Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006469

Physical Location & Seq

Genomic Coordinates Reverse (-)

73480 .. 79444

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTATGTATTACCCCGAACGGCGTGGTCCCGTCGCAGCCACGATTTCTGGTTATCGTCCGTCCAGTCCAGTCCGTCCAGTCCAGTCCAGTCCAGTCCTGTCCTAGTAGCAAATAACACAAATAGAGTAGTAGCACCTCCACCGTTTCTCCTCCCAAATCAGTCGGCGGTTCTTGGTGCGATGCCTGCTATGAAGAAGCATACTGAGCGCAGTCACATTGGGAATGTATTCAACAAGTTGCTGAAGCAGATTGGAAGTCCTGTGGATTTTGAACTTCCAGATTGGTTCAGTAAATGGAAACCCATGAACTACACTTTTATAAAGCGCAATATATATCTCACTAAGAGGATTAAAAGACGACTTGAAGATGATGGAATATTCTGCTCATGCTGCCCATCATCACCAGGGTCTCCTAGTGTTTGTGGTAGAGATTGCCATTGTGGGATGCTACTGTCTAGCTGCTCCTCAGGCTGTAAATGTGGAAGTTCATGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAACTGGTGAAGACTGAGAAATGTGGTTCTGGAATCGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATACGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGACGCCACGTACAAGGGGAACAAATCAAGATATATAAACCATAGCTGTTGTCCCAATACTGAGATGCAAAAATGGATAATCGATGGTGAAACAAGAATAGGCATATTTGCAACTTGCGACATAAAAAAGGGCGATCACCTCACCTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGCGGTGCTGTTGGTTGTCGTGAAAAACTTGGTGTACGACCTACCAAACCAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCATGCCAGGTGGCTGTGTCCTCTCCCAAAGTGAAAACAATGCTCTCTGCAAAAGATGTTTATCCGAATGGTGGTTTTCCTATAGGAAGTTCTCAACCTATCCGTAAGGACCATAACCAAGGTGGTACTGCTTGTAATTGCATTGATGAAGTGATTCGAATACATCGTCCCATAAATCAGAGGTCATTCGGGGTTATCAAACGGTTTGATAATCATTCCAAAAAACACGCGATCATGTTTGAAGATGGTGGCATTGAAATCCTGGACATGTCGAAAGAAGAATGGGAATTTGTAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010053 GO:0010054 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0042221 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071804 GO:0071805 GO:0071944 GO:0080147 GO:0090333 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0099094 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

431

Amino Acids

48.42

Weight (kDa)

8.89

Isoelectric Point (pI)

62.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	186 - 292	1.4e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26650 AT2G26650
fragaria_vesca	FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_1g03960 FvH4_3g32370
malus_domestica	MD02G1037900.v1.1 MD15G1178200.v1.1
prunus_persica	Prupe.7G237400_v2.0.a1 Prupe.7G237400_v2.0.a1 Prupe.7G237400_v2.0.a1
pyrus_communis	pycom15g15990
rosa_chinensis	RchiOBHm_Chr2g0089421
rosa_laevigata	RLG00000016026
rosa_multiflora	Rmu_sc0000197.1_g000013
rosa_roxburghii	Rroxscaffold_2G00151950
rosa_rugosa	Rorug02G0000500 Rorug02G0000600 Rorug02G0000700
rosa_samantha	Rh2AG045800 Rh2BG044300 Rh2CG046200 Rh2DG045700
rosa_wichuraiana	Rw2G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccII	CGCG	1 cut(s)	1223
AciI	CCGC	3 cut(s)	167, 572, 912
AcsI	RAATTY	2 cut(s)	596, 1280
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	3 cut(s)	731, 945, 1120
AfiI	CCNNNNNNNGG	1 cut(s)	1064
AflIII	ACRYGT	2 cut(s)	638, 1260
AgsI	TTSAA	7 cut(s)	232, 272, 365, 884, 985, 1235, 1250
AhlI	ACTAGT	1 cut(s)	988
AjnI	CCWGG	3 cut(s)	403, 999, 1254
AluBI	AGCT	2 cut(s)	459, 765
AluI	AGCT	2 cut(s)	459, 765
Alw26I	GTCTC	1 cut(s)	414
AlwNI	CAGNNNCTG	1 cut(s)	977
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	4 cut(s)	36, 390, 459, 977
ApoI	RAATTY	2 cut(s)	596, 1280
ArsI	GACNNNNNNTTYG	2 cut(s)	1144, 1176
Asp700I	GAANNNNTTC	2 cut(s)	227, 1146
AspLEI	GCGC	2 cut(s)	210, 327
AspS9I	GGNCC	2 cut(s)	27, 1102
AsuHPI	GGTGA	5 cut(s)	393, 550, 818, 848, 853
AsuII	TTCGAA	1 cut(s)	1150
AvaII	GGWCC	2 cut(s)	27, 1102
AxyI	CCTNAGG	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	48, 377, 446, 964
BccI	CCATC	4 cut(s)	365, 403, 797, 1232
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	3 cut(s)	405, 1001, 1256
BcoDI	GTCTC	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	988
BfaI	CTAG	4 cut(s)	104, 414, 456, 989
BfmI	CTRYAG	1 cut(s)	1074
BisI	GCNGC	4 cut(s)	37, 391, 460, 978
BlsI	GCNGC	4 cut(s)	38, 392, 461, 979
Bme1390I	CCNGG	3 cut(s)	405, 1001, 1256
Bme18I	GGWCC	2 cut(s)	27, 1102
BmgT120I	GGNCC	2 cut(s)	27, 1102
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	3 cut(s)	405, 1001, 1256
BmsI	GCATC	3 cut(s)	171, 435, 774
BpiI	GAAGAC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	1150
Bsa29I	ATCGAT	1 cut(s)	801
BsaAI	YACGTR	1 cut(s)	729
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaHI	GRCGYC	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	404, 670, 1111
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	1064
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	7 cut(s)	64, 69, 78, 83, 88, 93, 540
Bse21I	CCTNAGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	907
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	3 cut(s)	405, 1001, 1256
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	404, 670, 1111
BseGI	GGATG	2 cut(s)	450, 580
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	1 cut(s)	1064
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	4 cut(s)	195, 480, 537, 771
BseNI	ACTGG	7 cut(s)	64, 69, 78, 83, 88, 93, 540
BseRI	GAGGAG	2 cut(s)	140, 454
BseXI	GCAGC	4 cut(s)	48, 377, 446, 964
BsgI	GTGCAG	1 cut(s)	912
Bsh1236I	CGCG	1 cut(s)	1223
BshFI	GGCC	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	3 cut(s)	13, 756, 1146
BslI	CCNNNNNNNGG	1 cut(s)	1064
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	3 cut(s)	13, 756, 1146
BsnI	GGCC	1 cut(s)	517
Bso31I	GGTCTC	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	1150
Bsp143I	GATC	3 cut(s)	853, 895, 1224
BspACI	CCGC	3 cut(s)	167, 572, 912
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	4 cut(s)	196, 479, 538, 772
BspDI	ATCGAT	1 cut(s)	801
BspFNI	CGCG	1 cut(s)	1223
BspLI	GGNNCC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	1150
BspTNI	GGTCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	907
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	7 cut(s)	64, 69, 78, 83, 88, 93, 540
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	3 cut(s)	404, 670, 1111
BssMI	GATC	3 cut(s)	853, 895, 1224
BssNI	GRCGYC	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	1111
Bst2UI	CCWGG	3 cut(s)	405, 1001, 1256
Bst4CI	ACNGT	4 cut(s)	144, 453, 671, 1197
BstACI	GRCGYC	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	1150
BstC8I	GCNNGC	2 cut(s)	186, 997
BstDEI	CTNAG	5 cut(s)	204, 342, 466, 546, 780
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	2 cut(s)	450, 580
BstFNI	CGCG	1 cut(s)	1223
BstHHI	GCGC	2 cut(s)	210, 327
BstKTI	GATC	3 cut(s)	856, 898, 1227
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	3 cut(s)	853, 895, 1224
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 205, 390, 468
BstNI	CCWGG	3 cut(s)	405, 1001, 1256
BstNSI	RCATGY	3 cut(s)	642, 999, 1264
BstSCI	CCNGG	3 cut(s)	403, 999, 1254
BstSFI	CTRYAG	1 cut(s)	1074
BstUI	CGCG	1 cut(s)	1223
BstV1I	GCAGC	4 cut(s)	48, 377, 446, 964
BstV2I	GAAGAC	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	801
Bsu36I	CCTNAGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	670
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	450, 580
Cac8I	GCNNGC	2 cut(s)	186, 997
CaiI	CAGNNNCTG	1 cut(s)	977
CfoI	GCGC	2 cut(s)	210, 327
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	27, 1102
ClaI	ATCGAT	1 cut(s)	801
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	3 cut(s)	730, 944, 1119
CviAII	CATG	7 cut(s)	304, 387, 489, 639, 996, 1228, 1261
CviJI	RGCY	7 cut(s)	39, 459, 471, 517, 652, 765, 1007
CviKI_1	RGCY	7 cut(s)	39, 459, 471, 517, 652, 765, 1007
CviQI	GTAC	3 cut(s)	730, 944, 1119
DdeI	CTNAG	5 cut(s)	204, 342, 466, 546, 780
DpnI	GATC	3 cut(s)	855, 897, 1226
DpnII	GATC	3 cut(s)	853, 895, 1224
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	1111
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	27, 1102
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	403, 999, 1254
EcoT14I	CCWWGG	1 cut(s)	1111
ErhI	CCWWGG	1 cut(s)	1111
FaeI	CATG	7 cut(s)	307, 390, 492, 642, 999, 1231, 1264
FaqI	GGGAC	3 cut(s)	13, 756, 1146
FatI	CATG	7 cut(s)	303, 386, 488, 638, 995, 1227, 1260
Fnu4HI	GCNGC	4 cut(s)	37, 391, 460, 978
FokI	GGATG	2 cut(s)	457, 587
Fsp4HI	GCNGC	4 cut(s)	37, 391, 460, 978
FspBI	CTAG	4 cut(s)	104, 414, 456, 989
GlaI	GCGC	2 cut(s)	209, 326
GluI	GCNGC	4 cut(s)	37, 391, 460, 978
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	2 cut(s)	210, 327
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	7 cut(s)	307, 390, 492, 642, 999, 1231, 1264
Hin6I	GCGC	2 cut(s)	208, 325
HinP1I	GCGC	2 cut(s)	208, 325
HinfI	GANTC	2 cut(s)	564, 1147
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	5 cut(s)	393, 550, 818, 848, 853
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	3 cut(s)	495, 1059, 1173
Hpy188III	TCNNGA	6 cut(s)	278, 561, 707, 747, 899, 929
Hpy8I	GTNNAC	1 cut(s)	944
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4III	ACNGT	4 cut(s)	144, 453, 671, 1197
HpyCH4IV	ACGT	2 cut(s)	612, 728
HpyCH4V	TGCA	5 cut(s)	787, 830, 893, 1043, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 205, 390, 468
HpyF3I	CTNAG	5 cut(s)	204, 342, 466, 546, 780
HpySE526I	ACGT	2 cut(s)	612, 728
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	7 cut(s)	307, 390, 492, 642, 999, 1231, 1264
HspAI	GCGC	2 cut(s)	208, 325
Kzo9I	GATC	3 cut(s)	853, 895, 1224
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	4 cut(s)	48, 377, 446, 964
LweI	GCATC	3 cut(s)	171, 435, 774
MaeI	CTAG	4 cut(s)	104, 414, 456, 989
MaeII	ACGT	2 cut(s)	612, 728
MaeIII	GTNAC	2 cut(s)	212, 1285
MalI	GATC	3 cut(s)	855, 897, 1226
MboI	GATC	3 cut(s)	853, 895, 1224
MboII	GAAGA	8 cut(s)	205, 377, 535, 538, 553, 590, 1247, 1283
MluCI	AATT	4 cut(s)	596, 884, 1129, 1280
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	8 cut(s)	147, 161, 339, 475, 637, 869, 1024, 1167
MroXI	GAANNNNTTC	2 cut(s)	227, 1146
MseI	TTAA	2 cut(s)	351, 585
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	3 cut(s)	405, 1001, 1256
MvaI	CCWGG	3 cut(s)	405, 1001, 1256
MvnI	CGCG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	4 cut(s)	185, 205, 390, 468
NdeII	GATC	3 cut(s)	853, 895, 1224
NlaIII	CATG	7 cut(s)	307, 390, 492, 642, 999, 1231, 1264
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	3 cut(s)	642, 999, 1264
NspV	TTCGAA	1 cut(s)	1150
PaeI	GCATGC	1 cut(s)	999
PciI	ACATGT	2 cut(s)	638, 1260
PcsI	WCGNNNNNNNCGW	1 cut(s)	1156
PdmI	GAANNNNTTC	2 cut(s)	227, 1146
PfeI	GAWTC	2 cut(s)	564, 1147
PfoI	TCCNGGA	1 cut(s)	1254
PkrI	GCNGC	4 cut(s)	38, 392, 461, 979
Ppu21I	YACGTR	1 cut(s)	729
PscI	ACATGT	2 cut(s)	638, 1260
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	403, 999, 1254
PspGI	CCWGG	3 cut(s)	403, 999, 1254
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	27, 1102
PstNI	CAGNNNCTG	1 cut(s)	977
RsaI	GTAC	3 cut(s)	731, 945, 1120
RsaNI	GTAC	3 cut(s)	730, 944, 1119
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	351, 585
SatI	GCNGC	4 cut(s)	37, 391, 460, 978
Sau3AI	GATC	3 cut(s)	853, 895, 1224
Sau96I	GGNCC	2 cut(s)	27, 1102
ScrFI	CCNGG	3 cut(s)	405, 1001, 1256
SfaNI	GCATC	3 cut(s)	171, 435, 774
SfcI	CTRYAG	1 cut(s)	1074
SfuI	TTCGAA	1 cut(s)	1150
SinI	GGWCC	2 cut(s)	27, 1102
SmiMI	CAYNNNNRTG	1 cut(s)	912
SpeI	ACTAGT	1 cut(s)	988
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	4 cut(s)	596, 884, 1129, 1280
SsiI	CCGC	3 cut(s)	167, 572, 912
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	4 cut(s)	104, 414, 456, 989
StyD4I	CCNGG	3 cut(s)	403, 999, 1254
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	4 cut(s)	144, 453, 671, 1197
TaiI	ACGT	2 cut(s)	615, 731
TaqI	TCGA	4 cut(s)	706, 801, 1150, 1265
TasI	AATT	4 cut(s)	596, 884, 1129, 1280
TfiI	GAWTC	2 cut(s)	564, 1147
Tru1I	TTAA	2 cut(s)	351, 585
Tru9I	TTAA	2 cut(s)	351, 585
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	4 cut(s)	36, 390, 459, 977
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	7 cut(s)	206, 320, 477, 545, 591, 677, 1155
TspGWI	ACGGA	3 cut(s)	49, 63, 1085
VpaK11BI	GGWCC	2 cut(s)	27, 1102
XapI	RAATTY	2 cut(s)	596, 1280
XceI	RCATGY	3 cut(s)	642, 999, 1264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XmnI	GAANNNNTTC	2 cut(s)	227, 1146
XspI	CTAG	4 cut(s)	104, 414, 456, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.