RLG00000035325

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016292
Physical Location & Seq
Forward (+)
64994118 .. 64995396
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035325

Sequence Viewer

Length: 774 bp
ATGATGAAGCAGCAGCTACAATCTCTTTTCTCACTCCCATTGCTGTTCATCCTCCTCTCCCACTACTGCACCGGAATCTCAGCTCAAGGCCCAGCTGCAAGCCCAATGGCAGGTCCGATAGCCGACGCTCCAGCACCGCCGGGACCAACCAACGTCACCAAAATACTTGAAAAATCCGGCGGCTTCGACCTCTTCATCCGCCTGTTGAAAACCACCCAAGTCGACGGCCAACTCTACAGCCAACTCAACAACTCCGACAGCAAATTGACCATCTTGGCCCCAACGGACTCTGCCTTCTCGAAACTCAAATCAGGGTCTCTCAACTCCCTCAGCGACTCTCAGAAGGATCAGCTCTTGCAGTTCCATCTCATCCCAGATTTTCTCACCATGTCAAACTTCCAAACTCTCAGCAACCCGGTTCGAACCCAAGCCGGAGACCAGTTTGAGTTCCCGCTAAACATTACCACATCTGGAAACTCAGTGAACATTACCACTGGTCTTGTCAACACTTCAATTTCAGGCACTGTGTATACGGATAACCAACTGGCGATTTATCAGGTCGACAGTGTGCTACAGCCTTATGGGATTTTTGCTCCCAAGCCTCTGCCCCCTTCCCCAGCACCAGCACCGGAAAAGGCAAAGCCTAATAAAAAGGCTTCAAGCCCAGTTGCCGCTGTGAAATCTGCTGCAGGGTCGGTAGTCTGTGATCTCTCCAGAAATGGGTTGGTCTCCATTGGAGTTGCTGTGGTGTTTGCAGCGGTAATGTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

258

Amino Acids

27.13

Weight (kDa)

8.49

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 61 - 193 4.1e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccI GTMKAC 3 cut(s) 222, 530, 561
AciI CCGC 6 cut(s) 137, 180, 199, 452, 672, 758
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 110, 720
AgsI TTSAA 4 cut(s) 170, 208, 513, 660
AluBI AGCT 4 cut(s) 16, 83, 95, 352
AluI AGCT 4 cut(s) 16, 83, 95, 352
Alw26I GTCTC 3 cut(s) 321, 429, 733
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 3 cut(s) 88, 226, 276
ApeKI GCWGC 5 cut(s) 10, 13, 95, 686, 755
AspS9I GGNCC 4 cut(s) 89, 113, 143, 277
AsuC2I CCSGG 2 cut(s) 141, 416
AsuHPI GGTGA 2 cut(s) 148, 376
AsuII TTCGAA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 113, 143
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 5 cut(s) 22, 25, 82, 673, 767
BccI CCATC 2 cut(s) 278, 372
BceAI ACGGC 1 cut(s) 241
BcnI CCSGG 2 cut(s) 141, 416
BcoDI GTCTC 3 cut(s) 321, 429, 733
BfmI CTRYAG 3 cut(s) 235, 572, 687
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 7 cut(s) 11, 14, 96, 181, 672, 687, 756
BlsI GCNGC 7 cut(s) 12, 15, 97, 182, 673, 688, 757
Bme1390I CCNGG 2 cut(s) 141, 416
Bme18I GGWCC 2 cut(s) 113, 143
BmgT120I GGNCC 4 cut(s) 89, 113, 143, 277
BmiI GGNNCC 2 cut(s) 144, 279
BmrFI CCNGG 2 cut(s) 141, 416
BmrI ACTGGG 1 cut(s) 659
BmuI ACTGGG 1 cut(s) 659
BpmI CTGGAG 2 cut(s) 114, 697
Bpu10I CCTNAGC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 141, 416
BsaI GGTCTC 3 cut(s) 321, 429, 733
BsaWI WCCGGW 2 cut(s) 71, 628
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 720
Bse1I ACTGG 4 cut(s) 439, 499, 549, 665
Bse3DI GCAATG 1 cut(s) 38
BseGI GGATG 3 cut(s) 48, 195, 369
BseLI CCNNNNNNNGG 2 cut(s) 110, 720
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 5 cut(s) 93, 343, 353, 421, 492
BseNI ACTGG 4 cut(s) 439, 499, 549, 665
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 22, 25, 82, 673, 767
BseYI CCCAGC 2 cut(s) 91, 616
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 3 cut(s) 90, 228, 278
BsiSI CCGG 6 cut(s) 72, 140, 177, 416, 432, 629
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 110, 720
BsmAI GTCTC 3 cut(s) 321, 429, 733
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 3 cut(s) 90, 228, 278
Bso31I GGTCTC 3 cut(s) 321, 429, 733
Bsp119I TTCGAA 1 cut(s) 421
Bsp143I GATC 2 cut(s) 346, 706
BspACI CCGC 6 cut(s) 137, 180, 199, 452, 672, 758
BspANI GGCC 3 cut(s) 90, 228, 278
BspCNI CTCAG 5 cut(s) 92, 342, 352, 420, 491
BspLI GGNNCC 2 cut(s) 144, 279
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 421
BspTNI GGTCTC 3 cut(s) 321, 429, 733
BsrDI GCAATG 1 cut(s) 38
BsrI ACTGG 4 cut(s) 439, 499, 549, 665
BssMI GATC 2 cut(s) 346, 706
BssNAI GTATAC 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 526, 566
Bst6I CTCTTC 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 5 cut(s) 79, 329, 339, 407, 478
BstF5I GGATG 3 cut(s) 48, 195, 369
BstKTI GATC 2 cut(s) 349, 709
BstMAI GTCTC 3 cut(s) 321, 429, 733
BstMBI GATC 2 cut(s) 346, 706
BstSCI CCNGG 2 cut(s) 139, 414
BstSFI CTRYAG 3 cut(s) 235, 572, 687
BstV1I GCAGC 5 cut(s) 22, 25, 82, 673, 767
BstZ17I GTATAC 1 cut(s) 531
BsuRI GGCC 3 cut(s) 90, 228, 278
BtsCI GGATG 3 cut(s) 48, 195, 369
BtsIMutI CAGTG 4 cut(s) 486, 492, 522, 571
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 4 cut(s) 89, 113, 143, 277
CseI GACGC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 1 cut(s) 388
DdeI CTNAG 5 cut(s) 79, 329, 339, 407, 478
DpnI GATC 2 cut(s) 348, 708
DpnII GATC 2 cut(s) 346, 706
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 188
Eco31I GGTCTC 3 cut(s) 321, 429, 733
Eco47I GGWCC 2 cut(s) 113, 143
FaeI CATG 1 cut(s) 391
FaiI YATR 3 cut(s) 389, 531, 582
FaqI GGGAC 1 cut(s) 156
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 459
FblI GTMKAC 3 cut(s) 222, 530, 561
Fnu4HI GCNGC 7 cut(s) 11, 14, 96, 181, 672, 687, 756
FokI GGATG 3 cut(s) 35, 182, 356
Fsp4HI GCNGC 7 cut(s) 11, 14, 96, 181, 672, 687, 756
GluI GCNGC 7 cut(s) 11, 14, 96, 181, 672, 687, 756
GsaI CCCAGC 2 cut(s) 95, 620
GsuI CTGGAG 2 cut(s) 114, 697
HaeIII GGCC 3 cut(s) 90, 228, 278
HapII CCGG 6 cut(s) 72, 140, 177, 416, 432, 629
HgaI GACGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 391
HincII GTYRAC 3 cut(s) 223, 505, 562
HindII GTYRAC 3 cut(s) 223, 505, 562
HinfI GANTC 3 cut(s) 75, 287, 335
HpaII CCGG 6 cut(s) 72, 140, 177, 416, 432, 629
HphI GGTGA 2 cut(s) 148, 376
Hpy166II GTNNAC 5 cut(s) 223, 484, 505, 531, 562
Hpy188I TCNGA 3 cut(s) 117, 256, 342
Hpy188III TCNNGA 3 cut(s) 298, 471, 714
Hpy8I GTNNAC 5 cut(s) 223, 484, 505, 531, 562
Hpy99I CGWCG 2 cut(s) 128, 227
HpyAV CCTTC 3 cut(s) 304, 337, 621
HpyCH4III ACNGT 2 cut(s) 526, 566
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 69, 98, 358, 689, 755
HpyF3I CTNAG 5 cut(s) 79, 329, 339, 407, 478
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 2 cut(s) 346, 706
LmnI GCTCC 2 cut(s) 133, 598
Lsp1109I GCAGC 5 cut(s) 22, 25, 82, 673, 767
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 348, 708
MboI GATC 2 cut(s) 346, 706
MboII GAAGA 1 cut(s) 184
MluCI AATT 2 cut(s) 263, 513
MlyI GAGTC 2 cut(s) 281, 329
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 5 cut(s) 62, 65, 200, 338, 612
MspA1I CMGCKG 3 cut(s) 95, 674, 758
MspI CCGG 6 cut(s) 72, 140, 177, 416, 432, 629
MspR9I CCNGG 2 cut(s) 141, 416
NciI CCSGG 2 cut(s) 141, 416
NdeII GATC 2 cut(s) 346, 706
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 144, 279
NmuCI GTSAC 1 cut(s) 154
NspV TTCGAA 1 cut(s) 421
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 7 cut(s) 12, 15, 97, 182, 673, 688, 757
PleI GAGTC 2 cut(s) 281, 329
PpsI GAGTC 2 cut(s) 281, 329
PspFI CCCAGC 2 cut(s) 91, 616
PspN4I GGNNCC 2 cut(s) 144, 279
PspPI GGNCC 4 cut(s) 89, 113, 143, 277
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 95
SalI GTCGAC 2 cut(s) 221, 560
SatI GCNGC 7 cut(s) 11, 14, 96, 181, 672, 687, 756
Sau3AI GATC 2 cut(s) 346, 706
Sau96I GGNCC 4 cut(s) 89, 113, 143, 277
SchI GAGTC 2 cut(s) 281, 329
ScrFI CCNGG 2 cut(s) 141, 416
SetI ASST 8 cut(s) 18, 85, 97, 115, 156, 192, 354, 561
SfcI CTRYAG 3 cut(s) 235, 572, 687
SfuI TTCGAA 1 cut(s) 421
SinI GGWCC 2 cut(s) 113, 143
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 263, 513
SsiI CCGC 6 cut(s) 137, 180, 199, 452, 672, 758
StyD4I CCNGG 2 cut(s) 139, 414
TaaI ACNGT 2 cut(s) 526, 566
TaiI ACGT 1 cut(s) 156
TaqI TCGA 5 cut(s) 186, 222, 299, 421, 561
TasI AATT 2 cut(s) 263, 513
TauI GCSGC 2 cut(s) 183, 674
TfiI GAWTC 1 cut(s) 75
TscAI CASTG 4 cut(s) 486, 499, 529, 571
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 5 cut(s) 10, 13, 95, 686, 755
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 20, 37, 184
TspGWI ACGGA 2 cut(s) 299, 548
TspRI CASTG 4 cut(s) 486, 499, 529, 571
VpaK11BI GGWCC 2 cut(s) 113, 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 3 cut(s) 222, 530, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.