 178, 350
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	2 cut(s)	428, 464
TasI	AATT	4 cut(s)	137, 186, 307, 359
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	110, 362
Tru9I	TTAA	2 cut(s)	110, 362
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	46, 300, 377
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	17, 455, 573
TspMI	CCCGGG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	307
XmaI	CCCGGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	3 cut(s)	143, 284, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.