Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016292

Physical Location & Seq

Genomic Coordinates Reverse (-)

6914285 .. 6915115

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATGAATCAGCCTCTCTTCTCACTTACACTCCTGCTCATCTCCCTCTCCCAATGCACCAAAATCTTAGCCCAAGCCCCTGCTGCTGCCCCAGCTGCCCCAGCTGCCCCAGTTGCCCCGGCTGCCCCTGCTGCCCCATCAATTACCGGGCCGGCAGTGCCATCACCACCAGCCGATGCCCCTGCATCACTAGGCCCAACCAACATCACCAAAATCCTTGAAAAAGCAGGTGGCTTCAACATCTTTATCCGCCTTTTGAAAAGCACCCAAGTTGATAACCAGCTCTACAGCCAACTCAACAACTCAAACAGTGAACTCACAATTTTAGCGCCAACCGATAATGGCTTCTCACAGCTCAAGACAGGATCACTCAACTCTTTGAGTGATGAGCAAAAAGTCCAGCTGTTACAATTCCATCTGATCCCAGATTTTCTCACAGTCCAAAACTTCCAAACACTCAGCAACCCAGTGAGAACCCAAGCTGGAGATGGATTTGAGTACCCACTAAACATCACCACATCAGGCAGGGCAGTCAACATAACAACAGGTCTTGTCAACACCTCCATTTCAGGCACTGTCTACTCTGATGGCCAATTGGCTATTTACCAAGTTGACAGTGTGCTCAAGCCTTATGGTGTTTTTGCTCCCAAGCCTCAGCCACCTTCACCGGCACCGGCTCCTGCGCAAGAGAAGCCTAAGAAGACGTCATCTGATGACAGTCCTGTTTCTCAAGTGAAGTCTGGTGCTGTGCCTACTCTGATCTCCAAACTTAATGGCGTTGTTTCCATTGCAGTTTCTGTGGTTGCTGCTGCAGCGTTAAGCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

277

Amino Acids

28.6

Weight (kDa)

7.78

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32680
malus_domestica	MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica	Prupe.6G099400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059731
rosa_laevigata	RLG00000035325
rosa_multiflora	Rmu_sc0000660.1_g000030
rosa_roxburghii	Rroxscaffold_1G00020870
rosa_rugosa	Rorug05G0324800
rosa_samantha	Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana	Rw5G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	707
Acc16I	TGCGCA	1 cut(s)	684
Acc36I	ACCTGC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	373, 415
AcoI	YGGCCR	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	1 cut(s)	500
AgsI	TTSAA	3 cut(s)	221, 238, 259
AluBI	AGCT	7 cut(s)	95, 104, 283, 355, 403, 482, 822
AluI	AGCT	7 cut(s)	95, 104, 283, 355, 403, 482, 822
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	373, 415
AlwNI	CAGNNNCTG	2 cut(s)	575, 797
AoxI	GGCC	3 cut(s)	149, 193, 589
ApeKI	GCWGC	9 cut(s)	83, 86, 95, 104, 122, 131, 806, 809, 812
AspLEI	GCGC	2 cut(s)	331, 685
AspS9I	GGNCC	2 cut(s)	149, 194
AsuC2I	CCSGG	2 cut(s)	119, 148
AsuHPI	GGTGA	4 cut(s)	156, 199, 505, 657
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	9 cut(s)	70, 73, 82, 91, 109, 118, 793, 796, 824
BccI	CCATC	5 cut(s)	145, 169, 423, 482, 581
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BcnI	CCSGG	2 cut(s)	119, 148
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	286, 810
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	9 cut(s)	84, 87, 96, 105, 123, 132, 807, 810, 813
BlsI	GCNGC	9 cut(s)	85, 88, 97, 106, 124, 133, 808, 811, 814
Bme1390I	CCNGG	2 cut(s)	119, 148
BmgT120I	GGNCC	2 cut(s)	149, 194
BmiI	GGNNCC	2 cut(s)	672, 678
BmrFI	CCNGG	2 cut(s)	119, 148
BmrI	ACTGGG	2 cut(s)	104, 461
BmsI	GCATC	2 cut(s)	166, 194
BmuI	ACTGGG	2 cut(s)	104, 461
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	3 cut(s)	341, 608, 714
BpuMI	CCSGG	2 cut(s)	119, 148
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	3 cut(s)	151, 667, 673
Bse1I	ACTGG	2 cut(s)	110, 467
Bse3DI	GCAATG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	472, 668
BseNI	ACTGG	2 cut(s)	110, 467
BseXI	GCAGC	9 cut(s)	70, 73, 82, 91, 109, 118, 793, 796, 824
BseYI	CCCAGC	2 cut(s)	91, 100
BshFI	GGCC	3 cut(s)	151, 195, 591
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	5 cut(s)	119, 147, 152, 668, 674
BsnI	GGCC	3 cut(s)	151, 195, 591
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	365, 420, 759
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	151, 195, 591
BspCNI	CTCAG	2 cut(s)	471, 667
BspLI	GGNNCC	2 cut(s)	672, 678
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	373, 415
BspT107I	GGYRCC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	3 cut(s)	151, 667, 673
BsrI	ACTGG	2 cut(s)	110, 467
BssAI	RCCGGY	3 cut(s)	151, 667, 673
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	365, 420, 759
BssNI	GRCGYC	1 cut(s)	704
Bst4CI	ACNGT	5 cut(s)	311, 439, 577, 617, 719
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	67, 458, 654, 696
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	331, 685
BstKTI	GATC	3 cut(s)	368, 423, 762
BstMBI	GATC	3 cut(s)	365, 420, 759
BstSCI	CCNGG	2 cut(s)	117, 146
BstSFI	CTRYAG	2 cut(s)	286, 810
BstV1I	GCAGC	9 cut(s)	70, 73, 82, 91, 109, 118, 793, 796, 824
BstV2I	GAAGAC	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	151, 195, 591
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	5 cut(s)	162, 316, 474, 573, 622
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	2 cut(s)	575, 797
CfoI	GCGC	2 cut(s)	331, 685
Cfr10I	RCCGGY	3 cut(s)	151, 667, 673
Cfr13I	GGNCC	2 cut(s)	149, 194
Csp6I	GTAC	1 cut(s)	499
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	67, 458, 654, 696
DpnI	GATC	3 cut(s)	367, 422, 761
DpnII	GATC	3 cut(s)	365, 420, 759
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	239
FaiI	YATR	2 cut(s)	539, 633
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	9 cut(s)	84, 87, 96, 105, 123, 132, 807, 810, 813
Fsp4HI	GCNGC	9 cut(s)	84, 87, 96, 105, 123, 132, 807, 810, 813
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	684
GlaI	GCGC	2 cut(s)	330, 684
GluI	GCNGC	9 cut(s)	84, 87, 96, 105, 123, 132, 807, 810, 813
GsaI	CCCAGC	2 cut(s)	95, 104
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	151, 195, 591
HapII	CCGG	5 cut(s)	119, 147, 152, 668, 674
HhaI	GCGC	2 cut(s)	331, 685
Hin1I	GRCGYC	1 cut(s)	704
Hin6I	GCGC	2 cut(s)	329, 683
HinP1I	GCGC	2 cut(s)	329, 683
HincII	GTYRAC	3 cut(s)	535, 556, 613
HindII	GTYRAC	3 cut(s)	535, 556, 613
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	5 cut(s)	119, 147, 152, 668, 674
HphI	GGTGA	4 cut(s)	156, 199, 505, 657
Hpy166II	GTNNAC	5 cut(s)	314, 535, 556, 580, 613
Hpy188I	TCNGA	4 cut(s)	420, 586, 712, 759
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	5 cut(s)	314, 535, 556, 580, 613
HpyAV	CCTTC	1 cut(s)	672
HpyCH4III	ACNGT	5 cut(s)	311, 439, 577, 617, 719
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	4 cut(s)	57, 185, 791, 812
HpyF3I	CTNAG	4 cut(s)	67, 458, 654, 696
HpySE526I	ACGT	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	704
HspAI	GCGC	2 cut(s)	329, 683
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	365, 420, 759
LmnI	GCTCC	2 cut(s)	649, 682
Lsp1109I	GCAGC	9 cut(s)	70, 73, 82, 91, 109, 118, 793, 796, 824
LweI	GCATC	2 cut(s)	166, 194
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	3 cut(s)	367, 422, 761
MboI	GATC	3 cut(s)	365, 420, 759
MboII	GAAGA	2 cut(s)	10, 712
MfeI	CAATTG	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	4 cut(s)	141, 321, 410, 593
MluNI	TGGCCA	1 cut(s)	591
MnlI	CCTC	4 cut(s)	24, 56, 571, 663
Mox20I	TGGCCA	1 cut(s)	591
MroNI	GCCGGC	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	771, 818
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	3 cut(s)	95, 104, 403
MspI	CCGG	5 cut(s)	119, 147, 152, 668, 674
MspR9I	CCNGG	2 cut(s)	119, 148
MunI	CAATTG	1 cut(s)	593
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	119, 148
NdeII	GATC	3 cut(s)	365, 420, 759
NgoMIV	GCCGGC	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	672, 678
NsbI	TGCGCA	1 cut(s)	684
PaqCI	CACCTGC	1 cut(s)	218
PdiI	GCCGGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	9 cut(s)	85, 88, 97, 106, 124, 133, 808, 811, 814
PspFI	CCCAGC	2 cut(s)	91, 100
PspN4I	GGNNCC	2 cut(s)	672, 678
PspPI	GGNCC	2 cut(s)	149, 194
PstI	CTGCAG	1 cut(s)	814
PstNI	CAGNNNCTG	2 cut(s)	575, 797
PvuII	CAGCTG	3 cut(s)	95, 104, 403
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	771, 818
SatI	GCNGC	9 cut(s)	84, 87, 96, 105, 123, 132, 807, 810, 813
Sau3AI	GATC	3 cut(s)	365, 420, 759
Sau96I	GGNCC	2 cut(s)	149, 194
ScrFI	CCNGG	2 cut(s)	119, 148
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	166, 194
SfcI	CTRYAG	2 cut(s)	286, 810
SmlI	CTYRAG	3 cut(s)	356, 623, 729
SmoI	CTYRAG	3 cut(s)	356, 623, 729
Sse9I	AATT	4 cut(s)	141, 321, 410, 593
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	117, 146
TaaI	ACNGT	5 cut(s)	311, 439, 577, 617, 719
TaiI	ACGT	1 cut(s)	707
TasI	AATT	4 cut(s)	141, 321, 410, 593
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	771, 818
Tru9I	TTAA	2 cut(s)	771, 818
TscAI	CASTG	5 cut(s)	162, 316, 474, 580, 622
TseI	GCWGC	9 cut(s)	83, 86, 95, 104, 122, 131, 806, 809, 812
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	5 cut(s)	162, 316, 474, 580, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.