FvH4_5g30251

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0020311
Physical Location & Seq
Forward (+)
21192003 .. 21194341
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30251.t1

Sequence Viewer

Length: 1299 bp
ATGCCACATTCGCATAATTGGTTGCCAACTTCCAATTCTCATGAAAGTGTTTATCTATCTGCACTAATACATACTTGGCAAGTTACTACTGGTGATGGTATTAATTTTGGAGCAACCTTGACAAACATCACAGCTCTCGACATGACATATTCTACATCATGGTATCTTCCATGGTTCACTAGTGATCCAAATGCAAATCAAAAGACATTTGGTGCTATGGTAGCATACCTTGAGGAGTTGAAAGTGAAATTGTTTGATGATTCCCATTTCGGACCACTCCAAACAGTTGATTTGGAAGAATATGGTGATTCTTTGTCTTTTCACAGGGCACGGCACATTCCTGCATTCGTTGTTACCTTGAATGCTAAAATCCGTCTCGTTGCTGACGTTTCAAGTATGGAACATGTGTGGAACCCTGGATCAGAATTTTTCCTTTGTGATTGTATGTGGTTGATGCAAGAACATGTCTTTACAGTCAATACAGTGGATGAGATGCTTATAGCAATGACGGATCAGGGTGAAATGGGTTCTGCTGAAGTCCTTGGGACTCACTTCTCTGTTATACGTTCAAGGCCTGAGGACATGCCTTTATTTAAGGGGGGAGGAATGTTAGGACCATTGTGCTATACCTGTATATTACTTTGGGCTAGTGTGTTGATTTACTTAAATGGGCTATTTATTGGGCTCGGCTCGGGTCATATTGTCAACGGGTTTCTAGGTTCTTTCCGTTCCTTGATGGATTCTGATCCCATCAACTGGTATCCAGAGCCGGTTCTGATGTGGAATCTGCAAACTCCTACCATTTTCGTCCCACCCTCATCCACCCTCGTTAACCCACCGCTGTCGCCCCCACCACACTCTGCACTTCAATTGATTCCAACTTTCCAGCCACCCTCAGTCCCTACTTGCGTTCTTGATCCAGCGGCAGCGCAAATTTGCAATGCTTTTGCTGACCGTAGCCATCTGATTCAGGAGCTTCGCACCAAGGTTCCAACTGCTACAACCGCTGCAACCACTATACAGTATGCTCCGGAAGACCCAACGCTTCCAAGCCCTTGGAGAGGGTTGATTGATGGTTCATTAGGTTCTTTGAACATTCATCCCTGTAAACAGAATCTGAACCAGCACCATAACCATAGCAGGCTTCAATGCCTCCATTGCCTTACAATTCTGCATGGCGTCCTATTGATCGGCTTTCCTAAGGTGAGAGACTTTGATCAGTATCCGCCCACCAGTGTTGTTAGTCGTGAGTCTTCTCTTAGTAGAACATGGGCGCTGAACTGTCAGCATGTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

433

Amino Acids

47.99

Weight (kDa)

5.65

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020311)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g33711 FvH4_5g30251
rosa_multiflora Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011
rosa_roxburghii Rroxscaffold_2G00106470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 1030
AciI CCGC 4 cut(s) 839, 923, 1005, 1226
AclWI GGATC 5 cut(s) 179, 427, 519, 740, 911
AcsI RAATTY 2 cut(s) 425, 933
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 1179
AfiI CCNNNNNNNGG 2 cut(s) 756, 1061
AflIII ACRYGT 2 cut(s) 403, 463
AgsI TTSAA 7 cut(s) 241, 361, 393, 570, 869, 1093, 1148
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 2 cut(s) 134, 976
AluI AGCT 2 cut(s) 134, 976
Alw26I GTCTC 2 cut(s) 380, 1203
AlwI GGATC 5 cut(s) 179, 427, 519, 740, 911
AlwNI CAGNNNCTG 1 cut(s) 1117
Ama87I CYCGRG 1 cut(s) 691
Aor13HI TCCGGA 1 cut(s) 1030
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 926, 1007
ApoI RAATTY 2 cut(s) 425, 933
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 2 cut(s) 931, 1276
AspS9I GGNCC 2 cut(s) 272, 614
AsuHPI GGTGA 4 cut(s) 104, 317, 530, 1216
AvaI CYCGRG 1 cut(s) 691
AvaII GGWCC 2 cut(s) 272, 614
AxyI CCTNAGG 2 cut(s) 576, 1200
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 2 cut(s) 1041, 1245
BbvI GCAGC 2 cut(s) 938, 994
BccI CCATC 5 cut(s) 89, 730, 758, 969, 1067
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 417
BciVI GTATCC 2 cut(s) 771, 1233
BclI TGATCA 1 cut(s) 1216
BcoDI GTCTC 2 cut(s) 380, 1203
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 3 cut(s) 180, 648, 716
BfoI RGCGCY 1 cut(s) 1277
BfuI GTATCC 2 cut(s) 771, 1233
BisI GCNGC 3 cut(s) 924, 927, 1008
BlsI GCNGC 3 cut(s) 925, 928, 1009
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 2 cut(s) 272, 614
BmeT110I CYCGRG 1 cut(s) 691
BmgT120I GGNCC 2 cut(s) 272, 614
BmiI GGNNCC 2 cut(s) 413, 990
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 2 cut(s) 444, 483
BpiI GAAGAC 2 cut(s) 1041, 1245
BpuEI CTTGAG 1 cut(s) 251
BsaBI GATNNNNATC 2 cut(s) 744, 1221
BsaHI GRCGYC 1 cut(s) 1179
BsaJI CCNNGG 5 cut(s) 170, 415, 541, 984, 1055
BsaWI WCCGGW 1 cut(s) 1030
Bsc4I CCNNNNNNNGG 2 cut(s) 756, 1061
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 3 cut(s) 94, 761, 1233
Bse21I CCTNAGG 2 cut(s) 576, 1200
Bse3DI GCAATG 3 cut(s) 510, 946, 1156
Bse8I GATNNNNATC 2 cut(s) 744, 1221
BseAI TCCGGA 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 5 cut(s) 170, 415, 541, 984, 1055
BseGI GGATG 3 cut(s) 493, 818, 1099
BseJI GATNNNNATC 2 cut(s) 744, 1221
BseLI CCNNNNNNNGG 2 cut(s) 756, 1061
BseMI GCAATG 3 cut(s) 510, 946, 1156
BseMII CTCAG 2 cut(s) 567, 909
BseNI ACTGG 3 cut(s) 94, 761, 1233
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 2 cut(s) 938, 994
BsgI GTGCAG 2 cut(s) 45, 846
BshFI GGCC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 2 cut(s) 770, 1031
BslFI GGGAC 3 cut(s) 559, 794, 884
BslI CCNNNNNNNGG 2 cut(s) 756, 1061
BsmAI GTCTC 2 cut(s) 380, 1203
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 3 cut(s) 559, 794, 884
BsmI GAATGC 2 cut(s) 344, 367
BsnI GGCC 1 cut(s) 574
BsoBI CYCGRG 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 331, 687
Bsp13I TCCGGA 1 cut(s) 1030
Bsp143I GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 4 cut(s) 839, 923, 1005, 1226
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 2 cut(s) 568, 908
BspEI TCCGGA 1 cut(s) 1030
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 413, 990
BspPI GGATC 5 cut(s) 179, 427, 519, 740, 911
BsrDI GCAATG 3 cut(s) 510, 946, 1156
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 3 cut(s) 94, 761, 1233
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 5 cut(s) 170, 415, 541, 984, 1055
BssMI GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
BssNI GRCGYC 1 cut(s) 1179
BssT1I CCWWGG 4 cut(s) 170, 541, 984, 1055
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 6 cut(s) 286, 475, 484, 956, 1023, 1283
BstACI GRCGYC 1 cut(s) 1179
BstC8I GCNNGC 1 cut(s) 1142
BstDEI CTNAG 4 cut(s) 576, 895, 1200, 1259
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 1059
BstF5I GGATG 3 cut(s) 493, 818, 1099
BstH2I RGCGCY 1 cut(s) 1277
BstHHI GCGC 2 cut(s) 931, 1276
BstKTI GATC 7 cut(s) 187, 422, 514, 748, 919, 1191, 1219
BstMAI GTCTC 2 cut(s) 380, 1203
BstMBI GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
BstMWI GCNNNNNNNGC 4 cut(s) 10, 221, 1004, 1158
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 4 cut(s) 407, 467, 586, 1292
BstSCI CCNGG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 938, 994
BstV2I GAAGAC 2 cut(s) 1041, 1245
BstXI CCANNNNNNTGG 1 cut(s) 1056
Bsu36I CCTNAGG 2 cut(s) 576, 1200
BsuI GTATCC 2 cut(s) 771, 1233
BsuRI GGCC 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 493, 818, 1099
BtsIMutI CAGTG 2 cut(s) 489, 1240
Cac8I GCNNGC 1 cut(s) 1142
CaiI CAGNNNCTG 1 cut(s) 1117
CciI TCATGA 1 cut(s) 40
CfoI GCGC 2 cut(s) 931, 1276
Cfr10I RCCGGY 1 cut(s) 769
Cfr13I GGNCC 2 cut(s) 272, 614
CseI GACGC 1 cut(s) 1168
CspCI CAANNNNNGTGG 2 cut(s) 1219, 1254
DdeI CTNAG 4 cut(s) 576, 895, 1200, 1259
DpnI GATC 7 cut(s) 186, 421, 513, 747, 918, 1190, 1218
DpnII GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
EciI GGCGGA 1 cut(s) 1215
Eco130I CCWWGG 4 cut(s) 170, 541, 984, 1055
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 272, 614
Eco57I CTGAAG 1 cut(s) 555
Eco81I CCTNAGG 2 cut(s) 576, 1200
Eco88I CYCGRG 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 1059
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 4 cut(s) 170, 541, 984, 1055
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 4 cut(s) 170, 541, 984, 1055
Esp3I CGTCTC 1 cut(s) 380
FaqI GGGAC 3 cut(s) 559, 794, 884
FbaI TGATCA 1 cut(s) 1216
Fnu4HI GCNGC 3 cut(s) 924, 927, 1008
FokI GGATG 3 cut(s) 500, 805, 1086
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 3 cut(s) 924, 927, 1008
FspBI CTAG 3 cut(s) 180, 648, 716
GlaI GCGC 2 cut(s) 930, 1275
GluI GCNGC 3 cut(s) 924, 927, 1008
HaeII RGCGCY 1 cut(s) 1277
HaeIII GGCC 1 cut(s) 574
HapII CCGG 2 cut(s) 770, 1031
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 2 cut(s) 931, 1276
Hin1I GRCGYC 1 cut(s) 1179
Hin6I GCGC 2 cut(s) 929, 1274
HinP1I GCGC 2 cut(s) 929, 1274
HincII GTYRAC 2 cut(s) 706, 832
HindII GTYRAC 2 cut(s) 706, 832
HinfI GANTC 9 cut(s) 260, 308, 547, 740, 784, 874, 967, 1114, 1250
HpaI GTTAAC 1 cut(s) 832
HpaII CCGG 2 cut(s) 770, 1031
HphI GGTGA 4 cut(s) 104, 317, 530, 1216
Hpy166II GTNNAC 4 cut(s) 177, 706, 832, 1109
Hpy188I TCNGA 6 cut(s) 272, 424, 745, 777, 966, 1119
Hpy188III TCNNGA 7 cut(s) 41, 137, 764, 914, 971, 1031, 1247
Hpy8I GTNNAC 4 cut(s) 177, 706, 832, 1109
HpyCH4III ACNGT 6 cut(s) 286, 475, 484, 956, 1023, 1283
HpyCH4IV ACGT 2 cut(s) 387, 565
HpyCH4V TGCA 9 cut(s) 62, 194, 344, 457, 790, 863, 939, 1010, 1174
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 221, 1004, 1158
HpyF3I CTNAG 4 cut(s) 576, 895, 1200, 1259
HpySE526I ACGT 2 cut(s) 387, 565
Hsp92I GRCGYC 1 cut(s) 1179
HspAI GCGC 2 cut(s) 929, 1274
Kpn2I TCCGGA 1 cut(s) 1030
Ksp22I TGATCA 1 cut(s) 1216
KspAI GTTAAC 1 cut(s) 832
Kzo9I GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
LmnI GCTCC 3 cut(s) 110, 973, 1033
Lsp1109I GCAGC 2 cut(s) 938, 994
LweI GCATC 2 cut(s) 444, 483
MaeI CTAG 3 cut(s) 180, 648, 716
MaeII ACGT 2 cut(s) 387, 565
MaeIII GTNAC 2 cut(s) 82, 352
MalI GATC 7 cut(s) 186, 421, 513, 747, 918, 1190, 1218
MboI GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
MboII GAAGA 4 cut(s) 158, 308, 1046, 1245
MfeI CAATTG 1 cut(s) 869
MhlI GDGCHC 2 cut(s) 331, 687
MluCI AATT 8 cut(s) 16, 34, 103, 248, 425, 869, 933, 1167
MlyI GAGTC 2 cut(s) 541, 1259
MmeI TCCRAC 2 cut(s) 902, 1016
MnlI CCTC 8 cut(s) 226, 571, 596, 826, 836, 904, 1055, 1163
MroI TCCGGA 1 cut(s) 1030
MseI TTAA 4 cut(s) 102, 594, 665, 831
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 3 cut(s) 841, 923, 1007
MspI CCGG 2 cut(s) 770, 1031
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 1 cut(s) 869
Mva1269I GAATGC 2 cut(s) 344, 367
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 10, 221, 1004, 1158
NcoI CCATGG 1 cut(s) 170
NdeII GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
NlaIV GGNNCC 2 cut(s) 413, 990
NmeAIII GCCGAG 1 cut(s) 666
NspI RCATGY 4 cut(s) 407, 467, 586, 1292
PagI TCATGA 1 cut(s) 40
PceI AGGCCT 1 cut(s) 574
PciI ACATGT 2 cut(s) 403, 463
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 2 cut(s) 344, 367
PfeI GAWTC 7 cut(s) 260, 308, 740, 784, 874, 967, 1114
PflMI CCANNNNNTGG 1 cut(s) 756
PkrI GCNGC 3 cut(s) 925, 928, 1009
PleI GAGTC 2 cut(s) 541, 1258
PpsI GAGTC 2 cut(s) 541, 1258
PscI ACATGT 2 cut(s) 403, 463
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 413, 990
PspPI GGNCC 2 cut(s) 272, 614
PstNI CAGNNNCTG 1 cut(s) 1117
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 4 cut(s) 102, 594, 665, 831
SatI GCNGC 3 cut(s) 924, 927, 1008
Sau3AI GATC 7 cut(s) 184, 419, 511, 745, 916, 1188, 1216
Sau96I GGNCC 2 cut(s) 272, 614
SchI GAGTC 2 cut(s) 541, 1259
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 331, 687
SfaNI GCATC 2 cut(s) 444, 483
SinI GGWCC 2 cut(s) 272, 614
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 8 cut(s) 16, 34, 103, 248, 425, 869, 933, 1167
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 4 cut(s) 839, 923, 1005, 1226
SspMI CTAG 3 cut(s) 180, 648, 716
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 4 cut(s) 170, 541, 984, 1055
TaaI ACNGT 6 cut(s) 286, 475, 484, 956, 1023, 1283
TaiI ACGT 2 cut(s) 390, 568
TaqI TCGA 1 cut(s) 138
TasI AATT 8 cut(s) 16, 34, 103, 248, 425, 869, 933, 1167
TauI GCSGC 1 cut(s) 926
TfiI GAWTC 7 cut(s) 260, 308, 740, 784, 874, 967, 1114
Tru1I TTAA 4 cut(s) 102, 594, 665, 831
Tru9I TTAA 4 cut(s) 102, 594, 665, 831
TscAI CASTG 2 cut(s) 489, 1240
TseI GCWGC 2 cut(s) 926, 1007
TspDTI ATGAA 3 cut(s) 57, 1068, 1088
TspGWI ACGGA 3 cut(s) 362, 524, 716
TspRI CASTG 2 cut(s) 489, 1240
Van91I CCANNNNNTGG 1 cut(s) 756
VpaK11BI GGWCC 2 cut(s) 272, 614
VspI ATTAAT 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 1059
XapI RAATTY 2 cut(s) 425, 933
XceI RCATGY 4 cut(s) 407, 467, 586, 1292
XspI CTAG 3 cut(s) 180, 648, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.