Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006469

Physical Location & Seq

Genomic Coordinates Forward (+)

27663703 .. 27664677

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGACTTTCTTCATCAAAGTATATGGATTCGATACGTGACTTCAGTTTATTGGTCTATCACTACACTCACAACAGTTGGCTATGGAGATTTACATCCTGTCAATACAAGGGAGATGATCTTTGACATATTCTACATGCTTTTCAACCTTGGATTGACATCACACTTGATTGGAAATATGACCAACTTGGTTGTCCATGGGACTAGTCGAACACGAAAATTTGATCAGATGCTTGATCATTTGTGTCTGAAGTTCAAGACAGATGCAGAGGGACTCCAGCAACAAGAGACTCTTGATTCACTTCCTAAAGCCATCCGTTCAAGTGTCTCACATTATCTGTTTTACTCTCTTGTCGATAAGGTGTACTTGTTTCATGGGGTTTCAAATGACTTGCTTTTTCAGTTGGTCTCAGAGATGAAAGCCGAGTACTTTCCTCCCAAAGAAGACATAATATTGCAGAATGAAGCACCTACAGATTTCTACATACACAACTGGTGCTGCGGAGAAAACCAGAAGATGAATCCAGAGGCCATGCCACTCGGTGCTGCTTTGTGTAGAACTGATCAAAGTCGCTCGGAGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010053 GO:0010054 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0042221 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071804 GO:0071805 GO:0071944 GO:0080147 GO:0090333 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0099094 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

197

Amino Acids

22.7

Weight (kDa)

5.39

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	10 - 65	3.7e-13	Ion channel
Ion_trans	PF00520	12 - 72	1.8e-12	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26650 AT2G26650
fragaria_vesca	FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_3g32370
malus_domestica	MD02G1037900.v1.1 MD15G1178200.v1.1
prunus_persica	Prupe.7G237400_v2.0.a1 Prupe.7G237400_v2.0.a1 Prupe.7G237400_v2.0.a1
pyrus_communis	pycom15g15990
rosa_chinensis	RchiOBHm_Chr2g0089421
rosa_laevigata	RLG00000016026
rosa_multiflora	Rmu_sc0000197.1_g000013
rosa_roxburghii	Rroxscaffold_2G00151950
rosa_rugosa	Rorug02G0000500 Rorug02G0000600 Rorug02G0000700
rosa_samantha	Rh2AG045800 Rh2BG044300 Rh2CG046200 Rh2DG045700
rosa_wichuraiana	Rw2G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	30, 272
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	2 cut(s)	368, 431
AgsI	TTSAA	4 cut(s)	148, 259, 324, 387
AhlI	ACTAGT	1 cut(s)	206
Alw26I	GTCTC	3 cut(s)	284, 334, 415
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	501, 548
ApoI	RAATTY	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	12, 453
BbvI	GCAGC	2 cut(s)	488, 535
BccI	CCATC	1 cut(s)	323
BclI	TGATCA	3 cut(s)	226, 238, 565
BcoDI	GTCTC	3 cut(s)	284, 334, 415
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	2 cut(s)	502, 549
BlsI	GCNGC	2 cut(s)	503, 550
BmcAI	AGTACT	1 cut(s)	431
BmsI	GCATC	2 cut(s)	222, 256
BpiI	GAAGAC	2 cut(s)	12, 453
BpmI	CTGGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	2 cut(s)	96, 160
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	151, 199
Bse1I	ACTGG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	96, 160
BseDI	CCNNGG	2 cut(s)	151, 199
BseGI	GGATG	2 cut(s)	97, 315
BseJI	GATNNNNATC	2 cut(s)	96, 160
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	488, 535
BshFI	GGCC	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	217, 288
BsmAI	GTCTC	3 cut(s)	284, 334, 415
BsmFI	GGGAC	2 cut(s)	217, 288
BsnI	GGCC	1 cut(s)	533
Bso31I	GGTCTC	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	120, 226, 238, 565, 585
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	151, 199
BssMI	GATC	5 cut(s)	120, 226, 238, 565, 585
BssT1I	CCWWGG	2 cut(s)	151, 199
Bst4CI	ACNGT	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	412
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	97, 315
BstKTI	GATC	5 cut(s)	123, 229, 241, 568, 588
BstMAI	GTCTC	3 cut(s)	284, 334, 415
BstMBI	GATC	5 cut(s)	120, 226, 238, 565, 585
BstNSI	RCATGY	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	488, 535
BstV2I	GAAGAC	2 cut(s)	12, 453
BsuRI	GGCC	1 cut(s)	533
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	97, 315
Csp6I	GTAC	2 cut(s)	367, 430
CviAII	CATG	4 cut(s)	139, 200, 377, 535
CviJI	RGCY	4 cut(s)	84, 314, 425, 533
CviKI_1	RGCY	4 cut(s)	84, 314, 425, 533
CviQI	GTAC	2 cut(s)	367, 430
DdeI	CTNAG	1 cut(s)	412
DpnI	GATC	5 cut(s)	122, 228, 240, 567, 587
DpnII	GATC	5 cut(s)	120, 226, 238, 565, 585
DraIII	CACNNNGTG	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	151, 199
Eco31I	GGTCTC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	30, 272
EcoT14I	CCWWGG	2 cut(s)	151, 199
ErhI	CCWWGG	2 cut(s)	151, 199
FaeI	CATG	4 cut(s)	142, 203, 380, 538
FalI	AAGNNNNNCTT	5 cut(s)	29, 279, 311, 353, 385
FaqI	GGGAC	2 cut(s)	217, 288
FatI	CATG	4 cut(s)	138, 199, 376, 534
FbaI	TGATCA	3 cut(s)	226, 238, 565
Fnu4HI	GCNGC	2 cut(s)	502, 549
FokI	GGATG	2 cut(s)	84, 302
Fsp4HI	GCNGC	2 cut(s)	502, 549
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	502, 549
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	533
Hin1II	CATG	4 cut(s)	142, 203, 380, 538
HinfI	GANTC	5 cut(s)	31, 276, 292, 299, 523
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	5 cut(s)	231, 252, 415, 580, 590
Hpy188III	TCNNGA	3 cut(s)	259, 296, 527
Hpy8I	GTNNAC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	269, 460
HpyF3I	CTNAG	1 cut(s)	412
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	142, 203, 380, 538
Ksp22I	TGATCA	3 cut(s)	226, 238, 565
Kzo9I	GATC	5 cut(s)	120, 226, 238, 565, 585
LpnPI	CCDG	5 cut(s)	114, 293, 481, 527, 540
Lsp1109I	GCAGC	2 cut(s)	488, 535
LweI	GCATC	2 cut(s)	222, 256
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	122, 228, 240, 567, 587
MboI	GATC	5 cut(s)	120, 226, 238, 565, 585
MboII	GAAGA	4 cut(s)	5, 17, 458, 529
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	270, 286
MnlI	CCTC	3 cut(s)	265, 447, 523
MroXI	GAANNNNTTC	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	5 cut(s)	120, 226, 238, 565, 585
NlaIII	CATG	4 cut(s)	142, 203, 380, 538
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	31, 299, 523
PkrI	GCNGC	2 cut(s)	503, 550
PleI	GAGTC	2 cut(s)	270, 286
PpsI	GAGTC	2 cut(s)	270, 286
Ppu21I	YACGTR	1 cut(s)	40
RsaI	GTAC	2 cut(s)	368, 431
RsaNI	GTAC	2 cut(s)	367, 430
SatI	GCNGC	2 cut(s)	502, 549
Sau3AI	GATC	5 cut(s)	120, 226, 238, 565, 585
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	2 cut(s)	270, 286
SetI	ASST	4 cut(s)	42, 153, 366, 475
SfaNI	GCATC	2 cut(s)	222, 256
SfcI	CTRYAG	1 cut(s)	474
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	504
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	1 cut(s)	207
StyI	CCWWGG	2 cut(s)	151, 199
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	34, 211, 357
TasI	AATT	1 cut(s)	221
TatI	WGTACW	2 cut(s)	366, 429
TfiI	GAWTC	3 cut(s)	31, 299, 523
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	501, 548
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	5 cut(s)	5, 365, 434, 480, 536
TspGWI	ACGGA	1 cut(s)	308
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	207
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.