pycom03g09280

Caspase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016675
Physical Location & Seq
Forward (+)
7758257 .. 7759245
989 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09280.2

Sequence Viewer

Length: 387 bp
ATGGAGAACATTGAAAGGAAGAGGTTGGCCGTTTTGGTGGGGTGCAATTACCCAAACACCAGAAACGAGCTGCATGGTTGCATAAACGATGTGCTCACCATGAGAGACACACTTGTGAGTCGGTTTGGGTTCGATCCGAGCGACATTCAGCTGTTGACTGATGCAGCAGCAGCAGATGCTGGTTCTGGTGGTTCCTTATCAGTTTTGCCAACAGGTGCAAACATTAAGAAGGCACTTGGTGAAATGGTTGATCAGGCTAAACCACGTGATGTCTTGTACTTTCATTACAGTGGCCATGGAACAAGGATTCCCTCATTGAAACCAGGCAACCCCTTCAGGCAGGATGAGGCAATTGTGCCTTGTGATTTCAACCTTATCACTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0048046 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14

Protein Analysis

129

Amino Acids

13.89

Weight (kDa)

5.85

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016675)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04200
fragaria_vesca FvH4_3g29720
malus_domestica MD03G1136900.v1.1
prunus_persica Prupe.6G122000_v2.0.a1
pyrus_communis pycom03g09280
rosa_chinensis RchiOBHm_Chr5g0055101
rosa_laevigata RLG00000034964
rosa_multiflora Rmu_sc0001694.1_g000018
rosa_roxburghii Rroxscaffold_1G00025350
rosa_samantha Rh5AG360800 Rh5BG371900 Rh5CG394000 Rh5DG385600
rosa_wichuraiana Rw5G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 2 cut(s) 27, 292
AcuI CTGAAG 1 cut(s) 319
AcvI CACGTG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 3 cut(s) 14, 319, 370
AjnI CCWGG 1 cut(s) 322
AleI CACNNNNGTG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 292, 324
AluBI AGCT 2 cut(s) 70, 151
AluI AGCT 2 cut(s) 70, 151
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 2 cut(s) 27, 292
ApeKI GCWGC 4 cut(s) 70, 164, 167, 170
AsuHPI GGTGA 2 cut(s) 88, 251
BalI TGGCCA 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 57, 176, 179, 182
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 99
BisI GCNGC 4 cut(s) 71, 165, 168, 171
BlsI GCNGC 4 cut(s) 72, 166, 169, 172
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 151, 166
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 4 cut(s) 57, 176, 179, 182
BshFI GGCC 2 cut(s) 29, 294
BsiHKAI GWGCWC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 29, 294
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 133, 250
Bsp19I CCATGG 1 cut(s) 295
BspANI GGCC 2 cut(s) 29, 294
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 133, 250
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 136, 253
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 133, 250
BstMWI GCNNNNNNNGC 2 cut(s) 170, 176
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 57, 176, 179, 182
BsuRI GGCC 2 cut(s) 29, 294
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 295, 378
CaiI CAGNNNCTG 1 cut(s) 179
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 74, 100, 296
CviJI RGCY 5 cut(s) 29, 70, 151, 257, 294
CviKI_1 RGCY 5 cut(s) 29, 70, 151, 257, 294
CviQI GTAC 1 cut(s) 277
DpnI GATC 2 cut(s) 135, 252
DpnII GATC 2 cut(s) 133, 250
DraIII CACNNNGTG 1 cut(s) 239
EaeI YGGCCR 2 cut(s) 27, 292
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 3 cut(s) 77, 103, 299
FaiI YATR 4 cut(s) 75, 83, 101, 297
FatI CATG 3 cut(s) 73, 99, 295
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 71, 165, 168, 171
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 4 cut(s) 71, 165, 168, 171
GluI GCNGC 4 cut(s) 71, 165, 168, 171
HaeIII GGCC 2 cut(s) 29, 294
Hin1II CATG 3 cut(s) 77, 103, 299
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 2 cut(s) 118, 307
HphI GGTGA 2 cut(s) 88, 251
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 223, 343
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 45, 73, 81, 164, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 176
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 3 cut(s) 77, 103, 299
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 133, 250
Lsp1109I GCAGC 4 cut(s) 57, 176, 179, 182
LweI GCATC 2 cut(s) 151, 166
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 135, 252
MboI GATC 2 cut(s) 133, 250
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 46, 351
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 3 cut(s) 15, 322, 340
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 113, 288
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 170, 176
NcoI CCATGG 1 cut(s) 295
NdeII GATC 2 cut(s) 133, 250
NlaIII CATG 3 cut(s) 77, 103, 299
NlaIV GGNNCC 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 4 cut(s) 72, 166, 169, 172
PleI GAGTC 1 cut(s) 126
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 322
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 113, 288
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 71, 165, 168, 171
Sau3AI GATC 2 cut(s) 133, 250
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 26, 72, 153, 217, 268, 375
SfaNI GCATC 2 cut(s) 151, 166
SmiMI CAYNNNNRTG 2 cut(s) 113, 288
Sse9I AATT 2 cut(s) 46, 351
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 46, 351
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 295, 385
TseI GCWGC 4 cut(s) 70, 164, 167, 170
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 2 cut(s) 295, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.