MD03G1114600.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016292
Physical Location & Seq
Forward (+)
10011687 .. 10012148
462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1114600.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAACTCGCTCAGCGTTGAACAAAAAGTCAAGCTCTTGCAATTCCATCTAATCCCAGATTACCTCACTACCCAAAACTTCCAAACTGTGAGCAATCCGGTGAGAACCCAAGTCGGAAACGGTTTCGATTACCCGCTAAACATCACCACATCAGGCAAGACAGTGAACATTTCAACTGGCCTTGTCAACACTTCAATCTCAGACACTGTCTACTCTGATGGTCAATTGGCTATTTACCAAGTTGACAGTGTGCTCCAACCCTATGGTATTTTTGCTCCCAAGCTTCGGCTGCCGTCACCGGCATCCGCTCCTGGAGAAGAACAGCCTAAGGAGGAGCCTTCTCTTGACCCTGTTGCTGAAGTGAAGTCTGGTGCTGTGCCTACACTGAATATCCCCAAGATTAATGGCATTGTCTCTATTGGAGTTGCATTATTAGCTGCTGCAGCTATAAACTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

154

Amino Acids

16.3

Weight (kDa)

4.96

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 6 - 87 1.4e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 210
AciI CCGC 2 cut(s) 134, 306
AcuI CTGAAG 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 20, 174, 195
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 34, 283, 437, 446
AluI AGCT 4 cut(s) 34, 283, 437, 446
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 4 cut(s) 289, 437, 440, 443
AseI ATTAAT 1 cut(s) 402
AsuHPI GGTGA 3 cut(s) 112, 136, 288
AxyI CCTNAGG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 276, 424, 427, 455
BccI CCATC 2 cut(s) 54, 212
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 4 cut(s) 290, 438, 441, 444
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 4 cut(s) 291, 439, 442, 445
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 25, 213
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 276, 424, 427, 455
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 98, 299
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 418
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 2 cut(s) 134, 306
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 24, 212
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 445
BsrBI CCGCTC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 5 cut(s) 88, 122, 163, 208, 248
BstDEI CTNAG 3 cut(s) 11, 199, 327
BstF5I GGATG 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 418
BstMWI GCNNNNNNNGC 3 cut(s) 289, 434, 443
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 276, 424, 427, 455
BstXI CCANNNNNNTGG 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 302
BtsIMutI CAGTG 4 cut(s) 168, 204, 253, 383
CaiI CAGNNNCTG 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 298
CviJI RGCY 9 cut(s) 34, 180, 230, 283, 289, 325, 337, 437, 446
CviKI_1 RGCY 9 cut(s) 34, 180, 230, 283, 289, 325, 337, 437, 446
DdeI CTNAG 3 cut(s) 11, 199, 327
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 310
FaiI YATR 2 cut(s) 264, 449
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 290, 438, 441, 444
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 4 cut(s) 290, 438, 441, 444
GluI GCNGC 4 cut(s) 290, 438, 441, 444
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 98, 299
HincII GTYRAC 2 cut(s) 187, 244
HindII GTYRAC 2 cut(s) 187, 244
HindIII AAGCTT 1 cut(s) 281
HpaII CCGG 2 cut(s) 98, 299
HphI GGTGA 3 cut(s) 112, 136, 288
Hpy166II GTNNAC 4 cut(s) 166, 187, 211, 244
Hpy188I TCNGA 3 cut(s) 116, 202, 217
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 4 cut(s) 166, 187, 211, 244
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 5 cut(s) 88, 122, 163, 208, 248
HpyCH4V TGCA 3 cut(s) 40, 428, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 434, 443
HpyF3I CTNAG 3 cut(s) 11, 199, 327
LmnI GCTCC 4 cut(s) 258, 280, 313, 334
LpnPI CCDG 9 cut(s) 69, 111, 138, 162, 297, 312, 324, 354, 363
Lsp1109I GCAGC 4 cut(s) 276, 424, 427, 455
LweI GCATC 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 294
MbiI CCGCTC 1 cut(s) 308
MboII GAAGA 1 cut(s) 329
MfeI CAATTG 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 41, 224
MmeI TCCRAC 2 cut(s) 94, 280
MnlI CCTC 2 cut(s) 74, 325
MseI TTAA 1 cut(s) 402
MspI CCGG 2 cut(s) 98, 299
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 289, 434, 443
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 294
PflFI GACNNNGTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 4 cut(s) 291, 439, 442, 445
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 4 cut(s) 290, 438, 441, 444
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 255
SetI ASST 5 cut(s) 36, 66, 285, 439, 448
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 441
Sse9I AATT 2 cut(s) 41, 224
SsiI CCGC 2 cut(s) 134, 306
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 5 cut(s) 88, 122, 163, 208, 248
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 41, 224
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 4 cut(s) 168, 211, 253, 390
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 4 cut(s) 289, 437, 440, 443
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 168, 211, 253, 390
Tth111I GACNNNGTC 1 cut(s) 206
VspI ATTAAT 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.