FvH4_3g26413

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019548
Physical Location & Seq
Reverse (-)
19464612 .. 19465746
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26413.t1

Sequence Viewer

Length: 1047 bp
ATGGATTCTACTCAAGTCCCTCTTGTTGAAATAGATTTAGGAGATGATATTTTAAATTATGCCAGTATCCTCAGTGGAAGCTCAGGGAATAATGAAAATATGTTTCCGAATTTTGGTAATCCTGCATCTGGTGATGGTATTAGCTATAGTCAGAGCCCTATTCAAAGTCAAGTTGGTGTTCAGAGTGAATCTCAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCTAGTCAAGAAGACATCCTTCTTGTCTCTGCCTGGCTCAATACTTCCCTTGATCCAATAATAGGAAATGATAAAAAAGGTGATGCATATTGGAAAAGAATTTGGGAGTATTTCTATGCTGAGAAGACCTTTGAACTAGAGTGTGATCGTAATAAGGGTTCTCTCATGAATCATTGGTCTGGAATTCAACTTGATGTTAACAAATTTTGTGGCATTTATGCTGAAGTTGAAAGGAAAAGAGCAAGTGGTACAACTGAACAAGATAAGATGCTAGAAGCCAAACAAAAGTTTAGGAAATTGCTAAAAAGAAACTTTGCATATGAGCATTATTGGAATCTGTTGAAGTTCCACCCAAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGACGATTCCTGCAACTCCATCTCCTATCACTCCATCTCTTGACACTCCATCTGCTAGCCCGGATACAGTCGATTTACCTGATGGTGATGGTCAAGGCAATGAGGCTCAAGGCTTGGTGAGGCCTATAGGAAAAAAGGCTGCCAAGACCTTGGCAAAGAATGCAAAAGCTATAGAGAAAGTCGGAGCAGCCCAGTCCGAATTAGGAGACTATTATGCTCTGAAAGTTGAACACGCTCGTAAGGAGGATGAGCAATTTCAACTAATGTATAATGTTGAACAAGAGAACATCAAGCTGAGGAAACAGGAACTTGAAATTCAAGTTCGAAAAGAGGACAATACAATAATGGCAATGGATACTTCTACAATGGAACTAGTTCGTGCAGAATATTTCAGAGGATCAACAAAAAATCATCACAAAAAGAGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

349

Amino Acids

39.35

Weight (kDa)

7.65

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 179 - 337 1.8e-19 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019548)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g16231 FvH4_3g26413 FvH4_5g21960
rosa_laevigata RLG00000024698
rosa_roxburghii Rroxscaffold_2G00090990
rosa_samantha Rh5AG464300 Rh5BG276700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 275, 1021
AcsI RAATTY 6 cut(s) 109, 223, 327, 411, 431, 930
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 3 cut(s) 113, 128, 290
AhlI ACTAGT 1 cut(s) 988
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 6 cut(s) 81, 144, 209, 785, 910, 1041
AluI AGCT 6 cut(s) 81, 144, 209, 785, 910, 1041
Alw26I GTCTC 2 cut(s) 259, 816
AlwI GGATC 2 cut(s) 275, 1021
AoxI GGCC 1 cut(s) 737
ApeKI GCWGC 3 cut(s) 755, 803, 1041
ApoI RAATTY 6 cut(s) 109, 223, 327, 411, 431, 930
Asp700I GAANNNNTTC 1 cut(s) 990
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 4 cut(s) 143, 320, 713, 745
AsuII TTCGAA 1 cut(s) 940
AsuNHI GCTAGC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 246, 359
BbvCI CCTCAGC 1 cut(s) 911
BbvI GCAGC 3 cut(s) 742, 815, 1028
BccI CCATC 6 cut(s) 128, 643, 658, 673, 692, 698
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 3 cut(s) 77, 673, 964
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 259, 816
BcuI ACTAGT 1 cut(s) 988
BfaI CTAG 6 cut(s) 231, 365, 500, 603, 672, 989
BfmI CTRYAG 3 cut(s) 145, 741, 786
BfuI GTATCC 3 cut(s) 77, 673, 964
BisI GCNGC 3 cut(s) 756, 804, 1042
BlsI GCNGC 3 cut(s) 757, 805, 1043
Bme1390I CCNGG 2 cut(s) 262, 677
BmrFI CCNGG 2 cut(s) 262, 677
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 3 cut(s) 134, 301, 486
BmtI GCTAGC 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 2 cut(s) 246, 359
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 2 cut(s) 82, 911
Bpu14I TTCGAA 1 cut(s) 940
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 765
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 128, 290
Bse1I ACTGG 2 cut(s) 63, 808
Bse3DI GCAATG 2 cut(s) 721, 972
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 2 cut(s) 243, 868
BseLI CCNNNNNNNGG 3 cut(s) 113, 128, 290
BseMI GCAATG 2 cut(s) 721, 972
BseMII CTCAG 4 cut(s) 85, 96, 339, 902
BseNI ACTGG 2 cut(s) 63, 808
BseXI GCAGC 3 cut(s) 742, 815, 1028
BsgI GTGCAG 1 cut(s) 1017
BshFI GGCC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 113, 128, 290
BsmAI GTCTC 2 cut(s) 259, 816
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 1 cut(s) 739
Bsp119I TTCGAA 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 280, 373, 1013
BspANI GGCC 1 cut(s) 739
BspCNI CTCAG 4 cut(s) 84, 95, 340, 903
BspHI TCATGA 1 cut(s) 393
BspOI GCTAGC 1 cut(s) 675
BspPI GGATC 2 cut(s) 275, 1021
BspT104I TTCGAA 1 cut(s) 940
BsrDI GCAATG 2 cut(s) 721, 972
BsrI ACTGG 2 cut(s) 63, 808
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 3 cut(s) 280, 373, 1013
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 4 cut(s) 71, 82, 348, 911
BstF5I GGATG 2 cut(s) 243, 868
BstKTI GATC 3 cut(s) 283, 376, 1016
BstMAI GTCTC 2 cut(s) 259, 816
BstMBI GATC 3 cut(s) 280, 373, 1013
BstMWI GCNNNNNNNGC 2 cut(s) 215, 776
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 260, 675
BstSFI CTRYAG 3 cut(s) 145, 741, 786
BstV1I GCAGC 3 cut(s) 742, 815, 1028
BstV2I GAAGAC 2 cut(s) 246, 359
BstXI CCANNNNNNTGG 1 cut(s) 766
BsuI GTATCC 3 cut(s) 77, 673, 964
BsuRI GGCC 1 cut(s) 739
BtsCI GGATG 2 cut(s) 243, 868
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 673
CciI TCATGA 1 cut(s) 393
Csp6I GTAC 1 cut(s) 477
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 4 cut(s) 71, 82, 348, 911
DpnI GATC 3 cut(s) 282, 375, 1015
DpnII GATC 3 cut(s) 280, 373, 1013
DraI TTTAAA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 765
Eco147I AGGCCT 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 765
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 1 cut(s) 397
FalI AAGNNNNNCTT 3 cut(s) 38, 231, 263
FaqI GGGAC 1 cut(s) 2
FatI CATG 1 cut(s) 393
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 756, 804, 1042
FokI GGATG 2 cut(s) 230, 875
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 756, 804, 1042
FspBI CTAG 6 cut(s) 231, 365, 500, 603, 672, 989
GluI GCNGC 3 cut(s) 756, 804, 1042
HaeIII GGCC 1 cut(s) 739
HapII CCGG 1 cut(s) 677
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 5, 188, 397, 562, 622
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 1 cut(s) 677
HphI GGTGA 4 cut(s) 143, 320, 713, 745
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 7 cut(s) 108, 153, 183, 800, 814, 837, 1010
Hpy188III TCNNGA 4 cut(s) 236, 394, 408, 656
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4V TGCA 6 cut(s) 125, 314, 545, 629, 779, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 776
HpyF3I CTNAG 4 cut(s) 71, 82, 348, 911
Hsp92II CATG 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 280, 373, 1013
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 3 cut(s) 742, 815, 1028
LweI GCATC 3 cut(s) 134, 301, 486
MaeI CTAG 6 cut(s) 231, 365, 500, 603, 672, 989
MalI GATC 3 cut(s) 282, 375, 1015
MboI GATC 3 cut(s) 280, 373, 1013
MboII GAAGA 2 cut(s) 251, 364
MhlI GDGCHC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 8 cut(s) 30, 80, 712, 729, 853, 906, 940, 1004
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 990
MseI TTAA 2 cut(s) 53, 426
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 262, 677
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 215, 776
NciI CCSGG 1 cut(s) 677
NdeI CATATG 1 cut(s) 547
NdeII GATC 3 cut(s) 280, 373, 1013
NheI GCTAGC 1 cut(s) 671
NlaIII CATG 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 316
NspV TTCGAA 1 cut(s) 940
PagI TCATGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 739
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 5 cut(s) 5, 188, 397, 562, 622
PkrI GCNGC 3 cut(s) 757, 805, 1043
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 53, 426
SatI GCNGC 3 cut(s) 756, 804, 1042
Sau3AI GATC 3 cut(s) 280, 373, 1013
ScrFI CCNGG 2 cut(s) 262, 677
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 134, 301, 486
SfcI CTRYAG 3 cut(s) 145, 741, 786
SfuI TTCGAA 1 cut(s) 940
SmlI CTYRAG 2 cut(s) 12, 723
SmoI CTYRAG 2 cut(s) 12, 723
SpeI ACTAGT 1 cut(s) 988
SseBI AGGCCT 1 cut(s) 739
SspI AATATT 1 cut(s) 1004
SspMI CTAG 6 cut(s) 231, 365, 500, 603, 672, 989
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 260, 675
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 685
TaqI TCGA 2 cut(s) 687, 940
TfiI GAWTC 5 cut(s) 5, 188, 397, 562, 622
Tru1I TTAA 2 cut(s) 53, 426
Tru9I TTAA 2 cut(s) 53, 426
TscAI CASTG 1 cut(s) 79
TseI GCWGC 3 cut(s) 755, 803, 1041
TspDTI ATGAA 2 cut(s) 108, 410
TspRI CASTG 1 cut(s) 79
XapI RAATTY 6 cut(s) 109, 223, 327, 411, 431, 930
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 6 cut(s) 231, 365, 500, 603, 672, 989
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.