FvH4_3g29720

Caspase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016675
Physical Location & Seq
Reverse (-)
22775526 .. 22776947
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29720.t1

Sequence Viewer

Length: 972 bp
ATGGAGAAGCAAAACAAGAGGTTGGCTGTTTTGGTAGGCTGCAACTACCCCAACACCCGGAACGAGCTCCATGGTTGCATAAATGATGTACTCACCATGCGCGACACGCTGGTGAGTCGGTTTGGGTTTGATCCTAACCACATTGAGCTACTGACTGATGATGGATCTGCATCAGTCTTGCCAACAGGTGCAAACATTAAGAAGGCACTTGATGCAATGGTTGACCAGGCTGAACCAGGGGATGTGCTCTACTTTCACTACAGTGGACATGGAACAAGGATTCCATCATTGAAACCAGGCAGGCCTTTCAGGCAGGATGAGGCAATTGTGCCTTGTGATTTCAATCTCATCACCGATGTGGATTTCAGACAATTAGTAAACCGCTTACCAAAGGGAGCAAGCTTTACAATACTGTCGGATTCATGCCACAGTGGAGGCCTCATTGACAAAGAGAAAGAGCAGATTGGACCTTCTCATGTCACATCTGAAATTAGTGACACGTTATCCGGTTCCTGTAATAAGACCAAGGCAATTCCTTTCGAGTCCATATTGGAGCACCTCACCTCATTAACTGGCATAAGCACATCTGACATTGCAACTCACTTTCTAGAGTTGTTTGCAGCCGACGCCAGCCTCAAGTTTCGCTTACCTCTACTCGATCTCAACTTCTTCGAGTCGTTGAAGCCGGATGAGGGGATTCTTCTGAGTGGGTGTCAAGCCAATGAGACATCAGCCGACATGATGAACCCGGTTATGACCGGTGGAAAGGCATGTGGAGCATTCAGCAATGCTATTGAAATGGTTTTGAGGAAGCATGAGGCTCCGCTAAGCAATAGAGAGGTCGTGATGCTAGCTAGAGTATTTCTTCAGGAACAAGGCATTGAGCAGCATCCTTGTCTCTATTGCAATGATGAGAATGCCAATGCTACTTTCTTGTATCAACCAGCTGCTCACCAGAACTCGAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0048046 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14

Protein Analysis

324

Amino Acids

35.39

Weight (kDa)

5.19

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 6 - 303 1.2e-35 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016675)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04200
fragaria_vesca FvH4_3g29720
malus_domestica MD03G1136900.v1.1
prunus_persica Prupe.6G122000_v2.0.a1
pyrus_communis pycom03g09280
rosa_chinensis RchiOBHm_Chr5g0055101
rosa_laevigata RLG00000034964
rosa_multiflora Rmu_sc0001694.1_g000018
rosa_roxburghii Rroxscaffold_1G00025350
rosa_samantha Rh5AG360800 Rh5BG371900 Rh5CG394000 Rh5DG385600
rosa_wichuraiana Rw5G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 382, 824
AclWI GGATC 2 cut(s) 125, 172
AcuI CTGAAG 1 cut(s) 851
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 57, 692
AflIII ACRYGT 1 cut(s) 498
AgeI ACCGGT 1 cut(s) 758
AgsI TTSAA 4 cut(s) 292, 343, 682, 797
AjnI CCWGG 3 cut(s) 225, 235, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 914, 946
AleI CACNNNNGTG 3 cut(s) 110, 261, 356
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 5 cut(s) 67, 148, 402, 854, 947
AluI AGCT 5 cut(s) 67, 148, 402, 854, 947
Alw21I GWGCWC 3 cut(s) 69, 249, 558
Alw26I GTCTC 2 cut(s) 719, 902
AlwI GGATC 2 cut(s) 125, 172
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 2 cut(s) 302, 436
ApeKI GCWGC 4 cut(s) 39, 620, 886, 947
AsiGI ACCGGT 1 cut(s) 758
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 2 cut(s) 58, 749
AsuHPI GGTGA 5 cut(s) 85, 124, 343, 553, 944
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 1 cut(s) 961
AvaII GGWCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 3 cut(s) 69, 249, 558
BbvI GCAGC 4 cut(s) 26, 632, 898, 934
BccI CCATC 2 cut(s) 155, 292
BciT130I CCWGG 3 cut(s) 227, 237, 297
BcnI CCSGG 2 cut(s) 58, 749
BcoDI GTCTC 2 cut(s) 719, 902
BfaI CTAG 3 cut(s) 608, 851, 855
BfmI CTRYAG 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 4 cut(s) 40, 621, 887, 948
BlpI GCTNAGC 1 cut(s) 827
BlsI GCNGC 4 cut(s) 41, 622, 888, 949
Bme1390I CCNGG 5 cut(s) 58, 227, 237, 297, 749
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 511, 822
BmrFI CCNGG 5 cut(s) 58, 227, 237, 297, 749
BmsI GCATC 4 cut(s) 179, 202, 837, 898
BmtI GCTAGC 1 cut(s) 854
Bpu1102I GCTNAGC 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 2 cut(s) 58, 749
BsaBI GATNNNNATC 2 cut(s) 169, 342
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 3 cut(s) 70, 236, 525
BsaWI WCCGGW 2 cut(s) 506, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 692
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 4 cut(s) 222, 591, 793, 913
Bse8I GATNNNNATC 2 cut(s) 169, 342
BseBI CCWGG 3 cut(s) 227, 237, 297
BseDI CCNNGG 3 cut(s) 70, 236, 525
BseGI GGATG 4 cut(s) 247, 322, 694, 889
BseJI GATNNNNATC 2 cut(s) 169, 342
BseLI CCNNNNNNNGG 2 cut(s) 57, 692
BseMI GCAATG 4 cut(s) 222, 591, 793, 913
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 4 cut(s) 26, 632, 898, 934
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 304, 438
BshTI ACCGGT 1 cut(s) 758
BsiHKAI GWGCWC 3 cut(s) 69, 249, 558
BsiHKCI CYCGRG 1 cut(s) 961
BsiSI CCGG 5 cut(s) 58, 507, 686, 749, 759
BslI CCNNNNNNNGG 2 cut(s) 57, 692
BsmAI GTCTC 2 cut(s) 719, 902
BsmI GAATGC 2 cut(s) 779, 922
BsnI GGCC 2 cut(s) 304, 438
BsoBI CYCGRG 1 cut(s) 961
Bsp1286I GDGCHC 3 cut(s) 69, 249, 558
Bsp143I GATC 3 cut(s) 130, 164, 658
Bsp1720I GCTNAGC 1 cut(s) 827
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 382, 824
BspANI GGCC 2 cut(s) 304, 438
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 511, 822
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 2 cut(s) 125, 172
BsrDI GCAATG 4 cut(s) 222, 591, 793, 913
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 3 cut(s) 70, 236, 525
BssMI GATC 3 cut(s) 130, 164, 658
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 70, 525
Bst2UI CCWGG 3 cut(s) 227, 237, 297
Bst4CI ACNGT 3 cut(s) 263, 414, 431
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 4 cut(s) 302, 400, 631, 852
BstDEI CTNAG 2 cut(s) 704, 827
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 4 cut(s) 247, 322, 694, 889
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 133, 167, 661
BstMAI GTCTC 2 cut(s) 719, 902
BstMBI GATC 3 cut(s) 130, 164, 658
BstMWI GCNNNNNNNGC 5 cut(s) 106, 212, 310, 626, 776
BstNI CCWGG 3 cut(s) 227, 237, 297
BstNSI RCATGY 1 cut(s) 774
BstSCI CCNGG 5 cut(s) 56, 225, 235, 295, 747
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 4 cut(s) 26, 632, 898, 934
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 2 cut(s) 304, 438
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 247, 322, 694, 889
BtsIMutI CAGTG 2 cut(s) 268, 436
Cac8I GCNNGC 4 cut(s) 302, 400, 631, 852
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 758
CviAII CATG 8 cut(s) 71, 97, 269, 423, 476, 739, 771, 815
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 704, 827
DpnI GATC 3 cut(s) 132, 166, 660
DpnII GATC 3 cut(s) 130, 164, 658
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 70, 525
Eco147I AGGCCT 2 cut(s) 304, 438
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 961
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 225, 235, 295
EcoT14I CCWWGG 2 cut(s) 70, 525
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 70, 525
FaeI CATG 8 cut(s) 74, 100, 272, 426, 479, 742, 774, 818
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 8 cut(s) 70, 96, 268, 422, 475, 738, 770, 814
Fnu4HI GCNGC 4 cut(s) 40, 621, 887, 948
FokI GGATG 4 cut(s) 254, 329, 701, 876
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 40, 621, 887, 948
FspBI CTAG 3 cut(s) 608, 851, 855
GlaI GCGC 1 cut(s) 101
GluI GCNGC 4 cut(s) 40, 621, 887, 948
HaeIII GGCC 2 cut(s) 304, 438
HapII CCGG 5 cut(s) 58, 507, 686, 749, 759
HgaI GACGC 1 cut(s) 635
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 8 cut(s) 74, 100, 272, 426, 479, 742, 774, 818
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 6 cut(s) 115, 280, 419, 542, 674, 697
HpaII CCGG 5 cut(s) 58, 507, 686, 749, 759
HphI GGTGA 5 cut(s) 85, 124, 343, 553, 944
Hpy166II GTNNAC 3 cut(s) 223, 266, 379
Hpy188I TCNGA 5 cut(s) 368, 418, 487, 589, 705
Hpy188III TCNNGA 3 cut(s) 608, 844, 869
Hpy8I GTNNAC 3 cut(s) 223, 266, 379
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 2 cut(s) 196, 480
HpyCH4III ACNGT 3 cut(s) 263, 414, 431
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 8 cut(s) 42, 78, 170, 191, 215, 596, 620, 906
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 212, 310, 626, 776
HpyF3I CTNAG 2 cut(s) 704, 827
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 8 cut(s) 74, 100, 272, 426, 479, 742, 774, 818
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 130, 164, 658
LmnI GCTCC 5 cut(s) 72, 395, 553, 776, 826
Lsp1109I GCAGC 4 cut(s) 26, 632, 898, 934
LweI GCATC 4 cut(s) 179, 202, 837, 898
MaeI CTAG 3 cut(s) 608, 851, 855
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 2 cut(s) 478, 494
MalI GATC 3 cut(s) 132, 166, 660
MboI GATC 3 cut(s) 130, 164, 658
MboII GAAGA 3 cut(s) 661, 692, 857
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 3 cut(s) 69, 249, 558
MluCI AATT 4 cut(s) 324, 371, 489, 531
MlyI GAGTC 3 cut(s) 124, 551, 683
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 2 cut(s) 198, 569
MslI CAYNNNNRTG 3 cut(s) 110, 261, 356
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 5 cut(s) 58, 507, 686, 749, 759
MspR9I CCNGG 5 cut(s) 58, 227, 237, 297, 749
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 779, 922
MvaI CCWGG 3 cut(s) 227, 237, 297
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 5 cut(s) 106, 212, 310, 626, 776
NciI CCSGG 2 cut(s) 58, 749
NcoI CCATGG 1 cut(s) 70
NdeII GATC 3 cut(s) 130, 164, 658
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 8 cut(s) 74, 100, 272, 426, 479, 742, 774, 818
NlaIV GGNNCC 2 cut(s) 511, 822
NmuCI GTSAC 2 cut(s) 478, 494
NspI RCATGY 1 cut(s) 774
OliI CACNNNNGTG 3 cut(s) 110, 261, 356
PaeR7I CTCGAG 1 cut(s) 961
PceI AGGCCT 2 cut(s) 304, 438
PctI GAATGC 2 cut(s) 779, 922
PfeI GAWTC 3 cut(s) 280, 419, 697
PinAI ACCGGT 1 cut(s) 758
PkrI GCNGC 4 cut(s) 41, 622, 888, 949
PleI GAGTC 3 cut(s) 123, 550, 682
PpsI GAGTC 3 cut(s) 123, 550, 682
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 225, 235, 295
PspGI CCWGG 3 cut(s) 225, 235, 295
PspN4I GGNNCC 2 cut(s) 511, 822
PspPI GGNCC 1 cut(s) 467
PspXI VCTCGAGB 1 cut(s) 961
PsuI RGATCY 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 3 cut(s) 110, 261, 356
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 198, 569
SatI GCNGC 4 cut(s) 40, 621, 887, 948
Sau3AI GATC 3 cut(s) 130, 164, 658
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 3 cut(s) 124, 551, 683
ScrFI CCNGG 5 cut(s) 58, 227, 237, 297, 749
SduI GDGCHC 3 cut(s) 69, 249, 558
SfaNI GCATC 4 cut(s) 179, 202, 837, 898
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 961
SinI GGWCC 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 961
SmiMI CAYNNNNRTG 3 cut(s) 110, 261, 356
SmlI CTYRAG 2 cut(s) 635, 961
SmoI CTYRAG 2 cut(s) 635, 961
Sse9I AATT 4 cut(s) 324, 371, 489, 531
SseBI AGGCCT 2 cut(s) 304, 438
SsiI CCGC 2 cut(s) 382, 824
SspMI CTAG 3 cut(s) 608, 851, 855
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 2 cut(s) 304, 438
StyD4I CCNGG 5 cut(s) 56, 225, 235, 295, 747
StyI CCWWGG 2 cut(s) 70, 525
TaaI ACNGT 3 cut(s) 263, 414, 431
TaiI ACGT 1 cut(s) 503
TaqI TCGA 4 cut(s) 540, 657, 672, 962
TasI AATT 4 cut(s) 324, 371, 489, 531
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 3 cut(s) 280, 419, 697
Tru1I TTAA 2 cut(s) 198, 569
Tru9I TTAA 2 cut(s) 198, 569
TscAI CASTG 2 cut(s) 268, 436
TseFI GTSAC 2 cut(s) 478, 494
TseI GCWGC 4 cut(s) 39, 620, 886, 947
Tsp45I GTSAC 2 cut(s) 478, 494
TspDTI ATGAA 3 cut(s) 411, 758, 957
TspRI CASTG 2 cut(s) 268, 436
VpaK11BI GGWCC 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 1 cut(s) 774
XhoI CTCGAG 1 cut(s) 961
XspI CTAG 3 cut(s) 608, 851, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.