Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003952.1

Orthogroup ID

OG0020311

Physical Location & Seq

Genomic Coordinates Reverse (-)

10160 .. 11657

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003952.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgggcgaggtggttcttccagcagtgcaacactgcatcagttcgatggctgttttccagcaaactatgaacgattttcataacaatttcatggaggagattcgtcgggaatactgctcaaattttccaactactgcaacccctacatacagtggtccatggtatgctccagccgatcctacacttccaagcccttggaggggtttaattgatggctcatcgggttcattgtactactggaatcctgaaactcaccagacccagtatgagaggccatgtcaacaagctcctcaatatccaccgaccttcacttcctcagattactccgttcactcaaaccctcaaccatacgcctccgataaccaccacggtgcagcaaagcagtccaaagctgacaagctcatgttcttctactttgacgtggtagaatcacttccaacagagccactggattccagtgattggaaatcactgcatagctgttatgatgcacaaatttcagtttttgagtccaatctacagacaaagttgggggctgccaaagtattcatggttggatctggtgcactcggaagtgagttgttaaaaaatgttcccctgatgggagtttcaggtggcaaccaggggaagctaacaaccactgatgatgatgtaattgagaagagtaacctcaataggcagttcctcttctgtgattggaagactaggcaggcaaaatatacaattaccgcttctgctgctgcaccaataaatccctgtctcaacattgtagctttgcagaatggagttggccctgaaagtgagactctgtttgatgacacttactcgctttatgttgaccaaaggtgcttatatttccagaagacagttcttgagtcaggtactcttcgtgcaaaatgcaacactcaagtggttattcctcacgtaatagaaaatgatggtaactcgagagatcttccagagaagcaagcacccatgtgtactgtgcactcatttccatacaacattgacaactatttgacatgggctcgatctgagtttgcgggtttgctggagaaaactccacctaaaatgcatgcacttttatccaagccaagtgaaaatactgctgcagtgagcaatgctggggatgcacaggccaggtataccttggagcctgttctggagtacctggccagagaaagatgcgaaacattccaagattgtatttcctgggcaagtgaaaaatgttacccgactgaagtctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

416

Amino Acids

46.45

Weight (kDa)

5.05

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020311)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33711 FvH4_5g30251
rosa_multiflora	Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011
rosa_roxburghii	Rroxscaffold_2G00106470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	2 cut(s)	729, 1043
AclWI	GGATC	2 cut(s)	170, 565
AcoI	YGGCCR	1 cut(s)	1173
AcsI	RAATTY	2 cut(s)	121, 495
AfaI	GTAC	4 cut(s)	233, 883, 982, 1169
AfiI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	4 cut(s)	621, 1139, 1170, 1211
AleI	CACNNNNGTG	3 cut(s)	369, 908, 976
AluBI	AGCT	6 cut(s)	287, 392, 400, 480, 631, 773
AluI	AGCT	6 cut(s)	287, 392, 400, 480, 631, 773
Alw21I	GWGCWC	2 cut(s)	568, 990
Alw26I	GTCTC	2 cut(s)	764, 797
Alw44I	GTGCAC	2 cut(s)	564, 986
AlwI	GGATC	2 cut(s)	170, 565
Ama87I	CYCGRG	1 cut(s)	946
AoxI	GGCC	4 cut(s)	272, 790, 1137, 1173
ApaLI	GTGCAC	2 cut(s)	564, 986
ApeKI	GCWGC	5 cut(s)	374, 536, 737, 740, 1109
ApoI	RAATTY	2 cut(s)	121, 495
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	155, 791
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	946
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	568, 990
BalI	TGGCCA	1 cut(s)	1175
BanII	GRGCYC	1 cut(s)	1030
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
BbsI	GAAGAC	2 cut(s)	707, 869
Bbv12I	GWGCWC	2 cut(s)	568, 990
BbvI	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BccI	CCATC	4 cut(s)	40, 206, 595, 932
BciT130I	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BcoDI	GTCTC	2 cut(s)	764, 797
BfaI	CTAG	1 cut(s)	705
BfmI	CTRYAG	2 cut(s)	518, 1110
BglII	AGATCT	1 cut(s)	952
BisI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
BlsI	GCNGC	5 cut(s)	376, 538, 739, 742, 1111
Bme1390I	CCNGG	4 cut(s)	623, 1141, 1172, 1213
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	155, 791
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	4 cut(s)	623, 1141, 1172, 1213
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	4 cut(s)	45, 478, 1120, 1175
BmuI	ACTGGG	1 cut(s)	256
BoxI	GACNNNNGTC	1 cut(s)	1241
BpiI	GAAGAC	2 cut(s)	707, 869
BpmI	CTGGAG	3 cut(s)	153, 1073, 1184
BpuEI	CTTGAG	2 cut(s)	891, 893
BsaAI	YACGTR	1 cut(s)	925
BsaJI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
Bse1I	ACTGG	4 cut(s)	242, 262, 453, 456
Bse3DI	GCAATG	1 cut(s)	1126
BseBI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BseDI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
BseGI	GGATG	1 cut(s)	1135
BseLI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	2 cut(s)	330, 1026
BseNI	ACTGG	4 cut(s)	242, 262, 453, 456
BseRI	GAGGAG	2 cut(s)	110, 279
BseSI	GKGCMC	2 cut(s)	568, 990
BseXI	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	2 cut(s)	393, 726
BshFI	GGCC	4 cut(s)	274, 792, 1139, 1175
BsiHKAI	GWGCWC	2 cut(s)	568, 990
BsiHKCI	CYCGRG	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
BsmAI	GTCTC	2 cut(s)	764, 797
BsnI	GGCC	4 cut(s)	274, 792, 1139, 1175
BsoBI	CYCGRG	1 cut(s)	946
Bsp1286I	GDGCHC	3 cut(s)	568, 990, 1030
Bsp143I	GATC	4 cut(s)	175, 557, 952, 1031
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	2 cut(s)	729, 1043
BspANI	GGCC	4 cut(s)	274, 792, 1139, 1175
BspCNI	CTCAG	2 cut(s)	329, 1027
BspHI	TCATGA	1 cut(s)	1247
BspLI	GGNNCC	1 cut(s)	1155
BspMAI	CTGCAG	1 cut(s)	1114
BspPI	GGATC	2 cut(s)	170, 565
BsrDI	GCAATG	1 cut(s)	1126
BsrI	ACTGG	4 cut(s)	242, 262, 453, 456
BssECI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
BssMI	GATC	4 cut(s)	175, 557, 952, 1031
BssNAI	GTATAC	1 cut(s)	1146
BssT1I	CCWWGG	3 cut(s)	158, 194, 1149
Bst1107I	GTATAC	1 cut(s)	1146
Bst2UI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
Bst4CI	ACNGT	4 cut(s)	152, 371, 868, 985
Bst6I	CTCTTC	3 cut(s)	656, 692, 891
BstBAI	YACGTR	1 cut(s)	925
BstC8I	GCNNGC	3 cut(s)	711, 969, 1077
BstDEI	CTNAG	2 cut(s)	316, 1035
BstDSI	CCRYGG	2 cut(s)	158, 367
BstF5I	GGATG	1 cut(s)	1135
BstKTI	GATC	4 cut(s)	178, 560, 955, 1034
BstMAI	GTCTC	2 cut(s)	764, 797
BstMBI	GATC	4 cut(s)	175, 557, 952, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 1130
BstNI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BstNSI	RCATGY	1 cut(s)	1079
BstPAI	GACNNNNGTC	1 cut(s)	1241
BstSCI	CCNGG	4 cut(s)	621, 1139, 1170, 1211
BstSFI	CTRYAG	2 cut(s)	518, 1110
BstSLI	GKGCMC	2 cut(s)	568, 990
BstV1I	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BstV2I	GAAGAC	2 cut(s)	707, 869
BstX2I	RGATCY	2 cut(s)	557, 952
BstXI	CCANNNNNNTGG	1 cut(s)	195
BstYI	RGATCY	2 cut(s)	557, 952
BstZ17I	GTATAC	1 cut(s)	1146
BsuRI	GGCC	4 cut(s)	274, 792, 1139, 1175
BtgI	CCRYGG	2 cut(s)	158, 367
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	1135
BtsI	GCAGTG	4 cut(s)	30, 31, 470, 1119
BtsIMutI	CAGTG	8 cut(s)	30, 31, 157, 446, 463, 470, 639, 1119
Cac8I	GCNNGC	3 cut(s)	711, 969, 1077
CciI	TCATGA	1 cut(s)	1247
Cfr13I	GGNCC	2 cut(s)	155, 791
Csp6I	GTAC	4 cut(s)	232, 882, 981, 1168
CviAII	CATG	9 cut(s)	91, 159, 276, 403, 550, 976, 1023, 1076, 1248
CviQI	GTAC	4 cut(s)	232, 882, 981, 1168
DdeI	CTNAG	2 cut(s)	316, 1035
DpnI	GATC	4 cut(s)	177, 559, 954, 1033
DpnII	GATC	4 cut(s)	175, 557, 952, 1031
EaeI	YGGCCR	1 cut(s)	1173
Eam1104I	CTCTTC	3 cut(s)	656, 692, 891
EarI	CTCTTC	3 cut(s)	656, 692, 891
Eco130I	CCWWGG	3 cut(s)	158, 194, 1149
Eco24I	GRGCYC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	946
EcoRII	CCWGG	4 cut(s)	621, 1139, 1170, 1211
EcoT14I	CCWWGG	3 cut(s)	158, 194, 1149
EcoT22I	ATGCAT	1 cut(s)	1077
EcoT38I	GRGCYC	1 cut(s)	1030
ErhI	CCWWGG	3 cut(s)	158, 194, 1149
FaeI	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
FatI	CATG	9 cut(s)	90, 158, 275, 402, 549, 975, 1022, 1075, 1247
FauI	CCCGC	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
FokI	GGATG	1 cut(s)	1142
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
GsaI	CCCAGC	1 cut(s)	1128
GsuI	CTGGAG	3 cut(s)	153, 1073, 1184
HaeIII	GGCC	4 cut(s)	274, 792, 1139, 1175
Hin1II	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
HincII	GTYRAC	2 cut(s)	281, 838
HindII	GTYRAC	2 cut(s)	281, 838
HinfI	GANTC	7 cut(s)	100, 241, 428, 452, 509, 805, 875
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	7 cut(s)	281, 331, 566, 838, 981, 988, 1146
Hpy188I	TCNGA	4 cut(s)	319, 358, 572, 1036
Hpy188III	TCNNGA	8 cut(s)	107, 245, 859, 872, 948, 959, 1163, 1248
Hpy8I	GTNNAC	7 cut(s)	281, 331, 566, 838, 981, 988, 1146
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	4 cut(s)	152, 371, 868, 985
HpyCH4IV	ACGT	2 cut(s)	420, 924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 1130
HpyF3I	CTNAG	2 cut(s)	316, 1035
HpySE526I	ACGT	2 cut(s)	420, 924
Hsp92II	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
Kzo9I	GATC	4 cut(s)	175, 557, 952, 1031
LmnI	GCTCC	3 cut(s)	172, 292, 1153
Lsp1109I	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
LweI	GCATC	4 cut(s)	45, 478, 1120, 1175
MaeI	CTAG	1 cut(s)	705
MaeII	ACGT	2 cut(s)	420, 924
MaeIII	GTNAC	3 cut(s)	665, 941, 1229
MalI	GATC	4 cut(s)	177, 559, 954, 1033
MboI	GATC	4 cut(s)	175, 557, 952, 1031
MboII	GAAGA	8 cut(s)	8, 400, 673, 679, 712, 874, 878, 947
MflI	RGATCY	2 cut(s)	557, 952
MhlI	GDGCHC	3 cut(s)	568, 990, 1030
MlsI	TGGCCA	1 cut(s)	1175
MluCI	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
MluNI	TGGCCA	1 cut(s)	1175
MlyI	GAGTC	3 cut(s)	518, 799, 884
MmeI	TCCRAC	3 cut(s)	152, 461, 535
Mox20I	TGGCCA	1 cut(s)	1175
Mph1103I	ATGCAT	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	1175
MseI	TTAA	2 cut(s)	206, 584
MslI	CAYNNNNRTG	3 cut(s)	369, 908, 976
Msp20I	TGGCCA	1 cut(s)	1175
MspR9I	CCNGG	4 cut(s)	623, 1141, 1172, 1213
MvaI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
MwoI	GCNNNNNNNGC	2 cut(s)	737, 1130
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	4 cut(s)	175, 557, 952, 1031
NlaIII	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
NlaIV	GGNNCC	1 cut(s)	1155
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	1 cut(s)	1079
OliI	CACNNNNGTG	3 cut(s)	369, 908, 976
PaeI	GCATGC	1 cut(s)	1079
PaeR7I	CTCGAG	1 cut(s)	946
PagI	TCATGA	1 cut(s)	1247
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	100, 241, 428, 452
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	376, 538, 739, 742, 1111
PleI	GAGTC	3 cut(s)	517, 799, 883
PpsI	GAGTC	3 cut(s)	517, 799, 883
Ppu21I	YACGTR	1 cut(s)	925
PshAI	GACNNNNGTC	1 cut(s)	1241
Psp6I	CCWGG	4 cut(s)	621, 1139, 1170, 1211
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	4 cut(s)	621, 1139, 1170, 1211
PspN4I	GGNNCC	1 cut(s)	1155
PspPI	GGNCC	2 cut(s)	155, 791
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	2 cut(s)	557, 952
RsaI	GTAC	4 cut(s)	233, 883, 982, 1169
RsaNI	GTAC	4 cut(s)	232, 882, 981, 1168
RseI	CAYNNNNRTG	3 cut(s)	369, 908, 976
SaqAI	TTAA	2 cut(s)	206, 584
SatI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
Sau3AI	GATC	4 cut(s)	175, 557, 952, 1031
Sau96I	GGNCC	2 cut(s)	155, 791
SchI	GAGTC	3 cut(s)	518, 799, 884
ScrFI	CCNGG	4 cut(s)	623, 1141, 1172, 1213
SduI	GDGCHC	3 cut(s)	568, 990, 1030
SfaNI	GCATC	4 cut(s)	45, 478, 1120, 1175
SfcI	CTRYAG	2 cut(s)	518, 1110
Sfr274I	CTCGAG	1 cut(s)	946
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	946
SmiMI	CAYNNNNRTG	3 cut(s)	369, 908, 976
SmlI	CTYRAG	3 cut(s)	872, 906, 946
SmoI	CTYRAG	3 cut(s)	872, 906, 946
SphI	GCATGC	1 cut(s)	1079
Sse9I	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
SsiI	CCGC	2 cut(s)	729, 1043
SspMI	CTAG	1 cut(s)	705
StyD4I	CCNGG	4 cut(s)	621, 1139, 1170, 1211
StyI	CCWWGG	3 cut(s)	158, 194, 1149
TaaI	ACNGT	4 cut(s)	152, 371, 868, 985
TaiI	ACGT	2 cut(s)	423, 927
TaqI	TCGA	3 cut(s)	44, 947, 1030
TasI	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
TatI	WGTACW	2 cut(s)	231, 980
TfiI	GAWTC	4 cut(s)	100, 241, 428, 452
Tru1I	TTAA	2 cut(s)	206, 584
Tru9I	TTAA	2 cut(s)	206, 584
TscAI	CASTG	8 cut(s)	30, 38, 157, 453, 463, 477, 646, 1119
TseI	GCWGC	5 cut(s)	374, 536, 737, 740, 1109
TspDTI	ATGAA	5 cut(s)	68, 79, 83, 216, 538
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	8 cut(s)	30, 38, 157, 453, 463, 477, 646, 1119
Van91I	CCANNNNNTGG	1 cut(s)	462
VneI	GTGCAC	2 cut(s)	564, 986
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	121, 495
XceI	RCATGY	1 cut(s)	1079
XcmI	CCANNNNNNNNNTGG	2 cut(s)	547, 1147
XhoI	CTCGAG	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.