FvH4_3g32680

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016292
Physical Location & Seq
Forward (+)
27977543 .. 27978863
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32680.t1

Sequence Viewer

Length: 783 bp
ATGAAGCAGCAGCTACAACCTCTTCTCTCACTCCCATTGCTACTGATCCTCCTCTCCCACTGCACCGGAATCTCAGCTCAAGGCGCCCCAGCTGCGAGCCCAGATGCAGGTCCAATAGCCGACGCCCCGGCACCGCCGGGACCAACCAACGTCACCAAAATCCTTGAAAAATCCGGCAACTTCAACCTCCTCATCCGCCTGTTGAAAACCACCCAAGTTGACACCCAACTCTACAGCCAGCTAAACGACTCCTACAGCAAACTGACCATCTTGGCTCCAACTGACGCTGCCTTCTCGAAACTCAAATCAGGGTCTCTCAACTCCCTCAGTGAATCTCAGAAGGATCAGCTCTTGCAGTTCCATCTCATCCCAGATTTCCTCACCATCTCAAACTTCCAAACTCTCAGCAACCCGGTTCGGACCCAAGCCGGAGACCAGTTTGAGTACCCGCTAAACATCACCACATCTGGAAACTCAGTTAACATTACCACTGGTCTTGTCAACACTTCAATATCAGGCACTGTGTACACGGATAACCAACTGGCGGTTTATCAGGTCGACAGTGTGCTACAGCCTTATGGGATTTTTGCTCCCAAGCCTCTGCCTCCTGCTCCAGCACCGGCACCGGAAAAGGCAAAGCATAAAAAGAAGGCTTCGGACGATAGCCCAGTTGCCGCAGTGAAATCTGCTGCAGGGTCAGTAGTCTGTGATCTCTCCAGGAATGGGTTGGTCTCCATTGGAGTTGCTGTGGTTTTCGCAGCGGCAATGTTTTTGTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

261

Amino Acids

27.41

Weight (kDa)

7.73

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 60 - 192 8e-20 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB1I GGYRCC 3 cut(s) 83, 130, 622
AccI GTMKAC 1 cut(s) 558
AciI CCGC 6 cut(s) 134, 196, 449, 545, 675, 761
AclWI GGATC 2 cut(s) 40, 351
AcyI GRCGYC 2 cut(s) 84, 123
AfaI GTAC 2 cut(s) 446, 527
AfiI CCNNNNNNNGG 3 cut(s) 107, 544, 723
AgsI TTSAA 4 cut(s) 167, 184, 205, 510
AjnI CCWGG 1 cut(s) 716
AluBI AGCT 5 cut(s) 13, 77, 92, 241, 349
AluI AGCT 5 cut(s) 13, 77, 92, 241, 349
Alw26I GTCTC 3 cut(s) 318, 426, 736
AlwI GGATC 2 cut(s) 40, 351
AlwNI CAGNNNCTG 1 cut(s) 521
ApeKI GCWGC 6 cut(s) 7, 10, 92, 287, 689, 758
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 110, 140, 420
AsuC2I CCSGG 3 cut(s) 128, 138, 413
AsuHPI GGTGA 3 cut(s) 145, 373, 451
AvaII GGWCC 3 cut(s) 110, 140, 420
BanI GGYRCC 3 cut(s) 83, 130, 622
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 6 cut(s) 19, 22, 79, 274, 676, 770
BccI CCATC 3 cut(s) 275, 369, 392
BciT130I CCWGG 1 cut(s) 718
BcnI CCSGG 3 cut(s) 128, 138, 413
BcoDI GTCTC 3 cut(s) 318, 426, 736
BfmI CTRYAG 4 cut(s) 232, 253, 569, 690
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 8 cut(s) 8, 11, 93, 288, 675, 690, 759, 762
BlsI GCNGC 8 cut(s) 9, 12, 94, 289, 676, 691, 760, 763
Bme1390I CCNGG 4 cut(s) 128, 138, 413, 718
Bme18I GGWCC 3 cut(s) 110, 140, 420
BmgT120I GGNCC 3 cut(s) 110, 140, 420
BmiI GGNNCC 6 cut(s) 85, 132, 141, 276, 422, 624
BmrFI CCNGG 4 cut(s) 128, 138, 413, 718
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 662
BpmI CTGGAG 2 cut(s) 597, 700
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 3 cut(s) 128, 138, 413
BsaHI GRCGYC 2 cut(s) 84, 123
BsaI GGTCTC 3 cut(s) 318, 426, 736
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 65, 625
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 732, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 544, 723
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 4 cut(s) 436, 496, 546, 668
Bse3DI GCAATG 2 cut(s) 35, 771
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 192, 366
BseLI CCNNNNNNNGG 3 cut(s) 107, 544, 723
BseMI GCAATG 2 cut(s) 35, 771
BseMII CTCAG 5 cut(s) 87, 340, 350, 418, 489
BseNI ACTGG 4 cut(s) 436, 496, 546, 668
BseRI GAGGAG 2 cut(s) 41, 179
BseXI GCAGC 6 cut(s) 19, 22, 79, 274, 676, 770
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 46
BshNI GGYRCC 3 cut(s) 83, 130, 622
BsiSI CCGG 8 cut(s) 66, 128, 137, 174, 413, 429, 620, 626
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 107, 544, 723
BsmAI GTCTC 3 cut(s) 318, 426, 736
BsmFI GGGAC 1 cut(s) 153
Bso31I GGTCTC 3 cut(s) 318, 426, 736
Bsp1286I GDGCHC 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 3 cut(s) 45, 343, 709
BspACI CCGC 6 cut(s) 134, 196, 449, 545, 675, 761
BspCNI CTCAG 5 cut(s) 86, 339, 349, 417, 488
BspLI GGNNCC 6 cut(s) 85, 132, 141, 276, 422, 624
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 40, 351
BspT107I GGYRCC 3 cut(s) 83, 130, 622
BspTNI GGTCTC 3 cut(s) 318, 426, 736
BsrDI GCAATG 2 cut(s) 35, 771
BsrFI RCCGGY 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 4 cut(s) 436, 496, 546, 668
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 45, 343, 709
BssNI GRCGYC 2 cut(s) 84, 123
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 2 cut(s) 523, 563
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 2 cut(s) 84, 123
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 97, 239
BstDEI CTNAG 5 cut(s) 73, 326, 336, 404, 475
BstF5I GGATG 2 cut(s) 192, 366
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 3 cut(s) 48, 346, 712
BstMAI GTCTC 3 cut(s) 318, 426, 736
BstMBI GATC 3 cut(s) 45, 343, 709
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstNI CCWGG 1 cut(s) 718
BstSCI CCNGG 4 cut(s) 126, 136, 411, 716
BstSFI CTRYAG 4 cut(s) 232, 253, 569, 690
BstV1I GCAGC 6 cut(s) 19, 22, 79, 274, 676, 770
BtsCI GGATG 2 cut(s) 192, 366
BtsI GCAGTG 2 cut(s) 58, 684
BtsIMutI CAGTG 6 cut(s) 58, 334, 489, 519, 568, 684
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 97, 239
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 3 cut(s) 110, 140, 420
CseI GACGC 2 cut(s) 131, 293
Csp6I GTAC 2 cut(s) 445, 526
CspCI CAANNNNNGTGG 4 cut(s) 199, 234, 478, 513
CviQI GTAC 2 cut(s) 445, 526
DdeI CTNAG 5 cut(s) 73, 326, 336, 404, 475
DinI GGCGCC 1 cut(s) 85
DpnI GATC 3 cut(s) 47, 345, 711
DpnII GATC 3 cut(s) 45, 343, 709
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 3 cut(s) 318, 426, 736
Eco47I GGWCC 3 cut(s) 110, 140, 420
EcoRII CCWGG 1 cut(s) 716
EcoT38I GRGCYC 1 cut(s) 101
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaiI YATR 2 cut(s) 579, 642
FaqI GGGAC 1 cut(s) 153
FauI CCCGC 1 cut(s) 456
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 8, 11, 93, 288, 675, 690, 759, 762
FokI GGATG 2 cut(s) 179, 353
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 8 cut(s) 8, 11, 93, 288, 675, 690, 759, 762
GlaI GCGC 1 cut(s) 85
GluI GCNGC 8 cut(s) 8, 11, 93, 288, 675, 690, 759, 762
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 597, 700
HaeII RGCGCY 1 cut(s) 87
HapII CCGG 8 cut(s) 66, 128, 137, 174, 413, 429, 620, 626
HgaI GACGC 2 cut(s) 131, 293
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 2 cut(s) 84, 123
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 4 cut(s) 220, 481, 502, 559
HindII GTYRAC 4 cut(s) 220, 481, 502, 559
HinfI GANTC 3 cut(s) 69, 248, 332
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 8 cut(s) 66, 128, 137, 174, 413, 429, 620, 626
HphI GGTGA 3 cut(s) 145, 373, 451
Hpy166II GTNNAC 6 cut(s) 220, 481, 502, 526, 528, 559
Hpy188I TCNGA 3 cut(s) 339, 420, 658
Hpy188III TCNNGA 2 cut(s) 295, 468
Hpy8I GTNNAC 6 cut(s) 220, 481, 502, 526, 528, 559
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 301, 334, 643
HpyCH4III ACNGT 2 cut(s) 523, 563
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 63, 107, 355, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpyF3I CTNAG 5 cut(s) 73, 326, 336, 404, 475
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 84, 123
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 45, 343, 709
LmnI GCTCC 3 cut(s) 280, 595, 616
Lsp1109I GCAGC 6 cut(s) 19, 22, 79, 274, 676, 770
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 151, 774
MalI GATC 3 cut(s) 47, 345, 711
MboI GATC 3 cut(s) 45, 343, 709
MboII GAAGA 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 101
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 9 cut(s) 30, 59, 62, 197, 200, 335, 389, 609, 615
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 92, 761
MspI CCGG 8 cut(s) 66, 128, 137, 174, 413, 429, 620, 626
MspR9I CCNGG 4 cut(s) 128, 138, 413, 718
MvaI CCWGG 1 cut(s) 718
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 3 cut(s) 128, 138, 413
NdeII GATC 3 cut(s) 45, 343, 709
NlaIV GGNNCC 6 cut(s) 85, 132, 141, 276, 422, 624
NmuCI GTSAC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 69, 332
PfoI TCCNGGA 1 cut(s) 716
PkrI GCNGC 8 cut(s) 9, 12, 94, 289, 676, 691, 760, 763
PleI GAGTC 1 cut(s) 242
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 6 cut(s) 85, 132, 141, 276, 422, 624
PspPI GGNCC 3 cut(s) 110, 140, 420
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 446, 527
RsaNI GTAC 2 cut(s) 445, 526
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 8 cut(s) 8, 11, 93, 288, 675, 690, 759, 762
Sau3AI GATC 3 cut(s) 45, 343, 709
Sau96I GGNCC 3 cut(s) 110, 140, 420
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 4 cut(s) 128, 138, 413, 718
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 4 cut(s) 232, 253, 569, 690
SfoI GGCGCC 1 cut(s) 85
SinI GGWCC 3 cut(s) 110, 140, 420
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SsiI CCGC 6 cut(s) 134, 196, 449, 545, 675, 761
SspDI GGCGCC 1 cut(s) 83
StyD4I CCNGG 4 cut(s) 126, 136, 411, 716
TaaI ACNGT 2 cut(s) 523, 563
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 296, 558
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 677, 764
TfiI GAWTC 2 cut(s) 69, 332
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 6 cut(s) 65, 334, 496, 526, 568, 684
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 6 cut(s) 7, 10, 92, 287, 689, 758
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 6 cut(s) 65, 334, 496, 526, 568, 684
VpaK11BI GGWCC 3 cut(s) 110, 140, 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.