Prupe.6G122000_v2.0.a1

Caspase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016675
Physical Location & Seq
Forward (+)
9083039 .. 9085430
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G122000.1

Sequence Viewer

Length: 1068 bp
ATGGACACAAAAACTTGTAAATTGGGTGACAAAATTAATTTATTGGTCTACAAATTACACTCAGATTATTGCCTGCAAATTATAATTATGGAGAATGAAAACAAGAAGAGGTTGGCAGTTTTGGTGGGCTGCAATTACCCAAACACCAGAAATGAGCTGCATGGTTGCATAAATGATGTGGTGGCCATGAGAGGCACACTTGTGAATCGCTTCGGGTTTGATCCAGGAAACATTCAGCTGCTGACTGATGCTGCAGCTGCAGGTTCTTCTTCCTCAGTCATGCCCACAGGTGCAAATATTAAGAAGGCACTTGGTGCAATGGTTGATCAAGCTAAGCCAGGTGATGTCTTGTATTTTCACTATAGTGGCCATGGAACAAGGATCCCTTCATTGAAGCCAGGCAACCCCTTCAGGCAGGATGAGGCTATTGTGCCTTGTGATTTCAATCTCATCACTGATGTGGATTTCAGACAACTAGTAAACCGCTTGCCAAAGGGAGCAAGCTTTACAATCCTGTCAGACTCATGCCACAGTGGAGGGCTCATTGACAAGGAGAAAGAGCAGATTGGACCTTCTCATGTCACTGAAATTAGTAACACATCCCCATCAGTTTCCTCTAAGCCTAAGGGCATTCCTTTTGAGTCCATATTACACCACCTCGCATCATTGACAGGCATAAACACATCTGACATTGCAACCCACTTGTTAGAGTTGTTTGCAGCAGATGCCAGCCTCAAGTTTCGTTTGCCTCCGTTCGAACTACTCAACATGTTCGAGTCATTGAACCCTGATGAGGGAATCTTACTAAGCGGGTGTCAAGCAAATGAGACTTCTGCTGACATGACGAACCCGGTCATGACTAGAGGAAAGGCATGTGGTGCTTTCAGCAATGCAGTTCAAATGCTGTTGAAGGAGCATGAGGCTGACCTAAGCAATCGACAAGTTGTGATGCTTGCTAGACAAGTTTTGAGAGAACAAGGCTTTGAGCAGCACCCTTGTCTCTATTGCAATGATGAGAATGCTGATGCAACTTTCTTATGCGAATCTCATATCAGCTCAAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0048046 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14

Protein Analysis

356

Amino Acids

38.74

Weight (kDa)

5.73

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016675)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04200
fragaria_vesca FvH4_3g29720
malus_domestica MD03G1136900.v1.1
prunus_persica Prupe.6G122000_v2.0.a1
pyrus_communis pycom03g09280
rosa_chinensis RchiOBHm_Chr5g0055101
rosa_laevigata RLG00000034964
rosa_multiflora Rmu_sc0001694.1_g000018
rosa_roxburghii Rroxscaffold_1G00025350
rosa_samantha Rh5AG360800 Rh5BG371900 Rh5CG394000 Rh5DG385600
rosa_wichuraiana Rw5G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 484, 810
AclWI GGATC 3 cut(s) 215, 376, 389
AcoI YGGCCR 2 cut(s) 183, 367
AcuI CTGAAG 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 793, 794
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 5 cut(s) 394, 445, 784, 899, 910
AhlI ACTAGT 1 cut(s) 475
AjnI CCWGG 3 cut(s) 223, 337, 397
AleI CACNNNNGTG 3 cut(s) 200, 363, 458
AluBI AGCT 6 cut(s) 157, 238, 257, 332, 504, 1056
AluI AGCT 6 cut(s) 157, 238, 257, 332, 504, 1056
Alw26I GTCTC 2 cut(s) 821, 1004
AlwI GGATC 3 cut(s) 215, 376, 389
AlwNI CAGNNNCTG 1 cut(s) 241
AoxI GGCC 2 cut(s) 183, 367
ApeKI GCWGC 8 cut(s) 129, 157, 238, 251, 254, 257, 719, 988
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 38, 353
AsuII TTCGAA 1 cut(s) 756
AvaII GGWCC 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 624
BalI TGGCCA 2 cut(s) 185, 369
BamHI GGATCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 543
BbvI GCAGC 8 cut(s) 116, 144, 225, 238, 244, 266, 731, 1000
BccI CCATC 1 cut(s) 613
BciT130I CCWGG 3 cut(s) 225, 339, 399
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 2 cut(s) 821, 1004
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 3 cut(s) 476, 861, 957
BfmI CTRYAG 3 cut(s) 252, 258, 361
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 8 cut(s) 130, 158, 239, 252, 255, 258, 720, 989
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 8 cut(s) 131, 159, 240, 253, 256, 259, 721, 990
Bme1390I CCNGG 4 cut(s) 225, 339, 399, 851
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 4 cut(s) 225, 339, 399, 851
BmsI GCATC 5 cut(s) 238, 671, 715, 939, 1015
Bpu10I CCTNAGC 1 cut(s) 929
Bpu1102I GCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 719, 1042
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 2 cut(s) 793, 794
Bse21I CCTNAGG 1 cut(s) 624
Bse3DI GCAATG 4 cut(s) 324, 690, 895, 1015
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 3 cut(s) 225, 339, 399
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 424, 599
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 793, 794
BseMI GCAATG 4 cut(s) 324, 690, 895, 1015
BseMII CTCAG 2 cut(s) 75, 288
BseXI GCAGC 8 cut(s) 116, 144, 225, 238, 244, 266, 731, 1000
BshFI GGCC 2 cut(s) 185, 369
BsiSI CCGG 1 cut(s) 851
BslI CCNNNNNNNGG 2 cut(s) 793, 794
BsmAI GTCTC 2 cut(s) 821, 1004
BsmI GAATGC 2 cut(s) 630, 1024
BsnI GGCC 2 cut(s) 185, 369
Bsp119I TTCGAA 1 cut(s) 756
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 3 cut(s) 220, 325, 381
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 2 cut(s) 484, 810
BspANI GGCC 2 cut(s) 185, 369
BspCNI CTCAG 2 cut(s) 74, 287
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 2 cut(s) 256, 262
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 3 cut(s) 215, 376, 389
BspT104I TTCGAA 1 cut(s) 756
BsrDI GCAATG 4 cut(s) 324, 690, 895, 1015
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 220, 325, 381
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 225, 339, 399
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 3 cut(s) 314, 725, 878
BstBI TTCGAA 1 cut(s) 756
BstC8I GCNNGC 5 cut(s) 74, 488, 502, 730, 954
BstDEI CTNAG 7 cut(s) 61, 274, 333, 618, 624, 806, 929
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 424, 599
BstKTI GATC 3 cut(s) 223, 328, 384
BstMAI GTCTC 2 cut(s) 821, 1004
BstMBI GATC 3 cut(s) 220, 325, 381
BstMWI GCNNNNNNNGC 4 cut(s) 257, 314, 725, 878
BstNI CCWGG 3 cut(s) 225, 339, 399
BstNSI RCATGY 2 cut(s) 772, 876
BstSCI CCNGG 4 cut(s) 223, 337, 397, 849
BstSFI CTRYAG 3 cut(s) 252, 258, 361
BstV1I GCAGC 8 cut(s) 116, 144, 225, 238, 244, 266, 731, 1000
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 2 cut(s) 185, 369
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 2 cut(s) 424, 599
BtsIMutI CAGTG 3 cut(s) 453, 538, 582
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 5 cut(s) 74, 488, 502, 730, 954
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 855
Cfr13I GGNCC 1 cut(s) 569
DdeI CTNAG 7 cut(s) 61, 274, 333, 618, 624, 806, 929
DpnI GATC 3 cut(s) 222, 327, 383
DpnII GATC 3 cut(s) 220, 325, 381
DraIII CACNNNGTG 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 183, 367
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 394
Eco81I CCTNAGG 1 cut(s) 624
EcoRII CCWGG 3 cut(s) 223, 337, 397
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 370
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FauI CCCGC 1 cut(s) 803
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 8 cut(s) 130, 158, 239, 252, 255, 258, 720, 989
FokI GGATG 2 cut(s) 431, 586
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 8 cut(s) 130, 158, 239, 252, 255, 258, 720, 989
FspBI CTAG 3 cut(s) 476, 861, 957
GluI GCNGC 8 cut(s) 130, 158, 239, 252, 255, 258, 720, 989
HaeIII GGCC 2 cut(s) 185, 369
HapII CCGG 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 6 cut(s) 205, 521, 641, 776, 798, 1043
HpaII CCGG 1 cut(s) 851
HphI GGTGA 2 cut(s) 38, 353
Hpy166II GTNNAC 2 cut(s) 49, 481
Hpy188I TCNGA 4 cut(s) 64, 470, 520, 688
Hpy188III TCNNGA 1 cut(s) 856
Hpy8I GTNNAC 2 cut(s) 49, 481
HpyAV CCTTC 5 cut(s) 298, 396, 418, 582, 904
HpyCH4III ACNGT 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 314, 725, 878
HpyF3I CTNAG 7 cut(s) 61, 274, 333, 618, 624, 806, 929
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 220, 325, 381
LmnI GCTCC 2 cut(s) 497, 913
Lsp1109I GCAGC 8 cut(s) 116, 144, 225, 238, 244, 266, 731, 1000
LweI GCATC 5 cut(s) 238, 671, 715, 939, 1015
MaeI CTAG 3 cut(s) 476, 861, 957
MaeIII GTNAC 3 cut(s) 26, 580, 593
MalI GATC 3 cut(s) 222, 327, 383
MboI GATC 3 cut(s) 220, 325, 381
MboII GAAGA 3 cut(s) 118, 258, 261
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 543
MlsI TGGCCA 2 cut(s) 185, 369
MluCI AATT 8 cut(s) 20, 33, 37, 53, 78, 84, 133, 588
MluNI TGGCCA 2 cut(s) 185, 369
MlyI GAGTC 3 cut(s) 515, 650, 785
Mox20I TGGCCA 2 cut(s) 185, 369
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 2 cut(s) 185, 369
MseI TTAA 2 cut(s) 36, 300
MslI CAYNNNNRTG 3 cut(s) 200, 363, 458
Msp20I TGGCCA 2 cut(s) 185, 369
MspA1I CMGCKG 2 cut(s) 238, 257
MspI CCGG 1 cut(s) 851
MspR9I CCNGG 4 cut(s) 225, 339, 399, 851
Mva1269I GAATGC 2 cut(s) 630, 1024
MvaI CCWGG 3 cut(s) 225, 339, 399
MwoI GCNNNNNNNGC 4 cut(s) 257, 314, 725, 878
NciI CCSGG 1 cut(s) 851
NcoI CCATGG 1 cut(s) 370
NdeII GATC 3 cut(s) 220, 325, 381
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 2 cut(s) 26, 580
NspI RCATGY 2 cut(s) 772, 876
NspV TTCGAA 1 cut(s) 756
OliI CACNNNNGTG 3 cut(s) 200, 363, 458
PagI TCATGA 1 cut(s) 855
PciI ACATGT 1 cut(s) 768
PctI GAATGC 2 cut(s) 630, 1024
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 205, 798, 1043
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 8 cut(s) 131, 159, 240, 253, 256, 259, 721, 990
PleI GAGTC 3 cut(s) 515, 649, 784
PpsI GAGTC 3 cut(s) 515, 649, 784
PscI ACATGT 1 cut(s) 768
PshBI ATTAAT 1 cut(s) 36
PsiI TTATAA 1 cut(s) 83
Psp6I CCWGG 3 cut(s) 223, 337, 397
PspGI CCWGG 3 cut(s) 223, 337, 397
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 2 cut(s) 256, 262
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 2 cut(s) 238, 257
RseI CAYNNNNRTG 3 cut(s) 200, 363, 458
SaqAI TTAA 2 cut(s) 36, 300
SatI GCNGC 8 cut(s) 130, 158, 239, 252, 255, 258, 720, 989
Sau3AI GATC 3 cut(s) 220, 325, 381
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 3 cut(s) 515, 650, 785
ScrFI CCNGG 4 cut(s) 225, 339, 399, 851
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 5 cut(s) 238, 671, 715, 939, 1015
SfcI CTRYAG 3 cut(s) 252, 258, 361
SfuI TTCGAA 1 cut(s) 756
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 3 cut(s) 200, 363, 458
SmlI CTYRAG 2 cut(s) 734, 1057
SmoI CTYRAG 2 cut(s) 734, 1057
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 8 cut(s) 20, 33, 37, 53, 78, 84, 133, 588
SsiI CCGC 2 cut(s) 484, 810
SspI AATATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 476, 861, 957
StyD4I CCNGG 4 cut(s) 223, 337, 397, 849
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 756, 774, 937
TasI AATT 8 cut(s) 20, 33, 37, 53, 78, 84, 133, 588
TfiI GAWTC 3 cut(s) 205, 798, 1043
Tru1I TTAA 2 cut(s) 36, 300
Tru9I TTAA 2 cut(s) 36, 300
TscAI CASTG 3 cut(s) 460, 538, 589
TseFI GTSAC 2 cut(s) 26, 580
TseI GCWGC 8 cut(s) 129, 157, 238, 251, 254, 257, 719, 988
Tsp45I GTSAC 2 cut(s) 26, 580
TspDTI ATGAA 2 cut(s) 111, 378
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 3 cut(s) 460, 538, 589
VpaK11BI GGWCC 1 cut(s) 569
VspI ATTAAT 1 cut(s) 36
XceI RCATGY 2 cut(s) 772, 876
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 3 cut(s) 476, 861, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.