Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009850.1

Orthogroup ID

OG0020311

Physical Location & Seq

Genomic Coordinates Reverse (-)

72076 .. 75066

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009850.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggaggacttctcaggctgcccaattcacaagtcacactcccagctttcatcactatctgttgacgctcaaagtttgaagaaacagattgatgaaccttcgagtttttctgatgcacctgcccagtcaatgactagggttttgtatactgagaaaaatgtgttggcacataggttcatcaaaaacttggtgggactctctagtttgtctgttgaagaggatgatgtcggtaacgtatttggtctatgggaaggctctaatccagagcttacggccgttgtgataggttcttacattgatgccatcccatactctgaagcacgagcactctatgtcggcaataggaagtgcattggtcctagttgtgaaagctatgaaggctatggagtagaagttgcagaggtgatgattaaagcagtgaaagagagtggaatggtttcagctgaagaattatgggctcatttcccttgtcttacatgtttaaggcatgaggaaatgcctttattcaaggggggaggaatgttaggactattgtgctacaattatctgttactttgggctaatgtgttgattttcctaaatgggctgcctactggactcgggccgggtcatgttgtaagtggaggaatttgcaatgatatgacgacaggagttttgaaggatcttatcgcgcaaaatcttccacaaatcatctttctttgtgcgacaaagataagtcaactccaagactttcaagatctgcatcgtgccctagggtttctccattctaaggagtttttaagtgagggacaggctaggagactcggattattctggatgaacgaagttgatcttcatgttcggtttcgaggtgcaaaatctacttggtggaacttcgacacacaactacgtttagacaaagcagtatgcacgctggtgtggtgtgatatttttggttatgcaaaggatgtgtggcagactgatattgtgaggatccctatgtataaggttgttgggaaaatctctcttactagagttgcctcagataaatggcagaaactcacctttaaggttcgtcagcagcaaatgctaggcatacgttcaagattagaagaattaactaagatggctaatgttgaagtgattcaggaagagaagaaaagtctaatggacaggttgcattctcttctatttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

392

Amino Acids

44.09

Weight (kDa)

6.23

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020311)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33711 FvH4_5g30251
rosa_multiflora	Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011
rosa_roxburghii	Rroxscaffold_2G00106470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	671
AclWI	GGATC	3 cut(s)	669, 967, 980
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	336, 465
AfiI	CCNNNNNNNGG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	8 cut(s)	79, 215, 508, 658, 734, 1083, 1118, 1175
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AleI	CACNNNNGTG	1 cut(s)	914
AluBI	AGCT	4 cut(s)	46, 268, 372, 443
AluI	AGCT	4 cut(s)	46, 268, 372, 443
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	793
AlwI	GGATC	3 cut(s)	669, 967, 980
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	2 cut(s)	273, 602
ApeKI	GCWGC	3 cut(s)	18, 586, 1060
ApoI	RAATTY	1 cut(s)	627
ArsI	GACNNNNNNTTYG	4 cut(s)	124, 156, 637, 669
Asp700I	GAANNNNTTC	2 cut(s)	436, 1122
AspA2I	CCTAGG	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	356, 602
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	415, 1033
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	972
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	5, 573, 1072
BccI	CCATC	2 cut(s)	311, 1099
BceAI	ACGGC	2 cut(s)	260, 288
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	7 cut(s)	135, 201, 360, 752, 795, 1011, 1070
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	3 cut(s)	19, 587, 1061
BlnI	CCTAGG	1 cut(s)	751
BlsI	GCNGC	3 cut(s)	20, 588, 1062
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	356, 602
BmiI	GGNNCC	1 cut(s)	974
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	103, 289, 751
BmuI	ACTGGG	1 cut(s)	118
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	2 cut(s)	124, 598
Bse3DI	GCAATG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	4 cut(s)	226, 303, 822, 952
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	27, 141, 1035
BseNI	ACTGG	2 cut(s)	124, 598
BseSI	GKGCMC	1 cut(s)	751
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	5, 573, 1072
BseYI	CCCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	671
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	275, 604
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	2 cut(s)	207, 801
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	793
BsmFI	GGGAC	2 cut(s)	207, 801
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	2 cut(s)	275, 604
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	328, 460, 751
Bsp143I	GATC	4 cut(s)	661, 736, 829, 972
BspANI	GGCC	2 cut(s)	275, 604
BspCNI	CTCAG	3 cut(s)	26, 142, 1034
BspFNI	CGCG	1 cut(s)	671
BspLI	GGNNCC	1 cut(s)	974
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	3 cut(s)	669, 967, 980
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	124, 598
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	4 cut(s)	661, 736, 829, 972
BssNAI	GTATAC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	751
Bst1107I	GTATAC	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	321
Bst6I	CTCTTC	3 cut(s)	210, 1125, 1170
BstAPI	GCANNNNNTGC	1 cut(s)	1066
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	5 cut(s)	13, 150, 768, 1021, 1101
BstF5I	GGATG	4 cut(s)	226, 303, 822, 952
BstFNI	CGCG	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	4 cut(s)	664, 739, 832, 975
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	4 cut(s)	661, 736, 829, 972
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 1066
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	604
BstSLI	GKGCMC	1 cut(s)	751
BstUI	CGCG	1 cut(s)	671
BstV1I	GCAGC	3 cut(s)	5, 573, 1072
BstX2I	RGATCY	3 cut(s)	661, 736, 972
BstYI	RGATCY	3 cut(s)	661, 736, 972
BstZ17I	GTATAC	1 cut(s)	147
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	275, 604
BtsCI	GGATG	4 cut(s)	226, 303, 822, 952
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	911
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	356, 602
CseI	GACGC	1 cut(s)	74
CviAII	CATG	4 cut(s)	477, 488, 611, 836
DdeI	CTNAG	5 cut(s)	13, 150, 768, 1021, 1101
DpnI	GATC	4 cut(s)	663, 738, 831, 974
DpnII	GATC	4 cut(s)	661, 736, 829, 972
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	3 cut(s)	210, 1125, 1170
EarI	CTCTTC	3 cut(s)	210, 1125, 1170
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	336, 465
Eco88I	CYCGRG	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	4 cut(s)	480, 491, 614, 839
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	2 cut(s)	207, 801
FatI	CATG	4 cut(s)	476, 487, 610, 835
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	19, 587, 1061
FokI	GGATG	4 cut(s)	233, 290, 829, 959
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	19, 587, 1061
FspBI	CTAG	7 cut(s)	135, 201, 360, 752, 795, 1011, 1070
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	3 cut(s)	19, 587, 1061
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	275, 604
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	4 cut(s)	480, 491, 614, 839
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	2 cut(s)	64, 719
HindII	GTYRAC	2 cut(s)	64, 719
HinfI	GANTC	4 cut(s)	195, 597, 801, 1123
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	415, 1033
Hpy166II	GTNNAC	3 cut(s)	64, 147, 719
Hpy188I	TCNGA	4 cut(s)	112, 316, 806, 1024
Hpy188III	TCNNGA	5 cut(s)	263, 734, 814, 1083, 1127
Hpy8I	GTNNAC	3 cut(s)	64, 147, 719
HpyAV	CCTTC	4 cut(s)	108, 245, 371, 652
HpyCH4IV	ACGT	3 cut(s)	234, 889, 1078
HpyCH4V	TGCA	9 cut(s)	116, 351, 398, 633, 742, 854, 909, 941, 1159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 1066
HpyF3I	CTNAG	5 cut(s)	13, 150, 768, 1021, 1101
HpySE526I	ACGT	3 cut(s)	234, 889, 1078
Hsp92II	CATG	4 cut(s)	480, 491, 614, 839
HspAI	GCGC	1 cut(s)	671
Kzo9I	GATC	4 cut(s)	661, 736, 829, 972
Lsp1109I	GCAGC	3 cut(s)	5, 573, 1072
LweI	GCATC	3 cut(s)	103, 289, 751
MaeI	CTAG	7 cut(s)	135, 201, 360, 752, 795, 1011, 1070
MaeII	ACGT	3 cut(s)	234, 889, 1078
MaeIII	GTNAC	3 cut(s)	33, 230, 549
MalI	GATC	4 cut(s)	663, 738, 831, 974
MboI	GATC	4 cut(s)	661, 736, 829, 972
MboII	GAAGA	9 cut(s)	91, 227, 458, 671, 824, 1103, 1142, 1147, 1157
MflI	RGATCY	3 cut(s)	661, 736, 972
MhlI	GDGCHC	3 cut(s)	328, 460, 751
MluCI	AATT	5 cut(s)	24, 449, 541, 627, 1094
MlyI	GAGTC	3 cut(s)	189, 591, 795
MnlI	CCTC	9 cut(s)	211, 394, 484, 509, 617, 778, 842, 963, 1030
MroXI	GAANNNNTTC	2 cut(s)	436, 1122
MseI	TTAA	5 cut(s)	411, 482, 779, 1047, 1097
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	1159
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	378, 1066
NciI	CCSGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	661, 736, 829, 972
NlaIII	CATG	4 cut(s)	480, 491, 614, 839
NlaIV	GGNNCC	1 cut(s)	974
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	480
OliI	CACNNNNGTG	1 cut(s)	914
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	476
PctI	GAATGC	1 cut(s)	1159
PdmI	GAANNNNTTC	2 cut(s)	436, 1122
PfeI	GAWTC	1 cut(s)	1123
PkrI	GCNGC	3 cut(s)	20, 588, 1062
PleI	GAGTC	3 cut(s)	189, 591, 795
PpsI	GAGTC	3 cut(s)	189, 591, 795
PscI	ACATGT	1 cut(s)	476
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	974
PspPI	GGNCC	2 cut(s)	356, 602
PsuI	RGATCY	3 cut(s)	661, 736, 972
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	914
SaqAI	TTAA	5 cut(s)	411, 482, 779, 1047, 1097
SatI	GCNGC	3 cut(s)	19, 587, 1061
Sau3AI	GATC	4 cut(s)	661, 736, 829, 972
Sau96I	GGNCC	2 cut(s)	356, 602
SchI	GAGTC	3 cut(s)	189, 591, 795
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	3 cut(s)	328, 460, 751
SfaNI	GCATC	3 cut(s)	103, 289, 751
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	914
Sse9I	AATT	5 cut(s)	24, 449, 541, 627, 1094
SspMI	CTAG	7 cut(s)	135, 201, 360, 752, 795, 1011, 1070
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	751
TaiI	ACGT	3 cut(s)	237, 892, 1081
TaqI	TCGA	3 cut(s)	101, 847, 876
TasI	AATT	5 cut(s)	24, 449, 541, 627, 1094
TfiI	GAWTC	1 cut(s)	1123
Tru1I	TTAA	5 cut(s)	411, 482, 779, 1047, 1097
Tru9I	TTAA	5 cut(s)	411, 482, 779, 1047, 1097
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	18, 586, 1060
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	6 cut(s)	39, 108, 166, 390, 824, 833
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	480
XmaJI	CCTAGG	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	436, 1122
XspI	CTAG	7 cut(s)	135, 201, 360, 752, 795, 1011, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.