Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019688

Physical Location & Seq

Genomic Coordinates Reverse (-)

29904626 .. 29907091

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAGCATTTGAGCTTGAAGTCGAGCTATGTGAGACTAGGCTGACACTTGTGAAGGAGACAGATCATAGTAAGGCCAAGGATTTAAAGATAGCTATGTTGAACATGGAGTTGAAGCATGAGAGGGAAATAAAAAGGCAAGCTAAAGACTCATTTAAAGTTCAGATTAAGGCCAAGGACTTAAAGATAGCTGATTTAAACATGGAGCTGAAGCATGAGAGGATGAAGAAGATCAAACGAGATTGGTGGTTATGGGGTACAGTTGCTACTGCCCTGACCATTGGTGCAACATCCTTGGCATACTCAAATCCATCTAGAAGTACCTACCATCATACATCCTTTTTTGTGTTGGTCGGCATTTTTGATCAAGATCTTGATCAATCGGAGGTGGTTGCGTTCTTGAATCGGTTGCGTTGCGATTTTGAGAGGGTTAAGGGAGATAATGGGGTGGATATGTCGACGTCGCCGTCGGCGAGTATGAATTTGAGTATGGATTCGAGTAGTGGGAAGGGGAAGAGAATGGTGATGGCGCTGCTGCTAGGGAACCATAGGTTGAAGAAGAAGAAAAGATTGTCTGGGGTAGTGAATGGGGAGGTGTGCAAAGATGTGATGTGTGAGGATGGGAGGGATTTTGTAATGCCGATGAGGCTAAACATCAGCCAGCGAAACATCGGCGAGCTAAAGCACTGGCGAAGCACCGCATCGGTATGTGACGAGGCCTTAACACCGACGAAGCCACGTCGGTCATCGTCACCGCCCGATCATACTGTCACATCTCCGACCAGATCTCCTCCTCCCTCTCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

30.48

Weight (kDa)

9.31

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34460 FvH4_3g34470 FvH4_3g34490 FvH4_3g34510 FvH4_3g34520 FvH4_3g34530
rosa_multiflora	Rmu_sc0001733.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AatII	GACGTC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	2 cut(s)	699, 755
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	2 cut(s)	259, 322
AgsI	TTSAA	5 cut(s)	20, 103, 115, 403, 556
AjiI	CACGTC	1 cut(s)	740
AluBI	AGCT	7 cut(s)	16, 28, 95, 143, 191, 208, 679
AluI	AGCT	7 cut(s)	16, 28, 95, 143, 191, 208, 679
Alw26I	GTCTC	2 cut(s)	29, 53
AoxI	GGCC	3 cut(s)	75, 171, 717
ApeKI	GCWGC	2 cut(s)	532, 535
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	535, 744
BbvI	GCAGC	2 cut(s)	519, 522
BccI	CCATC	4 cut(s)	319, 336, 520, 614
BceAI	ACGGC	1 cut(s)	451
BclI	TGATCA	2 cut(s)	364, 376
BcoDI	GTCTC	2 cut(s)	29, 53
BfaI	CTAG	3 cut(s)	39, 315, 539
BfoI	RGCGCY	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	646
BglII	AGATCT	2 cut(s)	370, 785
BisI	GCNGC	2 cut(s)	533, 536
BlsI	GCNGC	2 cut(s)	534, 537
BmgBI	CACGTC	1 cut(s)	740
BmiI	GGNNCC	1 cut(s)	545
BmsI	GCATC	1 cut(s)	710
BsaBI	GATNNNNATC	2 cut(s)	369, 375
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	78, 174, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bse1I	ACTGG	1 cut(s)	692
Bse8I	GATNNNNATC	2 cut(s)	369, 375
BseDI	CCNNGG	3 cut(s)	78, 174, 294
BseGI	GGATG	4 cut(s)	228, 290, 335, 625
BseJI	GATNNNNATC	2 cut(s)	369, 375
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	3 cut(s)	780, 783, 794
BseXI	GCAGC	2 cut(s)	519, 522
BshFI	GGCC	3 cut(s)	77, 173, 719
BsmAI	GTCTC	2 cut(s)	29, 53
BsnI	GGCC	3 cut(s)	77, 173, 719
Bsp143I	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
BspACI	CCGC	2 cut(s)	699, 755
BspANI	GGCC	3 cut(s)	77, 173, 719
BspLI	GGNNCC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	3 cut(s)	78, 174, 294
BssMI	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	3 cut(s)	78, 174, 294
Bst4CI	ACNGT	2 cut(s)	262, 769
Bst6I	CTCTTC	1 cut(s)	509
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	141, 662, 677
BstF5I	GGATG	4 cut(s)	228, 290, 335, 625
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	7 cut(s)	67, 234, 367, 373, 379, 763, 788
BstMAI	GTCTC	2 cut(s)	29, 53
BstMBI	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	519, 522
BstX2I	RGATCY	2 cut(s)	370, 785
BstYI	RGATCY	2 cut(s)	370, 785
BsuRI	GGCC	3 cut(s)	77, 173, 719
BtrI	CACGTC	1 cut(s)	740
BtsCI	GGATG	4 cut(s)	228, 290, 335, 625
BtsIMutI	CAGTG	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	141, 662, 677
CfoI	GCGC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	258, 321
CviAII	CATG	4 cut(s)	106, 119, 202, 215
CviQI	GTAC	2 cut(s)	258, 321
DpnI	GATC	7 cut(s)	66, 233, 366, 372, 378, 762, 787
DpnII	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
DraI	TTTAAA	3 cut(s)	87, 157, 198
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	3 cut(s)	78, 174, 294
Eco147I	AGGCCT	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	230
EcoT14I	CCWWGG	3 cut(s)	78, 174, 294
ErhI	CCWWGG	3 cut(s)	78, 174, 294
FaeI	CATG	4 cut(s)	109, 122, 205, 218
FatI	CATG	4 cut(s)	105, 118, 201, 214
FbaI	TGATCA	2 cut(s)	364, 376
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	533, 536
FokI	GGATG	4 cut(s)	235, 277, 322, 632
Fsp4HI	GCNGC	2 cut(s)	533, 536
FspBI	CTAG	3 cut(s)	39, 315, 539
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	2 cut(s)	533, 536
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	77, 173, 719
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	109, 122, 205, 218
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	149, 403, 494
HphI	GGTGA	2 cut(s)	535, 744
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	4 cut(s)	165, 385, 780, 809
Hpy188III	TCNNGA	4 cut(s)	315, 368, 374, 400
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	5 cut(s)	463, 466, 472, 733, 744
HpyAV	CCTTC	2 cut(s)	49, 502
HpyCH4III	ACNGT	2 cut(s)	262, 769
HpyCH4IV	ACGT	2 cut(s)	461, 739
HpyCH4V	TGCA	2 cut(s)	287, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpySE526I	ACGT	2 cut(s)	461, 739
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	109, 122, 205, 218
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	2 cut(s)	364, 376
Kzo9I	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	287, 561, 673, 674, 796
Lsp1109I	GCAGC	2 cut(s)	519, 522
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	3 cut(s)	39, 315, 539
MaeII	ACGT	2 cut(s)	461, 739
MaeIII	GTNAC	3 cut(s)	710, 750, 769
MalI	GATC	7 cut(s)	66, 233, 366, 372, 378, 762, 787
MboI	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
MboII	GAAGA	6 cut(s)	238, 241, 526, 568, 571, 574
MflI	RGATCY	2 cut(s)	370, 785
MluCI	AATT	1 cut(s)	481
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	803
MseI	TTAA	7 cut(s)	86, 156, 168, 182, 197, 432, 722
MslI	CAYNNNNRTG	1 cut(s)	706
MwoI	GCNNNNNNNGC	1 cut(s)	646
NdeII	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
NlaIII	CATG	4 cut(s)	109, 122, 205, 218
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	3 cut(s)	710, 750, 769
PceI	AGGCCT	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	2 cut(s)	464, 470
PfeI	GAWTC	2 cut(s)	403, 494
PkrI	GCNGC	2 cut(s)	534, 537
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	370, 785
RsaI	GTAC	2 cut(s)	259, 322
RsaNI	GTAC	2 cut(s)	258, 321
RseI	CAYNNNNRTG	1 cut(s)	706
SalI	GTCGAC	1 cut(s)	457
SaqAI	TTAA	7 cut(s)	86, 156, 168, 182, 197, 432, 722
SatI	GCNGC	2 cut(s)	533, 536
Sau3AI	GATC	7 cut(s)	64, 231, 364, 370, 376, 760, 785
SchI	GAGTC	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	706
Sse9I	AATT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	2 cut(s)	699, 755
SspMI	CTAG	3 cut(s)	39, 315, 539
StuI	AGGCCT	1 cut(s)	719
StyI	CCWWGG	3 cut(s)	78, 174, 294
TaaI	ACNGT	2 cut(s)	262, 769
TaiI	ACGT	2 cut(s)	464, 742
TaqI	TCGA	3 cut(s)	24, 458, 497
TaqII	GACCGA	1 cut(s)	732
TasI	AATT	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	403, 494
Tru1I	TTAA	7 cut(s)	86, 156, 168, 182, 197, 432, 722
Tru9I	TTAA	7 cut(s)	86, 156, 168, 182, 197, 432, 722
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	3 cut(s)	710, 750, 769
TseI	GCWGC	2 cut(s)	532, 535
Tsp45I	GTSAC	3 cut(s)	710, 750, 769
TspDTI	ATGAA	2 cut(s)	239, 494
TspRI	CASTG	1 cut(s)	692
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	3 cut(s)	39, 315, 539
ZraI	GACGTC	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.