Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019688

Physical Location & Seq

Genomic Coordinates Reverse (-)

29908179 .. 29910963

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGCTGAAGCATGAGAGAGAAATAAAAAGGAAAGCTAATGACTCCTTTAAAGTTCAGATTAAGGCCAAGGACTTAAACAGAGATGATTTAAACATGGAGCTGAAGCATATGAGGGAAATAAAAAGGCAAACTGAAGACTCTTTTAAAGTTCAGATTAAGGCGAAGAACTTAAAGATAGCTGATTTAAACATGAAGCTGAAACATGAGAGTGAAATAAAAAGGCAAGTTGAAGACTCTTTTAAAGTTCAGATTAAGGAGCCATATGCGGTGAACAACCCGAAAGGGTATACCAAGACACTCGGACAAGAAGGTGTGGTTGTGAAGATCGGAACAACAATCGGAGGAGGTGCTATAAGAGAAGTGGCGGCGTACTTGCTCGACCACCCTCTTAGAGGACCACCTCACAACACCCACAATATCGGTTTCGCAGGGATGGCACCAACCATCATACAAGAAGCAGAAATAGCTAGTGAGGCCTCATTTATGAAAACGGTGTCATCCAACATGGATCAACACATTGCCAACACATTTGGTGACCTTCAGCCATGGAAGGGTGAACCGGGTGAGGAGAAACTTGGGGGCATAAATCGTTCAACCATGGAAGCATCTGAGCTTGAAGCCGATCTATGTGAGACTAGGCTGACACTTGTGAAGGAGACAGATACGAGTAAGGCCAAAGATTTAACGATAGTAGATTTGAACATGGAGCTGAAGCATGAGAGAGAAATAAAAAGGAAAATTAAAGACTCCTTTAAAGTTCAGATTAAGGGCAAGGACTTAAAAATAGCTGATTTAAACATGGAGCGGAAGCATGAGAGGGAAATAAAAAGGCAAGCTGAAGACTCTTTTAAAGTTCAGATTAAGGCTATGAATTTAAAGCCATATGCGTTGAACAACCCGAATGGGTACATCAAGACACTCGGACAAGAAGGTGTGGTTGCGAAGATCAGAACGACAATTAGAGGAGGTGCTATAAGAGAAGTGGCGGCGTACTTGCTCGACCACCCACTTAGAGGACCACCTCACAACACCCACAATATCGATGTGGGACGCTGTGAAGATATGGGGACGTCTGGCTTTCGGGATCATGACCCGCACAAGATCAATCAGCTTGACAATAGGTTGTCCAACACAGATAGAAACTTGGGCAACATTTTGAGGTCAAAGACCATCTATTGGGGACCATGGCTACTGCCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

402

Amino Acids

45.49

Weight (kDa)

9.19

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34460 FvH4_3g34470 FvH4_3g34490 FvH4_3g34510 FvH4_3g34520 FvH4_3g34530
rosa_multiflora	Rmu_sc0001733.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1076
AccB1I	GGYRCC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	1179
AccBSI	CCGCTC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	5 cut(s)	269, 368, 808, 989, 1097
AclWI	GGATC	2 cut(s)	519, 1095
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	6 cut(s)	29, 125, 156, 527, 734, 861
AcyI	GRCGYC	1 cut(s)	1073
AfaI	GTAC	3 cut(s)	374, 911, 995
AfiI	CCNNNNNNNGG	4 cut(s)	395, 554, 1016, 1179
AgsI	TTSAA	5 cut(s)	233, 597, 620, 703, 895
Alw26I	GTCTC	2 cut(s)	629, 653
AlwI	GGATC	2 cut(s)	519, 1095
AoxI	GGCC	3 cut(s)	66, 477, 675
ApoI	RAATTY	1 cut(s)	874
AspS9I	GGNCC	3 cut(s)	398, 1019, 1184
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	283, 548, 569, 578
AvaII	GGWCC	3 cut(s)	398, 1019, 1184
BanI	GGYRCC	1 cut(s)	439
BbsI	GAAGAC	3 cut(s)	144, 240, 849
BccI	CCATC	3 cut(s)	430, 455, 1181
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	629, 653
BfaI	CTAG	2 cut(s)	471, 639
BisI	GCNGC	2 cut(s)	369, 990
BlsI	GCNGC	2 cut(s)	370, 991
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	3 cut(s)	398, 1019, 1184
BmgT120I	GGNCC	3 cut(s)	398, 1019, 1184
BmiI	GGNNCC	3 cut(s)	261, 441, 1185
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	1 cut(s)	617
BpiI	GAAGAC	3 cut(s)	144, 240, 849
BpuMI	CCSGG	1 cut(s)	564
Bsa29I	ATCGAT	1 cut(s)	1044
BsaHI	GRCGYC	1 cut(s)	1073
BsaJI	CCNNGG	4 cut(s)	69, 548, 600, 1187
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 554, 1016, 1179
Bse3DI	GCAATG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	4 cut(s)	69, 548, 600, 1187
BseGI	GGATG	2 cut(s)	441, 500
BseLI	CCNNNNNNNGG	4 cut(s)	395, 554, 1016, 1179
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	3 cut(s)	360, 584, 981
BshFI	GGCC	3 cut(s)	68, 479, 677
BshNI	GGYRCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	1044
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	3 cut(s)	1065, 1084, 1197
BslI	CCNNNNNNNGG	4 cut(s)	395, 554, 1016, 1179
BsmAI	GTCTC	2 cut(s)	629, 653
BsmFI	GGGAC	3 cut(s)	1065, 1084, 1197
BsnI	GGCC	3 cut(s)	68, 479, 677
Bsp143I	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
Bsp19I	CCATGG	3 cut(s)	548, 600, 1187
BspACI	CCGC	5 cut(s)	269, 368, 808, 989, 1097
BspANI	GGCC	3 cut(s)	68, 479, 677
BspCNI	CTCAG	1 cut(s)	604
BspDI	ATCGAT	1 cut(s)	1044
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	3 cut(s)	261, 441, 1185
BspPI	GGATC	2 cut(s)	519, 1095
BspT107I	GGYRCC	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	519
BssECI	CCNNGG	4 cut(s)	69, 548, 600, 1187
BssMI	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
BssNAI	GTATAC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	1073
BssT1I	CCWWGG	4 cut(s)	69, 548, 600, 1187
Bst1107I	GTATAC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	1073
BstC8I	GCNNGC	2 cut(s)	837, 1200
BstDEI	CTNAG	3 cut(s)	392, 612, 1013
BstDSI	CCRYGG	3 cut(s)	548, 600, 1187
BstEII	GGTNACC	1 cut(s)	536
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	441, 500
BstKTI	GATC	6 cut(s)	330, 514, 628, 951, 1090, 1107
BstMAI	GTCTC	2 cut(s)	629, 653
BstMBI	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 467, 476
BstPI	GGTNACC	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	562
BstV2I	GAAGAC	3 cut(s)	144, 240, 849
BstZ17I	GTATAC	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	68, 479, 677
BsuTUI	ATCGAT	1 cut(s)	1044
BtgI	CCRYGG	3 cut(s)	548, 600, 1187
BtsCI	GGATG	2 cut(s)	441, 500
Cac8I	GCNNGC	2 cut(s)	837, 1200
CciI	TCATGA	1 cut(s)	1090
Cfr13I	GGNCC	3 cut(s)	398, 1019, 1184
ClaI	ATCGAT	1 cut(s)	1044
CseI	GACGC	1 cut(s)	1062
Csp6I	GTAC	3 cut(s)	373, 910, 994
CviQI	GTAC	3 cut(s)	373, 910, 994
DdeI	CTNAG	3 cut(s)	392, 612, 1013
DpnI	GATC	6 cut(s)	329, 513, 627, 950, 1089, 1106
DpnII	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
DraI	TTTAAA	9 cut(s)	52, 93, 148, 189, 244, 757, 798, 853, 879
Eco130I	CCWWGG	4 cut(s)	69, 548, 600, 1187
Eco147I	AGGCCT	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	398, 1019, 1184
Eco57I	CTGAAG	6 cut(s)	29, 125, 156, 527, 734, 861
Eco91I	GGTNACC	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	536
EcoT14I	CCWWGG	4 cut(s)	69, 548, 600, 1187
ErhI	CCWWGG	4 cut(s)	69, 548, 600, 1187
FaqI	GGGAC	3 cut(s)	1065, 1084, 1197
FauI	CCCGC	1 cut(s)	1104
FauNDI	CATATG	3 cut(s)	111, 265, 886
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	369, 990
FokI	GGATG	2 cut(s)	448, 487
Fsp4HI	GCNGC	2 cut(s)	369, 990
FspBI	CTAG	2 cut(s)	471, 639
GluI	GCNGC	2 cut(s)	369, 990
HaeIII	GGCC	3 cut(s)	68, 479, 677
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	1062
Hin1I	GRCGYC	1 cut(s)	1073
HinfI	GANTC	5 cut(s)	44, 140, 236, 749, 845
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	4 cut(s)	283, 548, 569, 578
Hpy166II	GTNNAC	3 cut(s)	274, 291, 560
Hpy188III	TCNNGA	3 cut(s)	916, 1085, 1091
Hpy8I	GTNNAC	3 cut(s)	274, 291, 560
HpyAV	CCTTC	5 cut(s)	305, 547, 551, 649, 926
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 467, 476
HpyF3I	CTNAG	3 cut(s)	392, 612, 1013
HpySE526I	ACGT	1 cut(s)	1073
Hsp92I	GRCGYC	1 cut(s)	1073
Kzo9I	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
LmnI	GCTCC	5 cut(s)	4, 100, 259, 709, 805
LpnPI	CCDG	3 cut(s)	417, 576, 1062
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	2 cut(s)	471, 639
MaeII	ACGT	1 cut(s)	1073
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	6 cut(s)	329, 513, 627, 950, 1089, 1106
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
MboII	GAAGA	7 cut(s)	149, 178, 245, 337, 854, 958, 1073
MluCI	AATT	3 cut(s)	741, 874, 960
MlyI	GAGTC	5 cut(s)	38, 134, 230, 743, 839
MmeI	TCCRAC	2 cut(s)	528, 1155
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	437, 467, 476
NciI	CCSGG	1 cut(s)	564
NcoI	CCATGG	3 cut(s)	548, 600, 1187
NdeI	CATATG	3 cut(s)	111, 265, 886
NdeII	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
NlaIV	GGNNCC	3 cut(s)	261, 441, 1185
NmuCI	GTSAC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	1179
PkrI	GCNGC	2 cut(s)	370, 991
PleI	GAGTC	5 cut(s)	38, 134, 230, 743, 839
PpsI	GAGTC	5 cut(s)	38, 134, 230, 743, 839
PspEI	GGTNACC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	261, 441, 1185
PspPI	GGNCC	3 cut(s)	398, 1019, 1184
RsaI	GTAC	3 cut(s)	374, 911, 995
RsaNI	GTAC	3 cut(s)	373, 910, 994
RseI	CAYNNNNRTG	1 cut(s)	210
SatI	GCNGC	2 cut(s)	369, 990
Sau3AI	GATC	6 cut(s)	327, 511, 625, 948, 1087, 1104
Sau96I	GGNCC	3 cut(s)	398, 1019, 1184
SchI	GAGTC	5 cut(s)	38, 134, 230, 743, 839
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	617
SinI	GGWCC	3 cut(s)	398, 1019, 1184
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	741, 874, 960
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	5 cut(s)	269, 368, 808, 989, 1097
SspMI	CTAG	2 cut(s)	471, 639
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	4 cut(s)	69, 548, 600, 1187
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	1076
TaqI	TCGA	3 cut(s)	381, 1002, 1044
TasI	AATT	3 cut(s)	741, 874, 960
TauI	GCSGC	2 cut(s)	371, 992
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	209, 503, 887
Van91I	CCANNNNNTGG	1 cut(s)	1179
VpaK11BI	GGWCC	3 cut(s)	398, 1019, 1184
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	471, 639
ZraI	GACGTC	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.