FvH4_6g52620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018820
Physical Location & Seq
Reverse (-)
38676775 .. 38679294
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52620.t3

Sequence Viewer

Length: 846 bp
ATGGCAGGATTTGATGCCCCCCCTGTGTCGACACGACTCAGAATTTCTGATCTTACATCAGAACAGAAGGTGATATTTGTGCAGAAACCAGATATCCTTTCAGTGCAAGAAGCCGATCTCTCCTTGCAAGTGCAAGAGGAGAGGATTTTCATACAGCCCTTGAACCCCACAAGCAGGCCTAAGATCCTGTACATTGAGAAGCATGAGGAGAATATTGCTTGGCACACTGAAGACTTGTCCTTCCTGCCTTGGAAAAACAGTGTGGAAATTGCGGGTCAGTGTTCCGGTTTTATTTGCTTTTTGGACACTCTAGAACATACGGTCTTTGTCTACAACACGAATAATCGCAAGATTGAGTATGAGATCCCCATTCCGGATCATCAAGCTTCAGTGTATGGCTTTGGAGAAACTGCTGCTGACTCTTCGTTCAAGCTAGTGCAGCCCGGCGTGATGTCTTCAGACTTTCATGTTCTTGATGCTTCTACAAAACAGTGGGTGAGATATTCTTGTGGAGTTGAGTCCGTAGTGAGATACAGAGGTCATGGAGTTTATGTACCCAAGCATAGTGTGCTTTTATGGATGGCCGAGTTAATAGTTGAGAAGAAAAATGAGGACATTAATCAGACCAAGGGCAGTGGTGATTCAATGAACAAGGACACAGAGTGGGCGATGATTGCGTTTAAGATTGGTCCATTAAAGTCAGAGAACCACCCCAAGTCAGAGAAACGCTCCTGGACAGTTGAGGCTCCAACAGATTTGTTGATGGAGAATGGCGTTGGACAAAATTGGCCAGCATTGAGATTGATGTCAACATTTCCAAATATATCCCCATTACAAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.83

Weight (kDa)

5.42

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018820)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24731 FvH4_6g52620 FvH4_6g52620 FvH4_6g52620
prunus_persica Prupe.8G121800_v2.0.a1
rosa_laevigata RLG00000022281
rosa_roxburghii Rroxscaffold_1G00066580 Rroxscaffold_6G00419070
rosa_samantha Rh5BG261400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 29, 330
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 1 cut(s) 272
AclWI GGATC 3 cut(s) 178, 358, 384
AcoI YGGCCR 2 cut(s) 582, 788
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 3 cut(s) 249, 372, 441
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 2 cut(s) 191, 555
AfiI CCNNNNNNNGG 2 cut(s) 174, 373
AgsI TTSAA 3 cut(s) 163, 430, 645
AjnI CCWGG 1 cut(s) 731
AluBI AGCT 2 cut(s) 386, 433
AluI AGCT 2 cut(s) 386, 433
AlwI GGATC 3 cut(s) 178, 358, 384
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 3 cut(s) 176, 582, 788
ApeKI GCWGC 2 cut(s) 413, 439
ApoI RAATTY 1 cut(s) 42
AseI ATTAAT 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 3 cut(s) 82, 508, 650
AvaII GGWCC 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 523, 556
BalI TGGCCA 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 237, 447
BbvI GCAGC 2 cut(s) 400, 451
BccI CCATC 2 cut(s) 574, 757
BciT130I CCWGG 1 cut(s) 733
BcnI CCSGG 1 cut(s) 444
BfaI CTAG 2 cut(s) 311, 434
BisI GCNGC 2 cut(s) 414, 440
BlsI GCNGC 2 cut(s) 415, 441
Bme1390I CCNGG 2 cut(s) 444, 733
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 2 cut(s) 444, 733
BmsI GCATC 2 cut(s) 4, 466
BpiI GAAGAC 2 cut(s) 237, 447
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpuMI CCSGG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 248, 627
BsaWI WCCGGW 2 cut(s) 284, 373
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 373
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 248, 627
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 2 cut(s) 174, 373
BseMII CTCAG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 152, 221
BseXI GCAGC 2 cut(s) 400, 451
BsgI GTGCAG 2 cut(s) 101, 458
BshFI GGCC 3 cut(s) 178, 584, 790
BsiSI CCGG 3 cut(s) 285, 374, 444
BslI CCNNNNNNNGG 2 cut(s) 174, 373
BsnI GGCC 3 cut(s) 178, 584, 790
Bsp13I TCCGGA 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 5 cut(s) 49, 115, 183, 363, 376
BspACI CCGC 1 cut(s) 272
BspANI GGCC 3 cut(s) 178, 584, 790
BspCNI CTCAG 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 373
BspHI TCATGA 1 cut(s) 842
BspLI GGNNCC 1 cut(s) 747
BspPI GGATC 3 cut(s) 178, 358, 384
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 248, 627
BssMI GATC 5 cut(s) 49, 115, 183, 363, 376
BssT1I CCWWGG 2 cut(s) 248, 627
Bst2UI CCWGG 1 cut(s) 733
Bst4CI ACNGT 4 cut(s) 260, 322, 492, 739
Bst6I CTCTTC 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 176, 792
BstDEI CTNAG 2 cut(s) 38, 180
BstF5I GGATG 1 cut(s) 585
BstKTI GATC 5 cut(s) 52, 118, 186, 366, 379
BstMBI GATC 5 cut(s) 49, 115, 183, 363, 376
BstMWI GCNNNNNNNGC 3 cut(s) 439, 568, 674
BstNI CCWGG 1 cut(s) 733
BstSCI CCNGG 2 cut(s) 442, 731
BstV1I GCAGC 2 cut(s) 400, 451
BstV2I GAAGAC 2 cut(s) 237, 447
BstX2I RGATCY 2 cut(s) 183, 363
BstYI RGATCY 2 cut(s) 183, 363
BsuRI GGCC 3 cut(s) 178, 584, 790
BtgZI GCGATG 1 cut(s) 683
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 7 cut(s) 108, 225, 265, 284, 396, 497, 640
Cac8I GCNNGC 2 cut(s) 176, 792
CciI TCATGA 1 cut(s) 842
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 190, 554
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 4 cut(s) 203, 467, 542, 843
CviQI GTAC 2 cut(s) 190, 554
DdeI CTNAG 2 cut(s) 38, 180
DpnI GATC 5 cut(s) 51, 117, 185, 365, 378
DpnII GATC 5 cut(s) 49, 115, 183, 363, 376
DraIII CACNNNGTG 1 cut(s) 663
EaeI YGGCCR 2 cut(s) 582, 788
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 248, 627
Eco147I AGGCCT 1 cut(s) 178
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 689
Eco57I CTGAAG 3 cut(s) 249, 372, 441
EcoRII CCWGG 1 cut(s) 731
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 248, 627
ErhI CCWWGG 2 cut(s) 248, 627
FaeI CATG 4 cut(s) 206, 470, 545, 846
FatI CATG 4 cut(s) 202, 466, 541, 842
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 2 cut(s) 29, 330
Fnu4HI GCNGC 2 cut(s) 414, 440
FokI GGATG 1 cut(s) 592
Fsp4HI GCNGC 2 cut(s) 414, 440
FspBI CTAG 2 cut(s) 311, 434
GluI GCNGC 2 cut(s) 414, 440
HaeIII GGCC 3 cut(s) 178, 584, 790
HapII CCGG 3 cut(s) 285, 374, 444
Hin1II CATG 4 cut(s) 206, 470, 545, 846
HincII GTYRAC 2 cut(s) 30, 810
HindII GTYRAC 2 cut(s) 30, 810
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 4 cut(s) 36, 419, 518, 641
HpaII CCGG 3 cut(s) 285, 374, 444
HphI GGTGA 3 cut(s) 82, 508, 650
Hpy166II GTNNAC 3 cut(s) 30, 331, 810
Hpy188I TCNGA 7 cut(s) 41, 49, 61, 460, 624, 703, 721
Hpy188III TCNNGA 4 cut(s) 311, 374, 473, 843
Hpy8I GTNNAC 3 cut(s) 30, 331, 810
HpyAV CCTTC 2 cut(s) 61, 250
HpyCH4III ACNGT 4 cut(s) 260, 322, 492, 739
HpyCH4V TGCA 5 cut(s) 82, 106, 127, 133, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 568, 674
HpyF3I CTNAG 2 cut(s) 38, 180
Hsp92II CATG 4 cut(s) 206, 470, 545, 846
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 5 cut(s) 49, 115, 183, 363, 376
LmnI GCTCC 2 cut(s) 734, 751
Lsp1109I GCAGC 2 cut(s) 400, 451
LweI GCATC 2 cut(s) 4, 466
MaeI CTAG 2 cut(s) 311, 434
MalI GATC 5 cut(s) 51, 117, 185, 365, 378
MboI GATC 5 cut(s) 49, 115, 183, 363, 376
MboII GAAGA 4 cut(s) 242, 414, 447, 613
MflI RGATCY 2 cut(s) 183, 363
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 3 cut(s) 42, 267, 784
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 3 cut(s) 30, 413, 527
MmeI TCCRAC 2 cut(s) 757, 773
MnlI CCTC 6 cut(s) 130, 135, 199, 530, 604, 736
Mox20I TGGCCA 1 cut(s) 790
MroI TCCGGA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 790
MseI TTAA 4 cut(s) 590, 618, 681, 695
Msp20I TGGCCA 1 cut(s) 790
MspI CCGG 3 cut(s) 285, 374, 444
MspR9I CCNGG 2 cut(s) 444, 733
MvaI CCWGG 1 cut(s) 733
MwoI GCNNNNNNNGC 3 cut(s) 439, 568, 674
NciI CCSGG 1 cut(s) 444
NdeII GATC 5 cut(s) 49, 115, 183, 363, 376
NlaIII CATG 4 cut(s) 206, 470, 545, 846
NlaIV GGNNCC 1 cut(s) 747
NmeAIII GCCGAG 1 cut(s) 610
PagI TCATGA 1 cut(s) 842
PceI AGGCCT 1 cut(s) 178
PfeI GAWTC 1 cut(s) 641
PfoI TCCNGGA 1 cut(s) 731
PkrI GCNGC 2 cut(s) 415, 441
PleI GAGTC 3 cut(s) 30, 413, 526
PpsI GAGTC 3 cut(s) 30, 413, 526
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 731
PspGI CCWGG 1 cut(s) 731
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 1 cut(s) 689
PsuI RGATCY 2 cut(s) 183, 363
RsaI GTAC 2 cut(s) 191, 555
RsaNI GTAC 2 cut(s) 190, 554
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 4 cut(s) 590, 618, 681, 695
SatI GCNGC 2 cut(s) 414, 440
Sau3AI GATC 5 cut(s) 49, 115, 183, 363, 376
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 3 cut(s) 30, 413, 527
ScrFI CCNGG 2 cut(s) 444, 733
SetI ASST 4 cut(s) 72, 388, 435, 541
SfaNI GCATC 2 cut(s) 4, 466
SinI GGWCC 1 cut(s) 689
Sse9I AATT 3 cut(s) 42, 267, 784
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 1 cut(s) 272
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 311, 434
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 442, 731
StyI CCWWGG 2 cut(s) 248, 627
TaaI ACNGT 4 cut(s) 260, 322, 492, 739
TaqI TCGA 1 cut(s) 29
TasI AATT 3 cut(s) 42, 267, 784
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 4 cut(s) 590, 618, 681, 695
Tru9I TTAA 4 cut(s) 590, 618, 681, 695
TscAI CASTG 7 cut(s) 108, 232, 265, 284, 396, 497, 640
TseI GCWGC 2 cut(s) 413, 439
TspDTI ATGAA 4 cut(s) 139, 455, 662, 831
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 7 cut(s) 108, 232, 265, 284, 396, 497, 640
VpaK11BI GGWCC 1 cut(s) 689
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 42
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 29, 330
XspI CTAG 2 cut(s) 311, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.