Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016852.1

Orthogroup ID

OG0020311

Physical Location & Seq

Genomic Coordinates Forward (+)

38157 .. 39557

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016852.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgagaggccatgtcaacaagctcctcaatatccaccgaccttcacttcctcagattactccgttcactcaaaccctcaaccatacgcctctgataaccaccacggtatcaatcttccatttacccaccctacaaattcccacccttacaatgttgcttcgatttaccccaaccctcaccatcaatctcaacatgatatatgctccattatggtatctttcattgttcacttccattgttcctaatgctgtactttggttgggatatttgcgattggattgtaattcgggatggaatcttatgattacgaacaatgagaccacacactctgttcttgccatgatttgccaaggtgcagcaaagcagtccaaagctgacaagctcatgttcttctactttgacgtggtagaatcacttccaacagagccactggattccagtgattggaaatcactgcatagctgttatgatgcacaaatttcagtttttgagtccaatctacagacaaagttgggggctgccaaagtattcatggttggatctggtgcactcggaagtgagttgttaaaaaatgttcccctgatgggagtttcaggtggcaaccaggggaatctaacaaccactgatgatgatgatgtaattgagaagagtaacctcagtaggcagttcctcttctgtgattggaagactaggcaggcaaaatatacaattaccgcttctgctgctgcaccaataaatccctgtcttaacattgtagctttgcagaatggagttggccctgaaagtgagactctgtttgatgacacttactcgctttatgttgaccaaaggtgcttatatttccagaagacagttcttgagtcaggtactcttcgtgcaaaatgcaacactcaagtggttattcctcacgtaatagaaaatgatggtaactcgagagatcttccagagaagcaagcacccatgtgtactgtgcactcatttccatacaacattgacaactatttgacatgggctcgatctgagtttgcgggtttgctggagaaaactccacctaaaatgcatgcacttttatccaagccaagtgaaaatactgctgcagtgagcaatgctagggatgcacaggccaggtataccttggagcctgttctggagtacctggccagagaaagatgcaaaacattccaagattgtatttcctgggcaagtgaaaaatgttacccgactgaagtctcatgggcttatttcccgattcttacatttttaaggcctgagggcatgccttattttaaggggggaggaatgttaggacactcttacatattgtcttgggctaatgtgttgaactatctaaatgagctgcatttccatcttgggctctatatcgggtcgggtcagctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

466

Amino Acids

52.23

Weight (kDa)

6.18

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020311)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33711 FvH4_5g30251
rosa_multiflora	Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011
rosa_roxburghii	Rroxscaffold_2G00106470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	1130
AciI	CCGC	2 cut(s)	714, 1028
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	1158
AcsI	RAATTY	2 cut(s)	135, 477
AcuI	CTGAAG	1 cut(s)	1245
AfaI	GTAC	4 cut(s)	252, 868, 967, 1154
AfiI	CCNNNNNNNGG	2 cut(s)	444, 584
AgsI	TTSAA	1 cut(s)	1342
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	4 cut(s)	603, 1124, 1155, 1196
AleI	CACNNNNGTG	2 cut(s)	893, 961
AluBI	AGCT	7 cut(s)	22, 374, 382, 462, 758, 1357, 1396
AluI	AGCT	7 cut(s)	22, 374, 382, 462, 758, 1357, 1396
Alw21I	GWGCWC	2 cut(s)	550, 975
Alw26I	GTCTC	3 cut(s)	311, 782, 1234
Alw44I	GTGCAC	2 cut(s)	546, 971
AlwI	GGATC	1 cut(s)	547
Ama87I	CYCGRG	1 cut(s)	931
AoxI	GGCC	5 cut(s)	7, 775, 1122, 1158, 1265
ApaLI	GTGCAC	2 cut(s)	546, 971
ApeKI	GCWGC	6 cut(s)	356, 518, 722, 725, 1094, 1357
ApoI	RAATTY	2 cut(s)	135, 477
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	931
AxyI	CCTNAGG	1 cut(s)	1269
BaeGI	GKGCMC	2 cut(s)	550, 975
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	1160
BanII	GRGCYC	2 cut(s)	1015, 1377
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BbsI	GAAGAC	2 cut(s)	692, 854
Bbv12I	GWGCWC	2 cut(s)	550, 975
BbvI	GCAGC	6 cut(s)	368, 505, 709, 712, 1081, 1344
BccI	CCATC	5 cut(s)	188, 285, 577, 917, 1374
BciT130I	CCWGG	4 cut(s)	605, 1126, 1157, 1198
BcoDI	GTCTC	3 cut(s)	311, 782, 1234
BfaI	CTAG	2 cut(s)	690, 1110
BfmI	CTRYAG	2 cut(s)	500, 1095
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	6 cut(s)	357, 519, 723, 726, 1095, 1358
BlsI	GCNGC	6 cut(s)	358, 520, 724, 727, 1096, 1359
Bme1390I	CCNGG	4 cut(s)	605, 1126, 1157, 1198
BmeT110I	CYCGRG	1 cut(s)	931
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	1 cut(s)	1140
BmrFI	CCNGG	4 cut(s)	605, 1126, 1157, 1198
BmsI	GCATC	3 cut(s)	460, 1105, 1160
BoxI	GACNNNNGTC	1 cut(s)	1226
BpiI	GAAGAC	2 cut(s)	692, 854
BpmI	CTGGAG	2 cut(s)	1058, 1169
BpuEI	CTTGAG	2 cut(s)	876, 878
BsaAI	YACGTR	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	5 cut(s)	102, 349, 604, 1134, 1197
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 584
Bse1I	ACTGG	2 cut(s)	435, 438
Bse21I	CCTNAGG	1 cut(s)	1269
Bse3DI	GCAATG	1 cut(s)	1111
BseBI	CCWGG	4 cut(s)	605, 1126, 1157, 1198
BseDI	CCNNGG	5 cut(s)	102, 349, 604, 1134, 1197
BseGI	GGATG	2 cut(s)	296, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	444, 584
BseMI	GCAATG	1 cut(s)	1111
BseMII	CTCAG	4 cut(s)	65, 670, 1011, 1260
BseNI	ACTGG	2 cut(s)	435, 438
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	2 cut(s)	550, 975
BseXI	GCAGC	6 cut(s)	368, 505, 709, 712, 1081, 1344
BsgI	GTGCAG	2 cut(s)	375, 711
BshFI	GGCC	5 cut(s)	9, 777, 1124, 1160, 1267
BsiHKAI	GWGCWC	2 cut(s)	550, 975
BsiHKCI	CYCGRG	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	444, 584
BsmAI	GTCTC	3 cut(s)	311, 782, 1234
BsnI	GGCC	5 cut(s)	9, 777, 1124, 1160, 1267
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	931
Bsp1286I	GDGCHC	4 cut(s)	550, 975, 1015, 1377
Bsp143I	GATC	3 cut(s)	539, 937, 1016
BspACI	CCGC	2 cut(s)	714, 1028
BspANI	GGCC	5 cut(s)	9, 777, 1124, 1160, 1267
BspCNI	CTCAG	4 cut(s)	64, 669, 1012, 1261
BspLI	GGNNCC	1 cut(s)	1140
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	1111
BsrI	ACTGG	2 cut(s)	435, 438
BssECI	CCNNGG	5 cut(s)	102, 349, 604, 1134, 1197
BssMI	GATC	3 cut(s)	539, 937, 1016
BssNAI	GTATAC	1 cut(s)	1131
BssT1I	CCWWGG	2 cut(s)	349, 1134
Bst1107I	GTATAC	1 cut(s)	1131
Bst2UI	CCWGG	4 cut(s)	605, 1126, 1157, 1198
Bst4CI	ACNGT	3 cut(s)	106, 853, 970
Bst6I	CTCTTC	3 cut(s)	641, 677, 876
BstBAI	YACGTR	1 cut(s)	910
BstC8I	GCNNGC	4 cut(s)	696, 954, 1062, 1277
BstDEI	CTNAG	4 cut(s)	51, 656, 1020, 1269
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	296, 1120
BstKTI	GATC	3 cut(s)	542, 940, 1019
BstMAI	GTCTC	3 cut(s)	311, 782, 1234
BstMBI	GATC	3 cut(s)	539, 937, 1016
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 1115
BstNI	CCWGG	4 cut(s)	605, 1126, 1157, 1198
BstNSI	RCATGY	2 cut(s)	1064, 1279
BstPAI	GACNNNNGTC	1 cut(s)	1226
BstSCI	CCNGG	4 cut(s)	603, 1124, 1155, 1196
BstSFI	CTRYAG	2 cut(s)	500, 1095
BstSLI	GKGCMC	2 cut(s)	550, 975
BstV1I	GCAGC	6 cut(s)	368, 505, 709, 712, 1081, 1344
BstV2I	GAAGAC	2 cut(s)	692, 854
BstX2I	RGATCY	2 cut(s)	539, 937
BstYI	RGATCY	2 cut(s)	539, 937
BstZ17I	GTATAC	1 cut(s)	1131
Bsu36I	CCTNAGG	1 cut(s)	1269
BsuRI	GGCC	5 cut(s)	9, 777, 1124, 1160, 1267
BtgI	CCRYGG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	296, 1120
BtsI	GCAGTG	2 cut(s)	452, 1104
BtsIMutI	CAGTG	5 cut(s)	428, 445, 452, 621, 1104
Cac8I	GCNNGC	4 cut(s)	696, 954, 1062, 1277
Cfr13I	GGNCC	1 cut(s)	776
Csp6I	GTAC	4 cut(s)	251, 867, 966, 1153
CviQI	GTAC	4 cut(s)	251, 867, 966, 1153
DdeI	CTNAG	4 cut(s)	51, 656, 1020, 1269
DpnI	GATC	3 cut(s)	541, 939, 1018
DpnII	GATC	3 cut(s)	539, 937, 1016
EaeI	YGGCCR	1 cut(s)	1158
Eam1104I	CTCTTC	3 cut(s)	641, 677, 876
EarI	CTCTTC	3 cut(s)	641, 677, 876
Eco130I	CCWWGG	2 cut(s)	349, 1134
Eco147I	AGGCCT	1 cut(s)	1267
Eco24I	GRGCYC	2 cut(s)	1015, 1377
Eco31I	GGTCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	1245
Eco81I	CCTNAGG	1 cut(s)	1269
Eco88I	CYCGRG	1 cut(s)	931
EcoRII	CCWGG	4 cut(s)	603, 1124, 1155, 1196
EcoT14I	CCWWGG	2 cut(s)	349, 1134
EcoT22I	ATGCAT	1 cut(s)	1062
EcoT38I	GRGCYC	2 cut(s)	1015, 1377
ErhI	CCWWGG	2 cut(s)	349, 1134
FauI	CCCGC	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	1130
Fnu4HI	GCNGC	6 cut(s)	357, 519, 723, 726, 1095, 1358
FokI	GGATG	2 cut(s)	303, 1127
FriOI	GRGCYC	2 cut(s)	1015, 1377
Fsp4HI	GCNGC	6 cut(s)	357, 519, 723, 726, 1095, 1358
FspBI	CTAG	2 cut(s)	690, 1110
GluI	GCNGC	6 cut(s)	357, 519, 723, 726, 1095, 1358
GsuI	CTGGAG	2 cut(s)	1058, 1169
HaeIII	GGCC	5 cut(s)	9, 777, 1124, 1160, 1267
HincII	GTYRAC	2 cut(s)	16, 823
HindII	GTYRAC	2 cut(s)	16, 823
HinfI	GANTC	8 cut(s)	295, 410, 434, 491, 610, 790, 860, 1249
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	8 cut(s)	16, 66, 228, 548, 823, 966, 973, 1131
Hpy188I	TCNGA	4 cut(s)	54, 93, 554, 1021
Hpy188III	TCNNGA	7 cut(s)	288, 844, 857, 933, 944, 1148, 1246
Hpy8I	GTNNAC	8 cut(s)	16, 66, 228, 548, 823, 966, 973, 1131
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	3 cut(s)	106, 853, 970
HpyCH4IV	ACGT	2 cut(s)	402, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 1115
HpyF3I	CTNAG	4 cut(s)	51, 656, 1020, 1269
HpySE526I	ACGT	2 cut(s)	402, 909
Kzo9I	GATC	3 cut(s)	539, 937, 1016
LmnI	GCTCC	3 cut(s)	27, 208, 1138
Lsp1109I	GCAGC	6 cut(s)	368, 505, 709, 712, 1081, 1344
LweI	GCATC	3 cut(s)	460, 1105, 1160
MaeI	CTAG	2 cut(s)	690, 1110
MaeII	ACGT	2 cut(s)	402, 909
MaeIII	GTNAC	3 cut(s)	650, 926, 1214
MalI	GATC	3 cut(s)	541, 939, 1018
MboI	GATC	3 cut(s)	539, 937, 1016
MboII	GAAGA	8 cut(s)	106, 382, 658, 664, 697, 859, 863, 932
MflI	RGATCY	2 cut(s)	539, 937
MhlI	GDGCHC	4 cut(s)	550, 975, 1015, 1377
MlsI	TGGCCA	1 cut(s)	1160
MluCI	AATT	5 cut(s)	135, 283, 477, 639, 708
MluNI	TGGCCA	1 cut(s)	1160
MlyI	GAGTC	3 cut(s)	500, 784, 869
MmeI	TCCRAC	2 cut(s)	443, 517
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	1 cut(s)	1062
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	4 cut(s)	566, 747, 1262, 1287
MslI	CAYNNNNRTG	2 cut(s)	893, 961
Msp20I	TGGCCA	1 cut(s)	1160
MspR9I	CCNGG	4 cut(s)	605, 1126, 1157, 1198
MvaI	CCWGG	4 cut(s)	605, 1126, 1157, 1198
MwoI	GCNNNNNNNGC	2 cut(s)	722, 1115
NdeII	GATC	3 cut(s)	539, 937, 1016
NlaIV	GGNNCC	1 cut(s)	1140
NsiI	ATGCAT	1 cut(s)	1062
NspI	RCATGY	2 cut(s)	1064, 1279
OliI	CACNNNNGTG	2 cut(s)	893, 961
PaeI	GCATGC	2 cut(s)	1064, 1279
PaeR7I	CTCGAG	1 cut(s)	931
PceI	AGGCCT	1 cut(s)	1267
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	5 cut(s)	295, 410, 434, 610, 1249
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	6 cut(s)	358, 520, 724, 727, 1096, 1359
PleI	GAGTC	3 cut(s)	499, 784, 868
PpsI	GAGTC	3 cut(s)	499, 784, 868
Ppu21I	YACGTR	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	1226
Psp6I	CCWGG	4 cut(s)	603, 1124, 1155, 1196
PspGI	CCWGG	4 cut(s)	603, 1124, 1155, 1196
PspN4I	GGNNCC	1 cut(s)	1140
PspPI	GGNCC	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	539, 937
RsaI	GTAC	4 cut(s)	252, 868, 967, 1154
RsaNI	GTAC	4 cut(s)	251, 867, 966, 1153
RseI	CAYNNNNRTG	2 cut(s)	893, 961
SaqAI	TTAA	4 cut(s)	566, 747, 1262, 1287
SatI	GCNGC	6 cut(s)	357, 519, 723, 726, 1095, 1358
Sau3AI	GATC	3 cut(s)	539, 937, 1016
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	3 cut(s)	500, 784, 869
ScrFI	CCNGG	4 cut(s)	605, 1126, 1157, 1198
SduI	GDGCHC	4 cut(s)	550, 975, 1015, 1377
SfaNI	GCATC	3 cut(s)	460, 1105, 1160
SfcI	CTRYAG	2 cut(s)	500, 1095
Sfr274I	CTCGAG	1 cut(s)	931
SlaI	CTCGAG	1 cut(s)	931
SmiMI	CAYNNNNRTG	2 cut(s)	893, 961
SmlI	CTYRAG	3 cut(s)	857, 891, 931
SmoI	CTYRAG	3 cut(s)	857, 891, 931
SphI	GCATGC	2 cut(s)	1064, 1279
Sse9I	AATT	5 cut(s)	135, 283, 477, 639, 708
SseBI	AGGCCT	1 cut(s)	1267
SsiI	CCGC	2 cut(s)	714, 1028
SspMI	CTAG	2 cut(s)	690, 1110
StuI	AGGCCT	1 cut(s)	1267
StyD4I	CCNGG	4 cut(s)	603, 1124, 1155, 1196
StyI	CCWWGG	2 cut(s)	349, 1134
TaaI	ACNGT	3 cut(s)	106, 853, 970
TaiI	ACGT	2 cut(s)	405, 912
TaqI	TCGA	3 cut(s)	160, 932, 1015
TasI	AATT	5 cut(s)	135, 283, 477, 639, 708
TatI	WGTACW	2 cut(s)	250, 965
TfiI	GAWTC	5 cut(s)	295, 410, 434, 610, 1249
Tru1I	TTAA	4 cut(s)	566, 747, 1262, 1287
Tru9I	TTAA	4 cut(s)	566, 747, 1262, 1287
TscAI	CASTG	5 cut(s)	435, 445, 459, 628, 1104
TseI	GCWGC	6 cut(s)	356, 518, 722, 725, 1094, 1357
TspDTI	ATGAA	2 cut(s)	210, 520
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	5 cut(s)	435, 445, 459, 628, 1104
Van91I	CCANNNNNTGG	1 cut(s)	444
VneI	GTGCAC	2 cut(s)	546, 971
XapI	RAATTY	2 cut(s)	135, 477
XceI	RCATGY	2 cut(s)	1064, 1279
XcmI	CCANNNNNNNNNTGG	2 cut(s)	529, 1132
XhoI	CTCGAG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	2 cut(s)	690, 1110
Zsp2I	ATGCAT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.