MD11G1133200.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016292
Physical Location & Seq
Reverse (-)
12199006 .. 12199800
795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1133200.v1.1.491

Sequence Viewer

Length: 795 bp
ATGAAGCAACAGTATCAGCCTCTCTTCTCACTCACAGTCCTAGTCATCTTCCTCTCCCATTGCACCAAAACCCTAGGCCAAGGCCCTGCTGCTGCCCCGGCAACCACCAGCCCGGCGGCTGTTCCCGCACCACCAGCCGATGCCCCAGCACCACCAGGCCCAACCAACGTCACCAAAATCCTAGAAAAGGCAGGAGGCTTCAACATCTTAATCCGCCTTCTAAAAAGCACCCAAATCGATAGCCAGCTCTATAGCCAGCTCAACAACTCCAACAGTGAGCTGACACTTTTAGCCCCGCCCGACAGCGCCTTCTCAAACCTCAAAACTGGCTCCCTCAACTCTCTCACTGATTCACAAAAAGTCCAGCTCTTGCAATACCATCTCATCCCAGATTTTCTCACGACCCAAAACTTCCAAACTCTGAGCAATCCGGTGAATACCCAAGCCGGAGACGGATTCGAGTACCCGCTAAATATCACCACATCAGGCAATGCTGTGAACATTTCAACTGGCCTTGTCAACACTTCAATCTCAGGCACTGTCTACTCTGATGGTCAGTTGGCTATTTACCAAGTTAACAGTGTGCTCCAACCCTACGGTATTTTTGCTCCCAAGACTCCGCCACCGTCACCGGCACCCTCTCCTGCGGAAGAGAAGCGCAAGAAGAAGTCTTCATCTCATGAACCTGTTGCTGAAGTGAAGTCTGGTGCTGTGCCTACACTAAATATCCCCAAGATTAATGGCATTGTCTCTATTGGAGTTGCATTAGCTGCTGCAGCTATAAGCTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

265

Amino Acids

27.66

Weight (kDa)

8.57

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 66 - 198 1.6e-18 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 1 cut(s) 543
AciI CCGC 7 cut(s) 116, 126, 214, 296, 467, 620, 647
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 3 cut(s) 202, 507, 528
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 7 cut(s) 247, 259, 280, 367, 770, 779, 786
AluI AGCT 7 cut(s) 247, 259, 280, 367, 770, 779, 786
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 444, 754
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 4 cut(s) 76, 82, 157, 511
ApeKI GCWGC 5 cut(s) 89, 92, 770, 773, 776
AseI ATTAAT 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 2 cut(s) 308, 660
AspS9I GGNCC 2 cut(s) 83, 158
AsuC2I CCSGG 2 cut(s) 98, 113
AsuHPI GGTGA 4 cut(s) 163, 445, 469, 621
AvrII CCTAGG 1 cut(s) 73
BanI GGYRCC 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 5 cut(s) 76, 79, 757, 760, 788
BccI CCATC 2 cut(s) 387, 545
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 2 cut(s) 98, 113
BcoDI GTCTC 2 cut(s) 444, 754
BfaI CTAG 3 cut(s) 41, 74, 182
BfmI CTRYAG 2 cut(s) 250, 774
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 6 cut(s) 90, 93, 117, 771, 774, 777
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 6 cut(s) 91, 94, 118, 772, 775, 778
Bme1390I CCNGG 3 cut(s) 98, 113, 156
BmgT120I GGNCC 2 cut(s) 83, 158
BmiI GGNNCC 2 cut(s) 331, 636
BmrFI CCNGG 3 cut(s) 98, 113, 156
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 98, 113
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 73, 79, 96
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 2 cut(s) 331, 514
Bse3DI GCAATG 2 cut(s) 58, 496
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 73, 79, 96
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 2 cut(s) 58, 496
BseMII CTCAG 2 cut(s) 413, 546
BseNI ACTGG 2 cut(s) 331, 514
BseXI GCAGC 5 cut(s) 76, 79, 757, 760, 788
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 4 cut(s) 78, 84, 159, 513
BshNI GGYRCC 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 5 cut(s) 98, 113, 431, 447, 632
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 444, 754
BsmBI CGTCTC 1 cut(s) 444
BsnI GGCC 4 cut(s) 78, 84, 159, 513
Bsp1286I GDGCHC 1 cut(s) 588
BspACI CCGC 7 cut(s) 116, 126, 214, 296, 467, 620, 647
BspANI GGCC 4 cut(s) 78, 84, 159, 513
BspCNI CTCAG 2 cut(s) 414, 545
BspDI ATCGAT 1 cut(s) 237
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 331, 636
BspMAI CTGCAG 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 2 cut(s) 58, 496
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 2 cut(s) 331, 514
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 3 cut(s) 73, 79, 96
BssT1I CCWWGG 2 cut(s) 73, 79
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 7 cut(s) 12, 37, 275, 541, 581, 599, 627
Bst6I CTCTTC 2 cut(s) 29, 645
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 245, 257
BstDEI CTNAG 2 cut(s) 422, 532
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 308, 660
BstMAI GTCTC 2 cut(s) 444, 754
BstMWI GCNNNNNNNGC 5 cut(s) 98, 125, 134, 770, 776
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 3 cut(s) 96, 111, 154
BstSFI CTRYAG 2 cut(s) 250, 774
BstV1I GCAGC 5 cut(s) 76, 79, 757, 760, 788
BstV2I GAAGAC 1 cut(s) 663
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 4 cut(s) 78, 84, 159, 513
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 4 cut(s) 280, 345, 537, 586
Cac8I GCNNGC 2 cut(s) 245, 257
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 1 cut(s) 679
CfoI GCGC 2 cut(s) 308, 660
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 2 cut(s) 83, 158
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 463
CviAII CATG 1 cut(s) 680
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 422, 532
Eam1104I CTCTTC 2 cut(s) 29, 645
EarI CTCTTC 2 cut(s) 29, 645
EciI GGCGGA 2 cut(s) 203, 609
Eco130I CCWWGG 2 cut(s) 73, 79
Eco57I CTGAAG 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 73, 79
ErhI CCWWGG 2 cut(s) 73, 79
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 1 cut(s) 683
FaiI YATR 3 cut(s) 252, 681, 782
FatI CATG 1 cut(s) 679
FauI CCCGC 3 cut(s) 133, 303, 474
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 6 cut(s) 90, 93, 117, 771, 774, 777
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 6 cut(s) 90, 93, 117, 771, 774, 777
FspBI CTAG 3 cut(s) 41, 74, 182
GlaI GCGC 2 cut(s) 307, 659
GluI GCNGC 6 cut(s) 90, 93, 117, 771, 774, 777
GsaI CCCAGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 4 cut(s) 78, 84, 159, 513
HapII CCGG 5 cut(s) 98, 113, 431, 447, 632
HhaI GCGC 2 cut(s) 308, 660
Hin1II CATG 1 cut(s) 683
Hin6I GCGC 2 cut(s) 306, 658
HinP1I GCGC 2 cut(s) 306, 658
HincII GTYRAC 2 cut(s) 520, 577
HindII GTYRAC 2 cut(s) 520, 577
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 3 cut(s) 350, 456, 616
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 5 cut(s) 98, 113, 431, 447, 632
HphI GGTGA 4 cut(s) 163, 445, 469, 621
Hpy166II GTNNAC 4 cut(s) 499, 520, 544, 577
Hpy188I TCNGA 2 cut(s) 423, 550
Hpy188III TCNNGA 2 cut(s) 400, 680
Hpy8I GTNNAC 4 cut(s) 499, 520, 544, 577
HpyAV CCTTC 2 cut(s) 227, 319
HpyCH4III ACNGT 7 cut(s) 12, 37, 275, 541, 581, 599, 627
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 4 cut(s) 63, 373, 764, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 125, 134, 770, 776
HpyF3I CTNAG 2 cut(s) 422, 532
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 683
HspAI GCGC 2 cut(s) 306, 658
KspAI GTTAAC 1 cut(s) 577
LmnI GCTCC 3 cut(s) 335, 591, 613
Lsp1109I GCAGC 5 cut(s) 76, 79, 757, 760, 788
LweI GCATC 1 cut(s) 130
MaeI CTAG 3 cut(s) 41, 74, 182
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 169, 627
MboII GAAGA 5 cut(s) 16, 40, 662, 663, 676
MhlI GDGCHC 1 cut(s) 588
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 2 cut(s) 294, 613
MnlI CCTC 6 cut(s) 30, 62, 188, 329, 344, 649
MseI TTAA 3 cut(s) 209, 576, 738
MspI CCGG 5 cut(s) 98, 113, 431, 447, 632
MspR9I CCNGG 3 cut(s) 98, 113, 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 5 cut(s) 98, 125, 134, 770, 776
NciI CCSGG 2 cut(s) 98, 113
NlaIII CATG 1 cut(s) 683
NlaIV GGNNCC 2 cut(s) 331, 636
NmuCI GTSAC 2 cut(s) 169, 627
PagI TCATGA 1 cut(s) 679
PfeI GAWTC 2 cut(s) 350, 456
PkrI GCNGC 6 cut(s) 91, 94, 118, 772, 775, 778
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 331, 636
PspPI GGNCC 2 cut(s) 83, 158
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 209, 576, 738
SatI GCNGC 6 cut(s) 90, 93, 117, 771, 774, 777
Sau96I GGNCC 2 cut(s) 83, 158
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 3 cut(s) 98, 113, 156
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 2 cut(s) 250, 774
SsiI CCGC 7 cut(s) 116, 126, 214, 296, 467, 620, 647
SspMI CTAG 3 cut(s) 41, 74, 182
StyD4I CCNGG 3 cut(s) 96, 111, 154
StyI CCWWGG 2 cut(s) 73, 79
TaaI ACNGT 7 cut(s) 12, 37, 275, 541, 581, 599, 627
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 237, 459
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 350, 456
Tru1I TTAA 3 cut(s) 209, 576, 738
Tru9I TTAA 3 cut(s) 209, 576, 738
TscAI CASTG 4 cut(s) 280, 352, 544, 586
TseFI GTSAC 2 cut(s) 169, 627
TseI GCWGC 5 cut(s) 89, 92, 770, 773, 776
Tsp45I GTSAC 2 cut(s) 169, 627
TspDTI ATGAA 3 cut(s) 17, 663, 696
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 4 cut(s) 280, 352, 544, 586
VspI ATTAAT 1 cut(s) 738
XagI CCTNNNNNAGG 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 3 cut(s) 41, 74, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.