SWIM zinc finger family protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g33711 FvH4_5g30251 |
| rosa_multiflora | Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00106470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2337 |
| Acc16I | TGCGCA | 1 cut(s) | 828 |
| AccB1I | GGYRCC | 1 cut(s) | 598 |
| AccI | GTMKAC | 1 cut(s) | 67 |
| AccII | CGCG | 1 cut(s) | 894 |
| AccIII | TCCGGA | 2 cut(s) | 160, 235 |
| AciI | CCGC | 2 cut(s) | 803, 1634 |
| AclWI | GGATC | 6 cut(s) | 1080, 1178, 1418, 2783, 3031, 3123 |
| AcsI | RAATTY | 5 cut(s) | 436, 745, 1049, 1873, 3029 |
| AcvI | CACGTG | 1 cut(s) | 1641 |
| AcyI | GRCGYC | 1 cut(s) | 1274 |
| AdeI | CACNNNGTG | 1 cut(s) | 943 |
| AfaI | GTAC | 3 cut(s) | 257, 960, 2021 |
| AfeI | AGCGCT | 2 cut(s) | 1148, 2119 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 191, 272, 984, 1876, 2144, 2446, 2536 |
| AflII | CTTAAG | 1 cut(s) | 56 |
| AflIII | ACRYGT | 4 cut(s) | 1299, 1964, 3007, 3067 |
| AjiI | CACGTC | 1 cut(s) | 1548 |
| AjnI | CCWGG | 1 cut(s) | 3019 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1524, 1556, 2623, 2655 |
| Alw21I | GWGCWC | 4 cut(s) | 847, 1165, 1739, 2881 |
| Alw26I | GTCTC | 5 cut(s) | 477, 509, 1447, 1703, 2984 |
| AlwI | GGATC | 6 cut(s) | 1080, 1178, 1418, 2783, 3031, 3123 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 513 |
| Ama87I | CYCGRG | 2 cut(s) | 467, 3290 |
| Aor13HI | TCCGGA | 2 cut(s) | 160, 235 |
| Aor51HI | AGCGCT | 2 cut(s) | 1148, 2119 |
| AoxI | GGCC | 6 cut(s) | 263, 493, 531, 804, 1878, 3249 |
| ApeKI | GCWGC | 6 cut(s) | 278, 735, 824, 1293, 1808, 1919 |
| ApoI | RAATTY | 5 cut(s) | 436, 745, 1049, 1873, 3029 |
| AseI | ATTAAT | 1 cut(s) | 2706 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1794, 2347, 2493 |
| AspLEI | GCGC | 6 cut(s) | 524, 829, 894, 1149, 1846, 2120 |
| AspS9I | GGNCC | 6 cut(s) | 82, 805, 1097, 2437, 3218, 3249 |
| AsuC2I | CCSGG | 2 cut(s) | 477, 1034 |
| AvaI | CYCGRG | 2 cut(s) | 467, 3290 |
| AvaII | GGWCC | 4 cut(s) | 82, 1097, 2437, 3218 |
| AxyI | CCTNAGG | 1 cut(s) | 2015 |
| BaeGI | GKGCMC | 2 cut(s) | 601, 2935 |
| BanI | GGYRCC | 1 cut(s) | 598 |
| BanII | GRGCYC | 1 cut(s) | 3291 |
| BbrPI | CACGTG | 1 cut(s) | 1641 |
| BbsI | GAAGAC | 3 cut(s) | 171, 2078, 2913 |
| Bbv12I | GWGCWC | 4 cut(s) | 847, 1165, 1739, 2881 |
| BbvI | GCAGC | 6 cut(s) | 265, 747, 811, 1280, 1795, 1906 |
| BccI | CCATC | 8 cut(s) | 99, 197, 1141, 1429, 1549, 1607, 2225, 2693 |
| BceAI | ACGGC | 1 cut(s) | 2951 |
| BciT130I | CCWGG | 1 cut(s) | 3021 |
| BclI | TGATCA | 1 cut(s) | 2086 |
| BcnI | CCSGG | 2 cut(s) | 477, 1034 |
| BcoDI | GTCTC | 5 cut(s) | 477, 509, 1447, 1703, 2984 |
| BfaI | CTAG | 7 cut(s) | 441, 911, 1290, 1851, 2498, 2577, 3320 |
| BfmI | CTRYAG | 1 cut(s) | 1950 |
| BfoI | RGCGCY | 2 cut(s) | 1150, 2121 |
| BfrI | CTTAAG | 1 cut(s) | 56 |
| BglII | AGATCT | 1 cut(s) | 1523 |
| BisI | GCNGC | 7 cut(s) | 279, 736, 804, 825, 1294, 1809, 1920 |
| BlsI | GCNGC | 7 cut(s) | 280, 737, 805, 826, 1295, 1810, 1921 |
| Bme1390I | CCNGG | 3 cut(s) | 477, 1034, 3021 |
| Bme18I | GGWCC | 4 cut(s) | 82, 1097, 2437, 3218 |
| BmeT110I | CYCGRG | 2 cut(s) | 467, 3290 |
| BmgBI | CACGTC | 1 cut(s) | 1548 |
| BmgT120I | GGNCC | 6 cut(s) | 82, 805, 1097, 2437, 3218, 3249 |
| BmiI | GGNNCC | 9 cut(s) | 120, 600, 807, 976, 1099, 2100, 2438, 2451, 3017 |
| BmrFI | CCNGG | 3 cut(s) | 477, 1034, 3021 |
| BmrI | ACTGGG | 2 cut(s) | 247, 764 |
| BmsI | GCATC | 6 cut(s) | 1038, 1667, 1906, 2616, 3048, 3087 |
| BmuI | ACTGGG | 2 cut(s) | 247, 764 |
| BpiI | GAAGAC | 3 cut(s) | 171, 2078, 2913 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 410, 442 |
| BpuEI | CTTGAG | 5 cut(s) | 512, 593, 1236, 2057, 2855 |
| BpuMI | CCSGG | 2 cut(s) | 477, 1034 |
| BsaAI | YACGTR | 2 cut(s) | 1641, 1967 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1410 |
| BsaHI | GRCGYC | 1 cut(s) | 1274 |
| BsaI | GGTCTC | 1 cut(s) | 509 |
| BsaJI | CCNNGG | 7 cut(s) | 114, 185, 1817, 2251, 2262, 3019, 3153 |
| BsaWI | WCCGGW | 2 cut(s) | 160, 235 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 191, 272, 984, 1876, 2144, 2446, 2536 |
| Bse1I | ACTGG | 7 cut(s) | 233, 253, 759, 1201, 2698, 2788, 3252 |
| Bse21I | CCTNAGG | 1 cut(s) | 2015 |
| Bse3DI | GCAATG | 7 cut(s) | 730, 1047, 1323, 1510, 2430, 2982, 3114 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1410 |
| BseAI | TCCGGA | 2 cut(s) | 160, 235 |
| BseBI | CCWGG | 1 cut(s) | 3021 |
| BseDI | CCNNGG | 7 cut(s) | 114, 185, 1817, 2251, 2262, 3019, 3153 |
| BseGI | GGATG | 6 cut(s) | 922, 1029, 1333, 1834, 2631, 3097 |
| BseJI | GATNNNNATC | 1 cut(s) | 1410 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 191, 272, 984, 1876, 2144, 2446, 2536 |
| BseMI | GCAATG | 7 cut(s) | 730, 1047, 1323, 1510, 2430, 2982, 3114 |
| BseMII | CTCAG | 6 cut(s) | 36, 284, 520, 531, 1434, 2029 |
| BseNI | ACTGG | 7 cut(s) | 233, 253, 759, 1201, 2698, 2788, 3252 |
| BseRI | GAGGAG | 3 cut(s) | 345, 2111, 2852 |
| BseSI | GKGCMC | 2 cut(s) | 601, 2935 |
| BseXI | GCAGC | 6 cut(s) | 265, 747, 811, 1280, 1795, 1906 |
| BseYI | CCCAGC | 1 cut(s) | 1068 |
| BsgI | GTGCAG | 2 cut(s) | 920, 2649 |
| Bsh1236I | CGCG | 1 cut(s) | 894 |
| BshFI | GGCC | 6 cut(s) | 265, 495, 533, 806, 1880, 3251 |
| BshNI | GGYRCC | 1 cut(s) | 598 |
| BsiHKAI | GWGCWC | 4 cut(s) | 847, 1165, 1739, 2881 |
| BsiHKCI | CYCGRG | 2 cut(s) | 467, 3290 |
| BsiSI | CCGG | 5 cut(s) | 161, 236, 477, 1033, 2530 |
| BslFI | GGGAC | 4 cut(s) | 2225, 2450, 2556, 3171 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 191, 272, 984, 1876, 2144, 2446, 2536 |
| BsmAI | GTCTC | 5 cut(s) | 477, 509, 1447, 1703, 2984 |
| BsmBI | CGTCTC | 2 cut(s) | 1703, 2984 |
| BsmFI | GGGAC | 4 cut(s) | 2225, 2450, 2556, 3171 |
| BsmI | GAATGC | 3 cut(s) | 11, 1884, 2948 |
| BsnI | GGCC | 6 cut(s) | 265, 495, 533, 806, 1880, 3251 |
| Bso31I | GGTCTC | 1 cut(s) | 509 |
| BsoBI | CYCGRG | 2 cut(s) | 467, 3290 |
| Bsp1286I | GDGCHC | 7 cut(s) | 601, 847, 1165, 1739, 2881, 2935, 3291 |
| Bsp13I | TCCGGA | 2 cut(s) | 160, 235 |
| Bsp143I | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| Bsp19I | CCATGG | 1 cut(s) | 2262 |
| BspACI | CCGC | 2 cut(s) | 803, 1634 |
| BspANI | GGCC | 6 cut(s) | 265, 495, 533, 806, 1880, 3251 |
| BspCNI | CTCAG | 6 cut(s) | 37, 285, 519, 532, 1433, 2028 |
| BspEI | TCCGGA | 2 cut(s) | 160, 235 |
| BspFNI | CGCG | 1 cut(s) | 894 |
| BspHI | TCATGA | 4 cut(s) | 1618, 1989, 2388, 2644 |
| BspLI | GGNNCC | 9 cut(s) | 120, 600, 807, 976, 1099, 2100, 2438, 2451, 3017 |
| BspMAI | CTGCAG | 1 cut(s) | 1954 |
| BspPI | GGATC | 6 cut(s) | 1080, 1178, 1418, 2783, 3031, 3123 |
| BspT107I | GGYRCC | 1 cut(s) | 598 |
| BspTI | CTTAAG | 1 cut(s) | 56 |
| BspTNI | GGTCTC | 1 cut(s) | 509 |
| BsrDI | GCAATG | 7 cut(s) | 730, 1047, 1323, 1510, 2430, 2982, 3114 |
| BsrI | ACTGG | 7 cut(s) | 233, 253, 759, 1201, 2698, 2788, 3252 |
| BssECI | CCNNGG | 7 cut(s) | 114, 185, 1817, 2251, 2262, 3019, 3153 |
| BssMI | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| BssNI | GRCGYC | 1 cut(s) | 1274 |
| BssT1I | CCWWGG | 6 cut(s) | 114, 185, 1817, 2251, 2262, 3153 |
| Bst2UI | CCWGG | 1 cut(s) | 3021 |
| Bst6I | CTCTTC | 1 cut(s) | 2029 |
| BstACI | GRCGYC | 1 cut(s) | 1274 |
| BstAFI | CTTAAG | 1 cut(s) | 56 |
| BstBAI | YACGTR | 2 cut(s) | 1641, 1967 |
| BstC8I | GCNNGC | 5 cut(s) | 419, 1882, 2116, 2518, 3188 |
| BstDSI | CCRYGG | 1 cut(s) | 2262 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 189 |
| BstF5I | GGATG | 6 cut(s) | 922, 1029, 1333, 1834, 2631, 3097 |
| BstFNI | CGCG | 1 cut(s) | 894 |
| BstH2I | RGCGCY | 2 cut(s) | 1150, 2121 |
| BstHHI | GCGC | 6 cut(s) | 524, 829, 894, 1149, 1846, 2120 |
| BstKTI | GATC | 9 cut(s) | 1075, 1186, 1426, 1526, 2089, 2595, 2791, 3026, 3118 |
| BstMAI | GTCTC | 5 cut(s) | 477, 509, 1447, 1703, 2984 |
| BstMBI | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 530, 998, 1585, 2825 |
| BstNI | CCWGG | 1 cut(s) | 3021 |
| BstNSI | RCATGY | 6 cut(s) | 1303, 1592, 1753, 3011, 3071, 3190 |
| BstSCI | CCNGG | 3 cut(s) | 475, 1032, 3019 |
| BstSFI | CTRYAG | 1 cut(s) | 1950 |
| BstSLI | GKGCMC | 2 cut(s) | 601, 2935 |
| BstUI | CGCG | 1 cut(s) | 894 |
| BstV1I | GCAGC | 6 cut(s) | 265, 747, 811, 1280, 1795, 1906 |
| BstV2I | GAAGAC | 3 cut(s) | 171, 2078, 2913 |
| BstX2I | RGATCY | 3 cut(s) | 1072, 1423, 1523 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 186 |
| BstYI | RGATCY | 3 cut(s) | 1072, 1423, 1523 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2015 |
| BsuRI | GGCC | 6 cut(s) | 265, 495, 533, 806, 1880, 3251 |
| BtgI | CCRYGG | 1 cut(s) | 2262 |
| BtrI | CACGTC | 1 cut(s) | 1548 |
| BtsCI | GGATG | 6 cut(s) | 922, 1029, 1333, 1834, 2631, 3097 |
| BtsI | GCAGTG | 3 cut(s) | 135, 534, 932 |
| Cac8I | GCNNGC | 5 cut(s) | 419, 1882, 2116, 2518, 3188 |
| CaiI | CAGNNNCTG | 1 cut(s) | 513 |
| CciI | TCATGA | 4 cut(s) | 1618, 1989, 2388, 2644 |
| CfoI | GCGC | 6 cut(s) | 524, 829, 894, 1149, 1846, 2120 |
| Cfr13I | GGNCC | 6 cut(s) | 82, 805, 1097, 2437, 3218, 3249 |
| CseI | GACGC | 1 cut(s) | 1263 |
| Csp6I | GTAC | 3 cut(s) | 256, 959, 2020 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 375, 410 |
| CviQI | GTAC | 3 cut(s) | 256, 959, 2020 |
| DpnI | GATC | 9 cut(s) | 1074, 1185, 1425, 1525, 2088, 2594, 2790, 3025, 3117 |
| DpnII | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| DraIII | CACNNNGTG | 1 cut(s) | 943 |
| Eam1104I | CTCTTC | 1 cut(s) | 2029 |
| EarI | CTCTTC | 1 cut(s) | 2029 |
| Eco130I | CCWWGG | 6 cut(s) | 114, 185, 1817, 2251, 2262, 3153 |
| Eco24I | GRGCYC | 1 cut(s) | 3291 |
| Eco31I | GGTCTC | 1 cut(s) | 509 |
| Eco47I | GGWCC | 4 cut(s) | 82, 1097, 2437, 3218 |
| Eco47III | AGCGCT | 2 cut(s) | 1148, 2119 |
| Eco72I | CACGTG | 1 cut(s) | 1641 |
| Eco81I | CCTNAGG | 1 cut(s) | 2015 |
| Eco88I | CYCGRG | 2 cut(s) | 467, 3290 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 189 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2437 |
| EcoRI | GAATTC | 2 cut(s) | 745, 1049 |
| EcoRII | CCWGG | 1 cut(s) | 3019 |
| EcoT14I | CCWWGG | 6 cut(s) | 114, 185, 1817, 2251, 2262, 3153 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 3291 |
| ErhI | CCWWGG | 6 cut(s) | 114, 185, 1817, 2251, 2262, 3153 |
| Esp3I | CGTCTC | 2 cut(s) | 1703, 2984 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 483, 515, 1094, 1126, 2662, 2694 |
| FaqI | GGGAC | 4 cut(s) | 2225, 2450, 2556, 3171 |
| FbaI | TGATCA | 1 cut(s) | 2086 |
| FblI | GTMKAC | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 7 cut(s) | 279, 736, 804, 825, 1294, 1809, 1920 |
| FokI | GGATG | 6 cut(s) | 929, 1016, 1320, 1821, 2638, 3104 |
| FriOI | GRGCYC | 1 cut(s) | 3291 |
| Fsp4HI | GCNGC | 7 cut(s) | 279, 736, 804, 825, 1294, 1809, 1920 |
| FspBI | CTAG | 7 cut(s) | 441, 911, 1290, 1851, 2498, 2577, 3320 |
| FspI | TGCGCA | 1 cut(s) | 828 |
| GlaI | GCGC | 6 cut(s) | 523, 828, 893, 1148, 1845, 2119 |
| GluI | GCNGC | 7 cut(s) | 279, 736, 804, 825, 1294, 1809, 1920 |
| GsaI | CCCAGC | 1 cut(s) | 1072 |
| HaeII | RGCGCY | 2 cut(s) | 1150, 2121 |
| HaeIII | GGCC | 6 cut(s) | 265, 495, 533, 806, 1880, 3251 |
| HapII | CCGG | 5 cut(s) | 161, 236, 477, 1033, 2530 |
| HgaI | GACGC | 1 cut(s) | 1263 |
| HhaI | GCGC | 6 cut(s) | 524, 829, 894, 1149, 1846, 2120 |
| Hin1I | GRCGYC | 1 cut(s) | 1274 |
| Hin6I | GCGC | 6 cut(s) | 522, 827, 892, 1147, 1844, 2118 |
| HinP1I | GCGC | 6 cut(s) | 522, 827, 892, 1147, 1844, 2118 |
| HincII | GTYRAC | 3 cut(s) | 68, 1690, 3310 |
| HindII | GTYRAC | 3 cut(s) | 68, 1690, 3310 |
| HindIII | AAGCTT | 3 cut(s) | 1326, 2490, 2583 |
| HpaII | CCGG | 5 cut(s) | 161, 236, 477, 1033, 2530 |
| Hpy166II | GTNNAC | 8 cut(s) | 68, 325, 376, 959, 1690, 2369, 2781, 3310 |
| Hpy8I | GTNNAC | 8 cut(s) | 68, 325, 376, 959, 1690, 2369, 2781, 3310 |
| Hpy99I | CGWCG | 1 cut(s) | 72 |
| HpyAV | CCTTC | 3 cut(s) | 1437, 1553, 3106 |
| HpyCH4IV | ACGT | 6 cut(s) | 70, 1547, 1640, 1966, 2991, 3177 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 530, 998, 1585, 2825 |
| HpySE526I | ACGT | 6 cut(s) | 70, 1547, 1640, 1966, 2991, 3177 |
| Hsp92I | GRCGYC | 1 cut(s) | 1274 |
| HspAI | GCGC | 6 cut(s) | 522, 827, 892, 1147, 1844, 2118 |
| Kpn2I | TCCGGA | 2 cut(s) | 160, 235 |
| Ksp22I | TGATCA | 1 cut(s) | 2086 |
| Kzo9I | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| LmnI | GCTCC | 9 cut(s) | 103, 163, 275, 946, 1208, 1584, 2098, 2714, 2876 |
| Lsp1109I | GCAGC | 6 cut(s) | 265, 747, 811, 1280, 1795, 1906 |
| LweI | GCATC | 6 cut(s) | 1038, 1667, 1906, 2616, 3048, 3087 |
| MaeI | CTAG | 7 cut(s) | 441, 911, 1290, 1851, 2498, 2577, 3320 |
| MaeII | ACGT | 6 cut(s) | 70, 1547, 1640, 1966, 2991, 3177 |
| MalI | GATC | 9 cut(s) | 1074, 1185, 1425, 1525, 2088, 2594, 2790, 3025, 3117 |
| MboI | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| MfeI | CAATTG | 2 cut(s) | 1236, 1369 |
| MflI | RGATCY | 3 cut(s) | 1072, 1423, 1523 |
| MhlI | GDGCHC | 7 cut(s) | 601, 847, 1165, 1739, 2881, 2935, 3291 |
| MlyI | GAGTC | 7 cut(s) | 292, 311, 476, 479, 1738, 1825, 3153 |
| MmeI | TCCRAC | 2 cut(s) | 146, 901 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 2 cut(s) | 160, 235 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1794, 2347, 2493 |
| MseI | TTAA | 7 cut(s) | 57, 834, 951, 1826, 2130, 2706, 3198 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1304, 2649 |
| MspCI | CTTAAG | 1 cut(s) | 56 |
| MspI | CCGG | 5 cut(s) | 161, 236, 477, 1033, 2530 |
| MspR9I | CCNGG | 3 cut(s) | 477, 1034, 3021 |
| MunI | CAATTG | 2 cut(s) | 1236, 1369 |
| Mva1269I | GAATGC | 3 cut(s) | 11, 1884, 2948 |
| MvaI | CCWGG | 1 cut(s) | 3021 |
| MvnI | CGCG | 1 cut(s) | 894 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 530, 998, 1585, 2825 |
| NciI | CCSGG | 2 cut(s) | 477, 1034 |
| NcoI | CCATGG | 1 cut(s) | 2262 |
| NdeII | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| NlaIV | GGNNCC | 9 cut(s) | 120, 600, 807, 976, 1099, 2100, 2438, 2451, 3017 |
| NmuCI | GTSAC | 6 cut(s) | 479, 1174, 1636, 1853, 2107, 3041 |
| NsbI | TGCGCA | 1 cut(s) | 828 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 6 cut(s) | 1303, 1592, 1753, 3011, 3071, 3190 |
| PaeI | GCATGC | 1 cut(s) | 3190 |
| PaeR7I | CTCGAG | 1 cut(s) | 467 |
| PagI | TCATGA | 4 cut(s) | 1618, 1989, 2388, 2644 |
| PciI | ACATGT | 3 cut(s) | 1299, 3007, 3067 |
| PctI | GAATGC | 3 cut(s) | 11, 1884, 2948 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1794, 2347, 2493 |
| PfoI | TCCNGGA | 1 cut(s) | 1032 |
| PkrI | GCNGC | 7 cut(s) | 280, 737, 805, 826, 1295, 1810, 1921 |
| PleI | GAGTC | 7 cut(s) | 292, 311, 476, 478, 1738, 1825, 3153 |
| PmaCI | CACGTG | 1 cut(s) | 1641 |
| PmlI | CACGTG | 1 cut(s) | 1641 |
| PpsI | GAGTC | 7 cut(s) | 292, 311, 476, 478, 1738, 1825, 3153 |
| Ppu21I | YACGTR | 2 cut(s) | 1641, 1967 |
| PpuMI | RGGWCCY | 1 cut(s) | 2437 |
| PscI | ACATGT | 3 cut(s) | 1299, 3007, 3067 |
| PshBI | ATTAAT | 1 cut(s) | 2706 |
| PsiI | TTATAA | 1 cut(s) | 2337 |
| Psp5II | RGGWCCY | 1 cut(s) | 2437 |
| Psp6I | CCWGG | 1 cut(s) | 3019 |
| PspCI | CACGTG | 1 cut(s) | 1641 |
| PspFI | CCCAGC | 1 cut(s) | 1068 |
| PspGI | CCWGG | 1 cut(s) | 3019 |
| PspN4I | GGNNCC | 9 cut(s) | 120, 600, 807, 976, 1099, 2100, 2438, 2451, 3017 |
| PspPI | GGNCC | 6 cut(s) | 82, 805, 1097, 2437, 3218, 3249 |
| PspPPI | RGGWCCY | 1 cut(s) | 2437 |
| PstI | CTGCAG | 1 cut(s) | 1954 |
| PstNI | CAGNNNCTG | 1 cut(s) | 513 |
| PsuI | RGATCY | 3 cut(s) | 1072, 1423, 1523 |
| RsaI | GTAC | 3 cut(s) | 257, 960, 2021 |
| RsaNI | GTAC | 3 cut(s) | 256, 959, 2020 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1304, 2649 |
| SalI | GTCGAC | 1 cut(s) | 66 |
| SaqAI | TTAA | 7 cut(s) | 57, 834, 951, 1826, 2130, 2706, 3198 |
| SatI | GCNGC | 7 cut(s) | 279, 736, 804, 825, 1294, 1809, 1920 |
| Sau3AI | GATC | 9 cut(s) | 1072, 1183, 1423, 1523, 2086, 2592, 2788, 3023, 3115 |
| Sau96I | GGNCC | 6 cut(s) | 82, 805, 1097, 2437, 3218, 3249 |
| SchI | GAGTC | 7 cut(s) | 292, 311, 476, 479, 1738, 1825, 3153 |
| ScrFI | CCNGG | 3 cut(s) | 477, 1034, 3021 |
| SduI | GDGCHC | 7 cut(s) | 601, 847, 1165, 1739, 2881, 2935, 3291 |
| SfaNI | GCATC | 6 cut(s) | 1038, 1667, 1906, 2616, 3048, 3087 |
| SfcI | CTRYAG | 1 cut(s) | 1950 |
| Sfr274I | CTCGAG | 1 cut(s) | 467 |
| SinI | GGWCC | 4 cut(s) | 82, 1097, 2437, 3218 |
| SlaI | CTCGAG | 1 cut(s) | 467 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1304, 2649 |
| SmlI | CTYRAG | 7 cut(s) | 56, 467, 527, 608, 1251, 2036, 2834 |
| SmoI | CTYRAG | 7 cut(s) | 56, 467, 527, 608, 1251, 2036, 2834 |
| SphI | GCATGC | 1 cut(s) | 3190 |
| SsiI | CCGC | 2 cut(s) | 803, 1634 |
| SspMI | CTAG | 7 cut(s) | 441, 911, 1290, 1851, 2498, 2577, 3320 |
| StyD4I | CCNGG | 3 cut(s) | 475, 1032, 3019 |
| StyI | CCWWGG | 6 cut(s) | 114, 185, 1817, 2251, 2262, 3153 |
| TaiI | ACGT | 6 cut(s) | 73, 1550, 1643, 1969, 2994, 3180 |
| TaqI | TCGA | 5 cut(s) | 67, 428, 468, 1862, 2742 |
| TaqII | GACCGA | 1 cut(s) | 975 |
| TatI | WGTACW | 1 cut(s) | 958 |
| TauI | GCSGC | 1 cut(s) | 806 |
| Tru1I | TTAA | 7 cut(s) | 57, 834, 951, 1826, 2130, 2706, 3198 |
| Tru9I | TTAA | 7 cut(s) | 57, 834, 951, 1826, 2130, 2706, 3198 |
| TseFI | GTSAC | 6 cut(s) | 479, 1174, 1636, 1853, 2107, 3041 |
| TseI | GCWGC | 6 cut(s) | 278, 735, 824, 1293, 1808, 1919 |
| Tsp45I | GTSAC | 6 cut(s) | 479, 1174, 1636, 1853, 2107, 3041 |
| TspGWI | ACGGA | 4 cut(s) | 1110, 1381, 1571, 1727 |
| Vha464I | CTTAAG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 4 cut(s) | 82, 1097, 2437, 3218 |
| VspI | ATTAAT | 1 cut(s) | 2706 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 189 |
| XapI | RAATTY | 5 cut(s) | 436, 745, 1049, 1873, 3029 |
| XceI | RCATGY | 6 cut(s) | 1303, 1592, 1753, 3011, 3071, 3190 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1213 |
| XhoI | CTCGAG | 1 cut(s) | 467 |
| XmiI | GTMKAC | 1 cut(s) | 67 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1794, 2347, 2493 |
| XspI | CTAG | 7 cut(s) | 441, 911, 1290, 1851, 2498, 2577, 3320 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |