MD03G1114700.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016292
Physical Location & Seq
Forward (+)
10015241 .. 10016083
843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1114700.v1.1.491

Sequence Viewer

Length: 843 bp
ATGCAACAGTATCAGCCTCTCTTCTCACTCATACTCCTACTCATCTTCATTTCCCATTCCACCAAAACCCTAGCCCAAGGCCCTGCTGCTGCCCCAGCAATAACCAGCCCTGCGGCCGTTCCGTTACCACCAGCAAACGCCCCGTCACTCACCAGCCCGGTGGCCGTTCCGGCACCACCAGCCAACGCCCCAGCGCCAACAGGCCCAACCAACATCACCAAAATCCTTGAAAAGGCAGGAGGCTTCAACATCTTAATCCGCCTCCTAAAAAGCACCCAAATCGACAAACAGCTCTACAGCCAGCTCAACAACACCAACAGTGAATTGACACTTTTAGCCCCTTCCGACGGCGCCTTCTCAAACCTCGGATCCCTGAACTCCCTCAGCGATGAACAAAAAACCCAGCTCTTGCAATTCCATCTAATCCCAGATTTCATCACTACCCAAAAGTTCCAAACTATAAGCAATCCGGTGAGAACCCAAGCTGGAGACGGCTTCGAGTACCCGCTAAACATCACCACATCAGGCAATGCAGTGAACATTTCAACTGGCCTTGTCAATACTTCAATCTCAGGCACTGTCTATTCTGATGGTCAGTTGGCTATTTACCAAGTTGACAGTGTGCTCCAACCTTACGGTGTTTTTGCTCCCAAGCCTCCCCCACCAACACCGGCACCAGCACCAGCTCTTGCGGAAGAGAAGCCTAAGAAGAAGCCATCTCATCAAGTCCCAGTTGCTGAAGTGAAGTCTGGTGCTGTGCCTACACTGAATATCCCCAAGATTAATGGCATTGTCTCTATTGGAGTTACATTATTAGCTGCTGCAGCTATGAACTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

281

Amino Acids

29.28

Weight (kDa)

8.73

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 81 - 211 1.9e-17 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 172, 350, 673
AciI CCGC 4 cut(s) 113, 259, 506, 692
AclWI GGATC 2 cut(s) 363, 376
AcoI YGGCCR 2 cut(s) 114, 162
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 232, 347
AgsI TTSAA 4 cut(s) 230, 247, 546, 567
AluBI AGCT 7 cut(s) 292, 304, 406, 485, 686, 818, 827
AluI AGCT 7 cut(s) 292, 304, 406, 485, 686, 818, 827
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 2 cut(s) 483, 799
AlwI GGATC 2 cut(s) 363, 376
AlwNI CAGNNNCTG 2 cut(s) 578, 737
AoxI GGCC 5 cut(s) 79, 114, 162, 202, 550
ApeKI GCWGC 5 cut(s) 86, 89, 818, 821, 824
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AseI ATTAAT 1 cut(s) 783
AspLEI GCGC 2 cut(s) 196, 353
AspS9I GGNCC 2 cut(s) 80, 203
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 142, 208, 484, 508
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 3 cut(s) 172, 350, 673
Bbv12I GWGCWC 1 cut(s) 627
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 5 cut(s) 73, 76, 805, 808, 836
BccI CCATC 3 cut(s) 426, 584, 724
BceAI ACGGC 4 cut(s) 101, 149, 364, 508
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 483, 799
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 295, 822
BfoI RGCGCY 2 cut(s) 197, 354
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 6 cut(s) 87, 90, 114, 819, 822, 825
BlsI GCNGC 6 cut(s) 88, 91, 115, 820, 823, 826
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 80, 203
BmiI GGNNCC 4 cut(s) 174, 352, 370, 675
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 725
BmuI ACTGGG 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 76, 364
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 347
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 2 cut(s) 553, 731
Bse3DI GCAATG 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 76, 364
BseLI CCNNNNNNNGG 2 cut(s) 232, 347
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 2 cut(s) 397, 585
BseNI ACTGG 2 cut(s) 553, 731
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 5 cut(s) 73, 76, 805, 808, 836
BseYI CCCAGC 3 cut(s) 94, 190, 402
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 5 cut(s) 81, 116, 164, 204, 552
BshNI GGYRCC 3 cut(s) 172, 350, 673
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 4 cut(s) 158, 170, 470, 671
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 2 cut(s) 232, 347
BsmAI GTCTC 2 cut(s) 483, 799
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 5 cut(s) 81, 116, 164, 204, 552
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 1 cut(s) 368
BspACI CCGC 4 cut(s) 113, 259, 506, 692
BspANI GGCC 5 cut(s) 81, 116, 164, 204, 552
BspCNI CTCAG 2 cut(s) 396, 584
BspLI GGNNCC 4 cut(s) 174, 352, 370, 675
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 2 cut(s) 363, 376
BspT107I GGYRCC 3 cut(s) 172, 350, 673
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 670
BsrI ACTGG 2 cut(s) 553, 731
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 76, 364
BssMI GATC 1 cut(s) 368
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 5 cut(s) 9, 320, 580, 620, 638
Bst6I CTCTTC 2 cut(s) 26, 690
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 3 cut(s) 383, 571, 705
BstENI CCTNNNNNAGG 1 cut(s) 230
BstH2I RGCGCY 2 cut(s) 197, 354
BstHHI GCGC 2 cut(s) 196, 353
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 2 cut(s) 483, 799
BstMBI GATC 1 cut(s) 368
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 95, 170, 179, 824
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 2 cut(s) 295, 822
BstV1I GCAGC 5 cut(s) 73, 76, 805, 808, 836
BstX2I RGATCY 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 368
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 5 cut(s) 81, 116, 164, 204, 552
BtgZI GCGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 5 cut(s) 325, 540, 576, 625, 764
Cac8I GCNNGC 1 cut(s) 302
CaiI CAGNNNCTG 2 cut(s) 578, 737
CfoI GCGC 2 cut(s) 196, 353
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 80, 203
Csp6I GTAC 1 cut(s) 502
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 383, 571, 705
DinI GGCGCC 1 cut(s) 352
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 114, 162
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 26, 690
EarI CTCTTC 2 cut(s) 26, 690
EciI GGCGGA 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 76
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 483
FaiI YATR 3 cut(s) 32, 461, 830
FaqI GGGAC 1 cut(s) 713
FauI CCCGC 1 cut(s) 513
Fnu4HI GCNGC 6 cut(s) 87, 90, 114, 819, 822, 825
Fsp4HI GCNGC 6 cut(s) 87, 90, 114, 819, 822, 825
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 195, 352
GluI GCNGC 6 cut(s) 87, 90, 114, 819, 822, 825
GsaI CCCAGC 3 cut(s) 98, 194, 406
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 2 cut(s) 197, 354
HaeIII GGCC 5 cut(s) 81, 116, 164, 204, 552
HapII CCGG 4 cut(s) 158, 170, 470, 671
HhaI GCGC 2 cut(s) 196, 353
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 2 cut(s) 194, 351
HinP1I GCGC 2 cut(s) 194, 351
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HpaII CCGG 4 cut(s) 158, 170, 470, 671
HphI GGTGA 4 cut(s) 142, 208, 484, 508
Hpy166II GTNNAC 2 cut(s) 538, 616
Hpy188I TCNGA 3 cut(s) 346, 368, 589
Hpy8I GTNNAC 2 cut(s) 538, 616
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 351, 364
HpyCH4III ACNGT 5 cut(s) 9, 320, 580, 620, 638
HpyCH4V TGCA 4 cut(s) 4, 412, 533, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 170, 179, 824
HpyF3I CTNAG 3 cut(s) 383, 571, 705
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 2 cut(s) 194, 351
KasI GGCGCC 1 cut(s) 350
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 2 cut(s) 630, 652
Lsp1109I GCAGC 5 cut(s) 73, 76, 805, 808, 836
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 123, 144, 805
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 4 cut(s) 13, 37, 707, 721
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 2 cut(s) 323, 413
Mly113I GGCGCC 1 cut(s) 351
MmeI TCCRAC 2 cut(s) 369, 652
MnlI CCTC 6 cut(s) 27, 233, 272, 374, 392, 666
MseI TTAA 2 cut(s) 254, 783
MspI CCGG 4 cut(s) 158, 170, 470, 671
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 95, 170, 179, 824
NarI GGCGCC 1 cut(s) 351
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 368
NlaIV GGNNCC 4 cut(s) 174, 352, 370, 675
NmuCI GTSAC 1 cut(s) 144
PkrI GCNGC 6 cut(s) 88, 91, 115, 820, 823, 826
PluTI GGCGCC 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 783
PspFI CCCAGC 3 cut(s) 94, 190, 402
PspN4I GGNNCC 4 cut(s) 174, 352, 370, 675
PspPI GGNCC 2 cut(s) 80, 203
PstI CTGCAG 1 cut(s) 826
PstNI CAGNNNCTG 2 cut(s) 578, 737
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 254, 783
SatI GCNGC 6 cut(s) 87, 90, 114, 819, 822, 825
Sau3AI GATC 1 cut(s) 368
Sau96I GGNCC 2 cut(s) 80, 203
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 627
SetI ASST 9 cut(s) 294, 306, 366, 408, 487, 634, 688, 820, 829
SfcI CTRYAG 2 cut(s) 295, 822
SfoI GGCGCC 1 cut(s) 352
Sse9I AATT 2 cut(s) 323, 413
SsiI CCGC 4 cut(s) 113, 259, 506, 692
SspDI GGCGCC 1 cut(s) 350
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 5 cut(s) 9, 320, 580, 620, 638
TaqI TCGA 2 cut(s) 282, 498
TasI AATT 2 cut(s) 323, 413
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 254, 783
Tru9I TTAA 2 cut(s) 254, 783
TscAI CASTG 5 cut(s) 325, 540, 583, 625, 771
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 5 cut(s) 86, 89, 818, 821, 824
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 3 cut(s) 37, 405, 424
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 5 cut(s) 325, 540, 583, 625, 771
VspI ATTAAT 1 cut(s) 783
XagI CCTNNNNNAGG 1 cut(s) 230
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.