FvH4_5g21960

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019548
Physical Location & Seq
Forward (+)
13331976 .. 13333561
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21960.t1

Sequence Viewer

Length: 912 bp
ATGAACCTCAAAACCCAAAACGACTCCAGTAAGAACCCTAAATCGAATAATAGTGAATTAAAGGGCTTACCAACAGTCGTGAAACATGAGGGTTGGCTGGTTTGGAAAGACCGATGCCCACAAACGCGTCAGAGGGAGAGATATGTTGTGTCTGCCGAAGAGAGATCGGAGATGGAGATGGAGATGGAGAGAGACAGGATTTGGGCAAGAATGAAGATGGATTCTACTCAAGTCCCTCTTGTTGAAATAGATTTAGGAGATGATATTTTAAATTATGCCAGTATCCTCAGTGGAAGCTCAGGGAATAATGAAAATATGTTTCCGAATTTGGGTTATCTTGCATCTGGTGATGGTATTAGCTATAGTCAGAGCCCTATTCAAAATCAAGTTGGTGTTCAGAGTGAATCTCAAACCACAAAGAAAGCTAAAAGAGTCAAGAATTTCTCCAGTCAAGAAGACATCCTTCTTGTCTCTGCCTGGCTCAATACTTCCCTTGATCCAATAATAGGAAATGATCAAAAAGTCGATTTAGCTGATGGTGATGGTCGCAATGAGTCTCAAGGCTTGGTGAGGCCTATAGGAAAAAAGGCTGCCAAGACCTTGGCAAAGAATGCAAAAGCTAAAGAGAAAGTCGGAGCAACCCAGTCCGAATTAGGAGACTATTATGCTCTGAAAGTTGAACACGCTCGTAAGGAGGATGAGCAATTTCAACTAATGTATAATGCTAAACAAGAGAACATCAAGCTGAGGAAACAGGAACTTGAAATTCAAGTTCGAAAAGAGGACAATACAATAATGGCAATGAATACTTCTACAATGGAACTAGTTCGTGCAGAATATTTTAGATCATTTCAACAAAAAATCATCGCAAAAAGAGCTGCTGATGGGAACCAAATGTCAGTTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

304

Amino Acids

34.37

Weight (kDa)

7.69

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 177 - 288 7.7e-07 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019548)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g16231 FvH4_3g26413 FvH4_5g21960
rosa_laevigata RLG00000024698
rosa_roxburghii Rroxscaffold_2G00090990
rosa_samantha Rh5AG464300 Rh5BG276700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 127
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 3 cut(s) 325, 439, 765
AfiI CCNNNNNNNGG 2 cut(s) 329, 506
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 7 cut(s) 245, 380, 680, 710, 764, 770, 854
AhlI ACTAGT 1 cut(s) 823
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 7 cut(s) 297, 360, 425, 533, 620, 745, 878
AluI AGCT 7 cut(s) 297, 360, 425, 533, 620, 745, 878
Alw26I GTCTC 4 cut(s) 186, 475, 561, 651
AlwI GGATC 1 cut(s) 491
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 590, 878
ApoI RAATTY 3 cut(s) 325, 439, 765
Asp700I GAANNNNTTC 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 359, 551, 580
AsuII TTCGAA 1 cut(s) 775
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 577, 865
BccI CCATC 8 cut(s) 166, 172, 178, 211, 344, 530, 536, 878
BciT130I CCWGG 1 cut(s) 478
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 4 cut(s) 186, 475, 561, 651
BcuI ACTAGT 1 cut(s) 823
BfaI CTAG 1 cut(s) 824
BfmI CTRYAG 2 cut(s) 361, 576
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 2 cut(s) 591, 879
BlsI GCNGC 2 cut(s) 592, 880
Bme1390I CCNGG 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 1 cut(s) 478
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 2 cut(s) 104, 350
BmuI ACTGGG 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 2 cut(s) 10, 430
Bpu10I CCTNAGC 2 cut(s) 298, 746
Bpu14I TTCGAA 1 cut(s) 775
BpuEI CTTGAG 2 cut(s) 213, 543
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 506
Bse1I ACTGG 4 cut(s) 27, 279, 447, 643
Bse3DI GCAATG 2 cut(s) 556, 807
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 2 cut(s) 459, 703
BseLI CCNNNNNNNGG 2 cut(s) 329, 506
BseMI GCAATG 2 cut(s) 556, 807
BseMII CTCAG 3 cut(s) 301, 312, 737
BseNI ACTGG 4 cut(s) 27, 279, 447, 643
BseXI GCAGC 2 cut(s) 577, 865
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 574
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 329, 506
BsmAI GTCTC 4 cut(s) 186, 475, 561, 651
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 574
Bsp119I TTCGAA 1 cut(s) 775
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 4 cut(s) 164, 496, 514, 845
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 3 cut(s) 300, 311, 738
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 890
BspPI GGATC 1 cut(s) 491
BspT104I TTCGAA 1 cut(s) 775
BsrDI GCAATG 2 cut(s) 556, 807
BsrI ACTGG 4 cut(s) 27, 279, 447, 643
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 4 cut(s) 164, 496, 514, 845
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 478
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 775
BstDEI CTNAG 3 cut(s) 287, 298, 746
BstF5I GGATG 2 cut(s) 459, 703
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 4 cut(s) 167, 499, 517, 848
BstMAI GTCTC 4 cut(s) 186, 475, 561, 651
BstMBI GATC 4 cut(s) 164, 496, 514, 845
BstMWI GCNNNNNNNGC 2 cut(s) 611, 875
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 476
BstSFI CTRYAG 2 cut(s) 361, 576
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 577, 865
BstV2I GAAGAC 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 601
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 2 cut(s) 459, 703
BtsIMutI CAGTG 1 cut(s) 295
CseI GACGC 1 cut(s) 116
CviAII CATG 1 cut(s) 86
DdeI CTNAG 3 cut(s) 287, 298, 746
DpnI GATC 4 cut(s) 166, 498, 516, 847
DpnII GATC 4 cut(s) 164, 496, 514, 845
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 1 cut(s) 89
FaiI YATR 8 cut(s) 87, 144, 276, 317, 363, 578, 666, 720
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 447, 479
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 591, 879
FokI GGATG 2 cut(s) 446, 710
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 591, 879
FspBI CTAG 1 cut(s) 824
GluI GCNGC 2 cut(s) 591, 879
GsuI CTGGAG 2 cut(s) 10, 430
HaeIII GGCC 1 cut(s) 574
HgaI GACGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 89
HinfI GANTC 5 cut(s) 23, 221, 404, 432, 554
HphI GGTGA 3 cut(s) 359, 551, 580
Hpy188I TCNGA 8 cut(s) 132, 169, 324, 369, 399, 635, 649, 672
Hpy188III TCNNGA 3 cut(s) 79, 436, 452
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 341, 614, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 875
HpyF3I CTNAG 3 cut(s) 287, 298, 746
Hsp92II CATG 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 164, 496, 514, 845
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 2 cut(s) 577, 865
LweI GCATC 2 cut(s) 104, 350
MaeI CTAG 1 cut(s) 824
MalI GATC 4 cut(s) 166, 498, 516, 847
MboI GATC 4 cut(s) 164, 496, 514, 845
MboII GAAGA 3 cut(s) 170, 226, 467
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 7 cut(s) 56, 271, 325, 439, 650, 704, 765
MluI ACGCGT 1 cut(s) 125
MlyI GAGTC 3 cut(s) 17, 441, 563
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 17, 82, 126, 246, 296, 564, 688, 741, 775
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 2 cut(s) 59, 269
MspR9I CCNGG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 611, 875
NdeII GATC 4 cut(s) 164, 496, 514, 845
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 890
NspV TTCGAA 1 cut(s) 775
PceI AGGCCT 1 cut(s) 574
PctI GAATGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 2 cut(s) 221, 404
PkrI GCNGC 2 cut(s) 592, 880
PleI GAGTC 3 cut(s) 17, 440, 562
PpsI GAGTC 3 cut(s) 17, 440, 562
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 890
SaqAI TTAA 2 cut(s) 59, 269
SatI GCNGC 2 cut(s) 591, 879
Sau3AI GATC 4 cut(s) 164, 496, 514, 845
SchI GAGTC 3 cut(s) 17, 441, 563
ScrFI CCNGG 1 cut(s) 478
SduI GDGCHC 1 cut(s) 374
SetI ASST 9 cut(s) 9, 299, 362, 427, 535, 602, 622, 747, 880
SfaNI GCATC 2 cut(s) 104, 350
SfcI CTRYAG 2 cut(s) 361, 576
SfuI TTCGAA 1 cut(s) 775
SmlI CTYRAG 2 cut(s) 228, 558
SmoI CTYRAG 2 cut(s) 228, 558
SpeI ACTAGT 1 cut(s) 823
Sse9I AATT 7 cut(s) 56, 271, 325, 439, 650, 704, 765
SseBI AGGCCT 1 cut(s) 574
SspI AATATT 1 cut(s) 839
SspMI CTAG 1 cut(s) 824
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 44, 525, 775
TaqII GACCGA 1 cut(s) 126
TasI AATT 7 cut(s) 56, 271, 325, 439, 650, 704, 765
TfiI GAWTC 2 cut(s) 221, 404
Tru1I TTAA 2 cut(s) 59, 269
Tru9I TTAA 2 cut(s) 59, 269
TscAI CASTG 1 cut(s) 295
TseI GCWGC 2 cut(s) 590, 878
TspDTI ATGAA 4 cut(s) 17, 227, 324, 818
TspRI CASTG 1 cut(s) 295
XapI RAATTY 3 cut(s) 325, 439, 765
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.