Rh5BG261400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018820
Physical Location & Seq
Reverse (-)
32725747 .. 32726067
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG261400.1

Sequence Viewer

Length: 321 bp
ATGTGGGACCGACTGTGGGACGACCACATCGACGTTTGGGACGAAGGCTCTGAGGCGGTGGGACTGGCTGTGGGATTCGATGTCGAGAGGGAAGCAGGCGAAGCCGTTCTGGGAGAGGAAGATGGTTGTGGCTTGAAAAGTCAAGCTGATGTTGTTGCCGTAGCCATGGACCATGAAGATGAGGCCACGTGGAGGAGAGACGAGGGGAAGCCATTGGCGGGTGAAGAGCTTGAGGTTGCTAGGAGAGGTGAAGTAGGATTTGGAGGATTTGATCCCCTGCTGATCGTAGTAGTCTTGCTCCGGTGGGTGTTTTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.73

Weight (kDa)

4.14

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018820)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24731 FvH4_6g52620 FvH4_6g52620 FvH4_6g52620
prunus_persica Prupe.8G121800_v2.0.a1
rosa_laevigata RLG00000022281
rosa_roxburghii Rroxscaffold_1G00066580 Rroxscaffold_6G00419070
rosa_samantha Rh5BG261400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 218
AclWI GGATC 1 cut(s) 266
AcvI CACGTG 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 16, 192, 218
AgsI TTSAA 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 146, 229
AluI AGCT 2 cut(s) 146, 229
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 7, 169
AsuHPI GGTGA 2 cut(s) 233, 260
AvaII GGWCC 2 cut(s) 7, 169
BbrPI CACGTG 1 cut(s) 189
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 89, 143
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 240
Bme18I GGWCC 2 cut(s) 7, 169
BmgT120I GGNCC 2 cut(s) 7, 169
BmiI GGNNCC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 192, 218
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 16, 192, 218
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 208
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 4 cut(s) 20, 32, 53, 75
BslI CCNNNNNNNGG 3 cut(s) 16, 192, 218
BsmAI GTCTC 1 cut(s) 192
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 4 cut(s) 20, 32, 53, 75
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 271, 282
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 2 cut(s) 56, 218
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 271, 282
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 165
BstKTI GATC 2 cut(s) 274, 285
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 271, 282
BstMWI GCNNNNNNNGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 7, 169
CviAII CATG 2 cut(s) 166, 173
CviJI RGCY 9 cut(s) 48, 68, 104, 132, 146, 164, 185, 211, 229
CviKI_1 RGCY 9 cut(s) 48, 68, 104, 132, 146, 164, 185, 211, 229
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 273, 284
DpnII GATC 2 cut(s) 271, 282
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 7, 169
Eco72I CACGTG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 2 cut(s) 169, 176
FaiI YATR 2 cut(s) 167, 174
FaqI GGGAC 4 cut(s) 20, 32, 53, 75
FatI CATG 2 cut(s) 165, 172
FauI CCCGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 301
Hin1II CATG 2 cut(s) 169, 176
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 301
HphI GGTGA 2 cut(s) 233, 260
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 33, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 33, 188
Hsp92II CATG 2 cut(s) 169, 176
Kzo9I GATC 2 cut(s) 271, 282
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 5 cut(s) 50, 81, 95, 290, 314
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 33, 188
MalI GATC 2 cut(s) 273, 284
MboI GATC 2 cut(s) 271, 282
MboII GAAGA 3 cut(s) 131, 188, 236
MluCI AATT 1 cut(s) 316
MnlI CCTC 9 cut(s) 46, 81, 109, 175, 186, 196, 226, 239, 257
MroXI GAANNNNTTC 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 271, 282
NlaIII CATG 2 cut(s) 169, 176
NlaIV GGNNCC 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 39
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 189
PmlI CACGTG 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 189
PspCI CACGTG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 7, 169
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 271, 282
Sau96I GGNCC 2 cut(s) 7, 169
SetI ASST 6 cut(s) 36, 148, 191, 231, 237, 250
SinI GGWCC 2 cut(s) 7, 169
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 56, 218
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 36, 191
TaqI TCGA 3 cut(s) 30, 78, 84
TaqII GACCGA 1 cut(s) 24
TasI AATT 1 cut(s) 316
TfiI GAWTC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 7, 169
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.