Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001694.1

Orthogroup ID

OG0016675

Physical Location & Seq

Genomic Coordinates Reverse (-)

109588 .. 110473

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001694.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggagaaggaaaacaagatgttggctgttttggtgggctgcaattacccgaacaccagaaacgagctccatggttgcataaatgatgtactcaccatgcgcgacacgctggtgaatcggtttgggttcgatccgaaccgcattgagctattgactgatgatggatctgcatcactgttgcccacaggcgcaaacattaagaaggcacttgatgcaatggttgaccaggctgaaccaggggatgtgctctactttcactacagtgggcatggaacaaggattccatcattgaaaccaggcagacccttcaggcaggatgaggcaattgtgccttgtgatttcaatctcatcactgatgtggatttcagacaattagtaaaccgcttaccaaagggagcaagctttacaattctgtcggactcatgccacagtggaggtctcattgacagagagaaagagcagattggaccttctcatgccacaactgaaattagtggcacattatccgtttcctatagcaagaccaaggcaattccttttgagtccatattggagcacctcacctcattaactggcataagcacatctgatattgcaacccacttgttagagttgtttgcagccgacgccagcctcaagtttcgcttacctctactcgaactcaacttctttgagtcgttgaagccggatgatgagggaattcttctgagtgggtgtcaagccgatgagacatcggctgacatgatgaccccggttattaccgaggagtttggaggcttgacgatcggagctttactccggaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0048046 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

269

Amino Acids

29.46

Weight (kDa)

4.88

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04200
fragaria_vesca	FvH4_3g29720
malus_domestica	MD03G1136900.v1.1
prunus_persica	Prupe.6G122000_v2.0.a1
pyrus_communis	pycom03g09280
rosa_chinensis	RchiOBHm_Chr5g0055101
rosa_laevigata	RLG00000034964
rosa_multiflora	Rmu_sc0001694.1_g000018
rosa_roxburghii	Rroxscaffold_1G00025350
rosa_samantha	Rh5AG360800 Rh5BG371900 Rh5CG394000 Rh5DG385600
rosa_wichuraiana	Rw5G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	798
AciI	CCGC	2 cut(s)	139, 382
AclWI	GGATC	2 cut(s)	125, 172
AcsI	RAATTY	1 cut(s)	699
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	292, 343, 682
AjnI	CCWGG	3 cut(s)	225, 235, 295
AleI	CACNNNNGTG	3 cut(s)	110, 261, 356
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	4 cut(s)	67, 148, 402, 791
AluI	AGCT	4 cut(s)	67, 148, 402, 791
Alw21I	GWGCWC	3 cut(s)	69, 249, 558
Alw26I	GTCTC	2 cut(s)	443, 722
AlwI	GGATC	2 cut(s)	125, 172
Aor13HI	TCCGGA	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	39, 620
ApoI	RAATTY	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	102, 191
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	85, 124, 553
AvaII	GGWCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	69, 249, 558
BbvI	GCAGC	2 cut(s)	26, 632
BccI	CCATC	2 cut(s)	155, 292
BciT130I	CCWGG	3 cut(s)	227, 237, 297
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	2 cut(s)	443, 722
BfmI	CTRYAG	2 cut(s)	259, 514
BisI	GCNGC	2 cut(s)	40, 621
BlsI	GCNGC	2 cut(s)	41, 622
Bme1390I	CCNGG	4 cut(s)	227, 237, 297, 752
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmrFI	CCNGG	4 cut(s)	227, 237, 297, 752
BmsI	GCATC	2 cut(s)	179, 202
BplI	GAGNNNNNCTC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	805
BsaBI	GATNNNNATC	2 cut(s)	169, 342
BsaHI	GRCGYC	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	5 cut(s)	70, 236, 525, 750, 762
BsaWI	WCCGGW	1 cut(s)	798
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	2 cut(s)	169, 342
BseAI	TCCGGA	1 cut(s)	798
BseBI	CCWGG	3 cut(s)	227, 237, 297
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	5 cut(s)	70, 236, 525, 750, 762
BseGI	GGATG	3 cut(s)	247, 322, 694
BseJI	GATNNNNATC	2 cut(s)	169, 342
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	26, 632
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	786
BshVI	ATCGAT	1 cut(s)	805
BsiEI	CGRYCG	1 cut(s)	786
BsiHKAI	GWGCWC	3 cut(s)	69, 249, 558
BsiSI	CCGG	3 cut(s)	686, 752, 799
BsmAI	GTCTC	2 cut(s)	443, 722
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	69, 249, 558
Bsp13I	TCCGGA	1 cut(s)	798
Bsp143I	GATC	3 cut(s)	130, 164, 783
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	2 cut(s)	139, 382
BspCNI	CTCAG	1 cut(s)	699
BspDI	ATCGAT	1 cut(s)	805
BspEI	TCCGGA	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	125, 172
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	5 cut(s)	70, 236, 525, 750, 762
BssMI	GATC	3 cut(s)	130, 164, 783
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	70, 525
Bst2UI	CCWGG	3 cut(s)	227, 237, 297
Bst4CI	ACNGT	3 cut(s)	177, 263, 431
BstACI	GRCGYC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	400, 631
BstDEI	CTNAG	1 cut(s)	707
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	247, 322, 694
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	102, 191
BstKTI	GATC	3 cut(s)	133, 167, 786
BstMAI	GTCTC	2 cut(s)	443, 722
BstMBI	GATC	3 cut(s)	130, 164, 783
BstMCI	CGRYCG	1 cut(s)	786
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 212, 626
BstNI	CCWGG	3 cut(s)	227, 237, 297
BstSCI	CCNGG	4 cut(s)	225, 235, 295, 750
BstSFI	CTRYAG	2 cut(s)	259, 514
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	26, 632
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	805
BsuTUI	ATCGAT	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	247, 322, 694
BtsIMutI	CAGTG	4 cut(s)	173, 268, 351, 436
Cac8I	GCNNGC	2 cut(s)	400, 631
CfoI	GCGC	2 cut(s)	102, 191
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	805
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	6 cut(s)	71, 97, 269, 423, 476, 742
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	3 cut(s)	132, 166, 785
DpnII	GATC	3 cut(s)	130, 164, 783
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	70, 525
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	3 cut(s)	225, 235, 295
EcoT14I	CCWWGG	2 cut(s)	70, 525
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	70, 525
FaeI	CATG	6 cut(s)	74, 100, 272, 426, 479, 745
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FatI	CATG	6 cut(s)	70, 96, 268, 422, 475, 741
Fnu4HI	GCNGC	2 cut(s)	40, 621
FokI	GGATG	3 cut(s)	254, 329, 701
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	40, 621
GlaI	GCGC	2 cut(s)	101, 190
GluI	GCNGC	2 cut(s)	40, 621
HapII	CCGG	3 cut(s)	686, 752, 799
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	2 cut(s)	102, 191
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	6 cut(s)	74, 100, 272, 426, 479, 745
Hin6I	GCGC	2 cut(s)	100, 189
HinP1I	GCGC	2 cut(s)	100, 189
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	6 cut(s)	115, 280, 419, 542, 674, 802
HpaII	CCGG	3 cut(s)	686, 752, 799
HphI	GGTGA	3 cut(s)	85, 124, 553
Hpy166II	GTNNAC	2 cut(s)	223, 379
Hpy188I	TCNGA	6 cut(s)	135, 368, 418, 589, 708, 788
Hpy188III	TCNNGA	1 cut(s)	799
Hpy8I	GTNNAC	2 cut(s)	223, 379
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	196, 316, 480
HpyCH4III	ACNGT	3 cut(s)	177, 263, 431
HpyCH4V	TGCA	6 cut(s)	42, 78, 170, 215, 596, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 212, 626
HpyF3I	CTNAG	1 cut(s)	707
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	6 cut(s)	74, 100, 272, 426, 479, 745
HspAI	GCGC	2 cut(s)	100, 189
Kpn2I	TCCGGA	1 cut(s)	798
Kzo9I	GATC	3 cut(s)	130, 164, 783
LmnI	GCTCC	4 cut(s)	72, 395, 553, 788
Lsp1109I	GCAGC	2 cut(s)	26, 632
LweI	GCATC	2 cut(s)	179, 202
MalI	GATC	3 cut(s)	132, 166, 785
MboI	GATC	3 cut(s)	130, 164, 783
MboII	GAAGA	1 cut(s)	695
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	3 cut(s)	69, 249, 558
MluCI	AATT	7 cut(s)	43, 324, 371, 408, 489, 531, 699
MlyI	GAGTC	3 cut(s)	413, 551, 683
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	9 cut(s)	313, 428, 569, 574, 644, 660, 688, 757, 767
MroI	TCCGGA	1 cut(s)	798
MseI	TTAA	2 cut(s)	198, 569
MslI	CAYNNNNRTG	3 cut(s)	110, 261, 356
MspI	CCGG	3 cut(s)	686, 752, 799
MspR9I	CCNGG	4 cut(s)	227, 237, 297, 752
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	3 cut(s)	227, 237, 297
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	106, 212, 626
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	3 cut(s)	130, 164, 783
NlaIII	CATG	6 cut(s)	74, 100, 272, 426, 479, 745
OliI	CACNNNNGTG	3 cut(s)	110, 261, 356
PfeI	GAWTC	3 cut(s)	115, 280, 802
PkrI	GCNGC	2 cut(s)	41, 622
Ple19I	CGATCG	1 cut(s)	786
PleI	GAGTC	3 cut(s)	413, 550, 682
PpsI	GAGTC	3 cut(s)	413, 550, 682
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	225, 235, 295
PspGI	CCWGG	3 cut(s)	225, 235, 295
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	786
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	3 cut(s)	110, 261, 356
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	198, 569
SatI	GCNGC	2 cut(s)	40, 621
Sau3AI	GATC	3 cut(s)	130, 164, 783
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	3 cut(s)	413, 551, 683
ScrFI	CCNGG	4 cut(s)	227, 237, 297, 752
SduI	GDGCHC	3 cut(s)	69, 249, 558
SetI	ASST	9 cut(s)	69, 150, 404, 439, 472, 561, 566, 652, 793
SfaNI	GCATC	2 cut(s)	179, 202
SfcI	CTRYAG	2 cut(s)	259, 514
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	3 cut(s)	110, 261, 356
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	7 cut(s)	43, 324, 371, 408, 489, 531, 699
SsiI	CCGC	2 cut(s)	139, 382
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	225, 235, 295, 750
StyI	CCWWGG	2 cut(s)	70, 525
TaaI	ACNGT	3 cut(s)	177, 263, 431
TaqI	TCGA	3 cut(s)	129, 657, 805
TasI	AATT	7 cut(s)	43, 324, 371, 408, 489, 531, 699
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	3 cut(s)	115, 280, 802
Tru1I	TTAA	2 cut(s)	198, 569
Tru9I	TTAA	2 cut(s)	198, 569
TscAI	CASTG	4 cut(s)	180, 268, 358, 436
TseI	GCWGC	2 cut(s)	39, 620
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	4 cut(s)	180, 268, 358, 436
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.