Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019688

Physical Location & Seq

Genomic Coordinates Reverse (-)

29911843 .. 29915227

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGCATATGAGCTTGAAGCCGAGCTATGTGAGACTATGCTGACACTTGTGAAGGAGACAGATCATAGTAAGGCCAAAGATTTAAAGATAGTAGATTTGAACATGGAGCTGAAGCAAGAGAGAGAAATAAAAAGGAAAGCTAAAGACTCCTTTAAAGTTCAGATTATGGCCAAGGACTTAAAGACAGCTGAGTTAAACATGGAGCTGAAGCATGTGAGGAAAATAAAAAGGCAAGCTGAAGACTCCTTTAAAGTCCATATTAAGGCCAAGGACTTAAAAATAGCTGATTTAAACATAGAGCTGAAGCATGAGAGGGAAATAAAAAGGCAAGCTGAAGACTCCTTTAAACCATATGCGGTGAACAACCCGAAAGGGTACACCAACACACTTGGACAAGAAGGTGTGGTTGCGAAGATCGGAACAACAATCGGAAGAGGTGCTATAAGAGAAGTGGCTGCGTACTTGCTCGACCACCCTCTTAGAAGACAACATCACAACACCCACAATATCGGTTTTGCAAGGATGGCACCACCCGTAATGATTAGGTGGCGCCTCCACAATGATTTCAATCATGGGGGAGATGAGGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

199

Amino Acids

22.9

Weight (kDa)

9.01

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34460 FvH4_3g34470 FvH4_3g34490 FvH4_3g34510 FvH4_3g34520 FvH4_3g34530
rosa_multiflora	Rmu_sc0001733.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	529, 552
AciI	CCGC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	5 cut(s)	134, 230, 261, 326, 357
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	2 cut(s)	380, 464
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	20, 103, 571
Alw26I	GTCTC	2 cut(s)	29, 53
AoxI	GGCC	3 cut(s)	75, 171, 267
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	529, 552
BbsI	GAAGAC	3 cut(s)	249, 345, 493
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	29, 53
BfoI	RGCGCY	1 cut(s)	556
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	531, 554
BpiI	GAAGAC	3 cut(s)	249, 345, 493
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	174, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	174, 270
BseGI	GGATG	1 cut(s)	531
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	3 cut(s)	77, 173, 269
BshNI	GGYRCC	2 cut(s)	529, 552
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	29, 53
BsnI	GGCC	3 cut(s)	77, 173, 269
Bsp143I	GATC	2 cut(s)	64, 417
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	3 cut(s)	77, 173, 269
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	531, 554
BspT107I	GGYRCC	2 cut(s)	529, 552
BssECI	CCNNGG	2 cut(s)	174, 270
BssMI	GATC	2 cut(s)	64, 417
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	2 cut(s)	174, 270
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	237, 333
BstDEI	CTNAG	2 cut(s)	192, 482
BstF5I	GGATG	1 cut(s)	531
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	67, 420
BstMAI	GTCTC	2 cut(s)	29, 53
BstMBI	GATC	2 cut(s)	64, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	3 cut(s)	249, 345, 493
BsuRI	GGCC	3 cut(s)	77, 173, 269
BtsCI	GGATG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	237, 333
CfoI	GCGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	379, 463
CviAII	CATG	5 cut(s)	106, 202, 215, 311, 575
CviQI	GTAC	2 cut(s)	379, 463
DdeI	CTNAG	2 cut(s)	192, 482
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	2 cut(s)	66, 419
DpnII	GATC	2 cut(s)	64, 417
DraI	TTTAAA	5 cut(s)	87, 157, 253, 294, 349
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	174, 270
Eco57I	CTGAAG	5 cut(s)	134, 230, 261, 326, 357
EcoT14I	CCWWGG	2 cut(s)	174, 270
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
ErhI	CCWWGG	2 cut(s)	174, 270
FaeI	CATG	5 cut(s)	109, 205, 218, 314, 578
FatI	CATG	5 cut(s)	105, 201, 214, 310, 574
FauNDI	CATATG	2 cut(s)	10, 355
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	77, 173, 269
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	109, 205, 218, 314, 578
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HinfI	GANTC	3 cut(s)	149, 245, 341
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	364, 381
Hpy188I	TCNGA	3 cut(s)	165, 422, 434
Hpy8I	GTNNAC	2 cut(s)	364, 381
HpyAV	CCTTC	2 cut(s)	49, 395
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	2 cut(s)	192, 482
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	5 cut(s)	109, 205, 218, 314, 578
HspAI	GCGC	1 cut(s)	553
KasI	GGCGCC	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	64, 417
LmnI	GCTCC	2 cut(s)	109, 205
Lsp1109I	GCAGC	1 cut(s)	445
MalI	GATC	2 cut(s)	66, 419
MboI	GATC	2 cut(s)	64, 417
MboII	GAAGA	5 cut(s)	254, 350, 427, 447, 498
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	553
MlyI	GAGTC	3 cut(s)	143, 239, 335
MnlI	CCTC	6 cut(s)	213, 309, 431, 489, 566, 580
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	9 cut(s)	86, 156, 182, 197, 252, 264, 278, 293, 348
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	527
NarI	GGCGCC	1 cut(s)	553
NdeI	CATATG	2 cut(s)	10, 355
NdeII	GATC	2 cut(s)	64, 417
NlaIII	CATG	5 cut(s)	109, 205, 218, 314, 578
NlaIV	GGNNCC	2 cut(s)	531, 554
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	3 cut(s)	143, 239, 335
PluTI	GGCGCC	1 cut(s)	556
PpsI	GAGTC	3 cut(s)	143, 239, 335
PspN4I	GGNNCC	2 cut(s)	531, 554
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	380, 464
RsaNI	GTAC	2 cut(s)	379, 463
SaqAI	TTAA	9 cut(s)	86, 156, 182, 197, 252, 264, 278, 293, 348
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	64, 417
SchI	GAGTC	3 cut(s)	143, 239, 335
SfoI	GGCGCC	1 cut(s)	554
SsiI	CCGC	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	552
StyI	CCWWGG	2 cut(s)	174, 270
TaqI	TCGA	1 cut(s)	471
Tru1I	TTAA	9 cut(s)	86, 156, 182, 197, 252, 264, 278, 293, 348
Tru9I	TTAA	9 cut(s)	86, 156, 182, 197, 252, 264, 278, 293, 348
TseI	GCWGC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.