Rh5DG385600

Caspase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016675
Physical Location & Seq
Reverse (-)
59433390 .. 59434437
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG385600.1

Sequence Viewer

Length: 972 bp
ATGGAGAAGGAAAACAAGAGGTTGGCTGTTTTGGTGGGCTGCAATTACCCGAACACCCAAAACGAGCTCCATGGTTGCATAAATGATGTACTCACCATGCGCGACACTCTGGTGAATCGGTTTGGGTTCGATCCGAACCGCATTGAGCTATTGACTGATGATGGATCTGCATCAGTGTTGCCCACAGGCGCAAACATTAAGAAGGCACTTGATGCAATGGTTGACGAGGCTGAACCAGGGGATGTGCTCTACTTTCACTACAGTGGGCATGGAACAAGGATTCCATCATTGAAACCAGGCAGACCCTTCAGGCAGGATGAGGCAATTGTTCCTTGTGATTTCAATCTCATCACTGATGTGGATTTCAGACAATTAGTAAACCGCTTACCAAAGGGAGCAAGTTTTACAATTCTGTCGGACTCATGCCACAGTGGAGGTCTCATTGACAGAGAGAAAGAGCAGATTGGACCTTCTCATGTCACAACTGAAATTAGTGGCACATTATCCGTTTCCTATAGCAAGACCAAGGCAATTCCTTTTGATTCCATATTGGAGCACCTCACCTCATTAACTGGCATAAGCACATCTGATATTGCAACCCACTTGTTAGAGTTGTTTGCAGCCGACGCCAGCCTCAAGTTTCGCTTACCTCTACTCGAACTCAACTTCTTTGAGTCGTTGAAGCCGGATGATGAGGGAATTCTTCTGAGTGGGTGTCAAGCCAATGAGACATCGGCTGACATGATGACCCCGGTTATTACCGGTGGAAAGGCATGTGGAGCATTCAGCAATGCTATTGAAATGGTTTTAAAGAAGCATGAGTCTCCGCTAAGCAATAGAGAGGTCGTGATGCTGGCTAGAGTAGTTCTTAAAGAACAAGGCATTGAGCAGCATCCTTGTCTCTATTGCAATGATGAGAATGCCAACGCTACTTTCTTGTGTCAACTAGCTGCTCGGAACTCAAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0048046 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14

Protein Analysis

323

Amino Acids

35.33

Weight (kDa)

5.08

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 6 - 304 1.1e-35 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016675)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04200
fragaria_vesca FvH4_3g29720
malus_domestica MD03G1136900.v1.1
prunus_persica Prupe.6G122000_v2.0.a1
pyrus_communis pycom03g09280
rosa_chinensis RchiOBHm_Chr5g0055101
rosa_laevigata RLG00000034964
rosa_multiflora Rmu_sc0001694.1_g000018
rosa_roxburghii Rroxscaffold_1G00025350
rosa_samantha Rh5AG360800 Rh5BG371900 Rh5CG394000 Rh5DG385600
rosa_wichuraiana Rw5G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 970
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 139, 382, 827
AclWI GGATC 2 cut(s) 125, 172
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 1 cut(s) 90
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 4 cut(s) 292, 343, 682, 800
AjnI CCWGG 2 cut(s) 235, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AleI CACNNNNGTG 3 cut(s) 110, 261, 356
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 3 cut(s) 67, 148, 950
AluI AGCT 3 cut(s) 67, 148, 950
Alw21I GWGCWC 3 cut(s) 69, 249, 558
Alw26I GTCTC 4 cut(s) 443, 722, 828, 905
AlwI GGATC 2 cut(s) 125, 172
ApeKI GCWGC 4 cut(s) 39, 620, 889, 950
ApoI RAATTY 1 cut(s) 699
AsiGI ACCGGT 1 cut(s) 761
AspLEI GCGC 2 cut(s) 102, 191
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 3 cut(s) 85, 124, 553
AvaII GGWCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 3 cut(s) 69, 249, 558
BbvI GCAGC 4 cut(s) 26, 632, 901, 937
BccI CCATC 2 cut(s) 155, 292
BciT130I CCWGG 2 cut(s) 237, 297
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 4 cut(s) 443, 722, 828, 905
BfaI CTAG 2 cut(s) 858, 947
BfmI CTRYAG 2 cut(s) 259, 514
BisI GCNGC 4 cut(s) 40, 621, 890, 951
BlpI GCTNAGC 1 cut(s) 830
BlsI GCNGC 4 cut(s) 41, 622, 891, 952
Bme1390I CCNGG 3 cut(s) 237, 297, 752
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmrFI CCNGG 3 cut(s) 237, 297, 752
BmsI GCATC 4 cut(s) 179, 202, 840, 901
Bpu1102I GCTNAGC 1 cut(s) 830
BpuEI CTTGAG 2 cut(s) 620, 946
BpuMI CCSGG 1 cut(s) 752
BsaBI GATNNNNATC 2 cut(s) 169, 342
BsaHI GRCGYC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 70, 236, 525, 750
BsaWI WCCGGW 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 3 cut(s) 222, 796, 916
Bse8I GATNNNNATC 2 cut(s) 169, 342
BseBI CCWGG 2 cut(s) 237, 297
BseDI CCNNGG 4 cut(s) 70, 236, 525, 750
BseGI GGATG 4 cut(s) 247, 322, 694, 892
BseJI GATNNNNATC 2 cut(s) 169, 342
BseMI GCAATG 3 cut(s) 222, 796, 916
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 4 cut(s) 26, 632, 901, 937
Bsh1236I CGCG 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 761
BsiHKAI GWGCWC 3 cut(s) 69, 249, 558
BsiSI CCGG 3 cut(s) 686, 752, 762
BsmAI GTCTC 4 cut(s) 443, 722, 828, 905
BsmI GAATGC 2 cut(s) 782, 925
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 69, 249, 558
Bsp143I GATC 2 cut(s) 130, 164
Bsp1720I GCTNAGC 1 cut(s) 830
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 3 cut(s) 139, 382, 827
BspCNI CTCAG 1 cut(s) 699
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 2 cut(s) 125, 172
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 3 cut(s) 222, 796, 916
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 4 cut(s) 70, 236, 525, 750
BssMI GATC 2 cut(s) 130, 164
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 70, 525
Bst2UI CCWGG 2 cut(s) 237, 297
Bst4CI ACNGT 2 cut(s) 263, 431
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 631, 855
BstDEI CTNAG 2 cut(s) 707, 830
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 4 cut(s) 247, 322, 694, 892
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 102, 191
BstKTI GATC 2 cut(s) 133, 167
BstMAI GTCTC 4 cut(s) 443, 722, 828, 905
BstMBI GATC 2 cut(s) 130, 164
BstMWI GCNNNNNNNGC 3 cut(s) 212, 626, 779
BstNI CCWGG 2 cut(s) 237, 297
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 3 cut(s) 235, 295, 750
BstSFI CTRYAG 2 cut(s) 259, 514
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 4 cut(s) 26, 632, 901, 937
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 247, 322, 694, 892
BtsIMutI CAGTG 4 cut(s) 180, 268, 351, 436
Cac8I GCNNGC 2 cut(s) 631, 855
CfoI GCGC 2 cut(s) 102, 191
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 761
CviAII CATG 8 cut(s) 71, 97, 269, 423, 476, 742, 774, 818
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 707, 830
DpnI GATC 2 cut(s) 132, 166
DpnII GATC 2 cut(s) 130, 164
DraI TTTAAA 1 cut(s) 810
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 70, 525
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 235, 295
EcoT14I CCWWGG 2 cut(s) 70, 525
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 70, 525
FaeI CATG 8 cut(s) 74, 100, 272, 426, 479, 745, 777, 821
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 8 cut(s) 70, 96, 268, 422, 475, 741, 773, 817
Fnu4HI GCNGC 4 cut(s) 40, 621, 890, 951
FokI GGATG 4 cut(s) 254, 329, 701, 879
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 40, 621, 890, 951
FspBI CTAG 2 cut(s) 858, 947
GlaI GCGC 2 cut(s) 101, 190
GluI GCNGC 4 cut(s) 40, 621, 890, 951
HapII CCGG 3 cut(s) 686, 752, 762
HgaI GACGC 1 cut(s) 635
HhaI GCGC 2 cut(s) 102, 191
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 8 cut(s) 74, 100, 272, 426, 479, 745, 777, 821
Hin6I GCGC 2 cut(s) 100, 189
HinP1I GCGC 2 cut(s) 100, 189
HincII GTYRAC 2 cut(s) 223, 944
HindII GTYRAC 2 cut(s) 223, 944
HinfI GANTC 6 cut(s) 115, 280, 419, 542, 674, 821
HpaII CCGG 3 cut(s) 686, 752, 762
HphI GGTGA 3 cut(s) 85, 124, 553
Hpy166II GTNNAC 3 cut(s) 223, 379, 944
Hpy188I TCNGA 6 cut(s) 135, 368, 418, 589, 708, 957
Hpy188III TCNNGA 1 cut(s) 847
Hpy8I GTNNAC 3 cut(s) 223, 379, 944
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 3 cut(s) 196, 316, 480
HpyCH4III ACNGT 2 cut(s) 263, 431
HpyCH4V TGCA 7 cut(s) 42, 78, 170, 215, 596, 620, 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 626, 779
HpyF3I CTNAG 2 cut(s) 707, 830
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 8 cut(s) 74, 100, 272, 426, 479, 745, 777, 821
HspAI GCGC 2 cut(s) 100, 189
Kzo9I GATC 2 cut(s) 130, 164
LmnI GCTCC 4 cut(s) 72, 395, 553, 779
Lsp1109I GCAGC 4 cut(s) 26, 632, 901, 937
LweI GCATC 4 cut(s) 179, 202, 840, 901
MaeI CTAG 2 cut(s) 858, 947
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 132, 166
MboI GATC 2 cut(s) 130, 164
MboII GAAGA 1 cut(s) 695
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 3 cut(s) 69, 249, 558
MluCI AATT 7 cut(s) 43, 324, 371, 408, 489, 531, 699
MlyI GAGTC 3 cut(s) 413, 683, 830
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 4 cut(s) 198, 569, 809, 870
MslI CAYNNNNRTG 3 cut(s) 110, 261, 356
MspI CCGG 3 cut(s) 686, 752, 762
MspR9I CCNGG 3 cut(s) 237, 297, 752
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 782, 925
MvaI CCWGG 2 cut(s) 237, 297
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 212, 626, 779
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 130, 164
NlaIII CATG 8 cut(s) 74, 100, 272, 426, 479, 745, 777, 821
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 777
OliI CACNNNNGTG 3 cut(s) 110, 261, 356
PctI GAATGC 2 cut(s) 782, 925
PfeI GAWTC 3 cut(s) 115, 280, 542
PinAI ACCGGT 1 cut(s) 761
PkrI GCNGC 4 cut(s) 41, 622, 891, 952
PleI GAGTC 3 cut(s) 413, 682, 829
PpsI GAGTC 3 cut(s) 413, 682, 829
PsiI TTATAA 1 cut(s) 970
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 235, 295
PspGI CCWGG 2 cut(s) 235, 295
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 3 cut(s) 110, 261, 356
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 4 cut(s) 198, 569, 809, 870
SatI GCNGC 4 cut(s) 40, 621, 890, 951
Sau3AI GATC 2 cut(s) 130, 164
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 3 cut(s) 413, 683, 830
ScrFI CCNGG 3 cut(s) 237, 297, 752
SduI GDGCHC 3 cut(s) 69, 249, 558
SfaNI GCATC 4 cut(s) 179, 202, 840, 901
SfcI CTRYAG 2 cut(s) 259, 514
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 3 cut(s) 110, 261, 356
SmlI CTYRAG 2 cut(s) 635, 961
SmoI CTYRAG 2 cut(s) 635, 961
Sse9I AATT 7 cut(s) 43, 324, 371, 408, 489, 531, 699
SsiI CCGC 3 cut(s) 139, 382, 827
SspMI CTAG 2 cut(s) 858, 947
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 235, 295, 750
StyI CCWWGG 2 cut(s) 70, 525
TaaI ACNGT 2 cut(s) 263, 431
TaqI TCGA 2 cut(s) 129, 657
TasI AATT 7 cut(s) 43, 324, 371, 408, 489, 531, 699
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 3 cut(s) 115, 280, 542
Tru1I TTAA 4 cut(s) 198, 569, 809, 870
Tru9I TTAA 4 cut(s) 198, 569, 809, 870
TscAI CASTG 4 cut(s) 180, 268, 358, 436
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 4 cut(s) 39, 620, 889, 950
Tsp45I GTSAC 1 cut(s) 478
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 4 cut(s) 180, 268, 358, 436
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 777
XspI CTAG 2 cut(s) 858, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.