Rroxscaffold_2G00106470

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
30086491 .. 30091691
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106470.1

Sequence Viewer

Length: 225 bp
ATGCCTTCTTTTAAAGGGGGGGGAGGTGGGGGAATGTTAGGACTCTCTTACATATTGTCTTGGGCTAATGCGTTGAGCTATCTAAATGGGTTGCATTTCCATCTTGGGCTCTACACGGGGTCGGAGTCCACGCATGGGGTGAGTTCATTAAGTGGTCGCCATACTCGATTATCGCCGGGGAGCCGGTACTTGAAGCGTGTGTTAGGGGTTTCGCATAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.85

Weight (kDa)

10.11

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020311)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 151
BanII GRGCYC 1 cut(s) 111
BccI CCATC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 176, 184
BslI CCNNNNNNNGG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 183
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 134
CviJI RGCY 4 cut(s) 65, 78, 109, 183
CviKI_1 RGCY 4 cut(s) 65, 78, 109, 183
CviQI GTAC 1 cut(s) 187
DraI TTTAAA 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 53, 135, 162, 216
FatI CATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 111
HapII CCGG 2 cut(s) 176, 184
Hin1II CATG 1 cut(s) 137
HinfI GANTC 2 cut(s) 42, 125
HpaII CCGG 2 cut(s) 176, 184
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 94
Hsp92II CATG 1 cut(s) 137
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 2 cut(s) 189, 197
MhlI GDGCHC 1 cut(s) 111
MlyI GAGTC 2 cut(s) 36, 134
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 1 cut(s) 17
MseI TTAA 2 cut(s) 12, 149
MspI CCGG 2 cut(s) 176, 184
MspR9I CCNGG 1 cut(s) 177
NciI CCSGG 1 cut(s) 177
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PleI GAGTC 2 cut(s) 36, 133
PpsI GAGTC 2 cut(s) 36, 133
PspN4I GGNNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 12, 149
SchI GAGTC 2 cut(s) 36, 134
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 111
SetI ASST 2 cut(s) 28, 80
StyD4I CCNGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 166
Tru1I TTAA 2 cut(s) 12, 149
Tru9I TTAA 2 cut(s) 12, 149
TspDTI ATGAA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.