Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019688

Physical Location & Seq

Genomic Coordinates Reverse (-)

29917381 .. 29918314

Gene Structure 934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTGTATGAGCTATACCGGATTTGTTGGCTTTGCAATGAAGTCCAATCATCTCATCATCATTGCAATTTCATCCTCAAGGGGCTTAGCCACCGCAGAAGAAGAACAACTCCTCGTTGTGCCTCTTATTGCCGATACAAAGTTTTATTTTTCAGTGATTAAGGAGCTTGTTCACAAGACCTCTCATGGTCTTCAAAGGCATAAGCCGCGCCTTGCAAAAGATGGAATTGGGGGAACTTATTCCATGTCGGATGCTTCTGATGGTGATAGATATGTGGTTATATTCAAACCTGTCGACGAAGAGCCATATGCGGTGAACAACCTGAAAGGGTACACCGTGCCACTTGGAGAAGAAGGTGTGGGTGCAAAGATCGGAACAACAATCGGAGGAGGTGCTATAAGAGAAGTGGCGGCGTACTTGCTCGACCACCCTCTTAGAGGACCACCTCACAACCCCCACGATATCGATTTCGCAGGGATGGCACCAACTGTAATGGTTAGGTGCCGCCTCCACAACGATTTCAATCATAGGGGAGGTGAGGAAATTGTTGGGAAAGAAGTGGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

190

Amino Acids

20.48

Weight (kDa)

6.29

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI3_PI4_kinase	PF00454	76 - 175	2.7e-06	Phosphatidylinositol 3- and 4-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34460 FvH4_3g34470 FvH4_3g34490 FvH4_3g34510 FvH4_3g34520 FvH4_3g34530
rosa_multiflora	Rmu_sc0001733.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	481, 501
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	208
AciI	CCGC	5 cut(s)	93, 206, 311, 410, 505
AfaI	GTAC	2 cut(s)	332, 416
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	194, 286, 523
AluBI	AGCT	2 cut(s)	12, 166
AluI	AGCT	2 cut(s)	12, 166
ApeKI	GCWGC	1 cut(s)	563
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	275, 325, 548
AvaII	GGWCC	1 cut(s)	440
BanI	GGYRCC	2 cut(s)	481, 501
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	215, 254, 472
BisI	GCNGC	4 cut(s)	206, 411, 505, 564
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	4 cut(s)	207, 412, 506, 565
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	483, 503
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse3DI	GCAATG	2 cut(s)	42, 60
Bse8I	GATNNNNATC	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	465
BseGI	GGATG	3 cut(s)	71, 256, 483
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	2 cut(s)	42, 60
BseRI	GAGGAG	2 cut(s)	101, 402
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	208
BshNI	GGYRCC	2 cut(s)	481, 501
BshVI	ATCGAT	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	85
BspACI	CCGC	5 cut(s)	93, 206, 311, 410, 505
BspDI	ATCGAT	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	483, 503
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	481, 501
BsrDI	GCAATG	2 cut(s)	42, 60
BssMI	GATC	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	337, 490
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	85, 434
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	71, 256, 483
BstFNI	CGCG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 479
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	465
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	71, 256, 483
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	331, 415
CviAII	CATG	2 cut(s)	185, 244
CviJI	RGCY	8 cut(s)	12, 30, 84, 89, 166, 205, 304, 563
CviKI_1	RGCY	8 cut(s)	12, 30, 84, 89, 166, 205, 304, 563
CviQI	GTAC	2 cut(s)	331, 415
DdeI	CTNAG	2 cut(s)	85, 434
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	463
FaeI	CATG	2 cut(s)	188, 247
FatI	CATG	2 cut(s)	184, 243
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	206, 411, 505, 564
FokI	GGATG	3 cut(s)	58, 263, 490
Fsp4HI	GCNGC	4 cut(s)	206, 411, 505, 564
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	4 cut(s)	206, 411, 505, 564
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	188, 247
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	3 cut(s)	275, 325, 548
Hpy166II	GTNNAC	4 cut(s)	172, 295, 316, 333
Hpy188I	TCNGA	4 cut(s)	250, 259, 374, 386
Hpy8I	GTNNAC	4 cut(s)	172, 295, 316, 333
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	337, 490
HpyCH4V	TGCA	4 cut(s)	35, 65, 215, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 479
HpyF3I	CTNAG	2 cut(s)	85, 434
Hsp92II	CATG	2 cut(s)	188, 247
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	31, 303, 335, 459
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	241
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	5 cut(s)	110, 113, 182, 311, 362
MluCI	AATT	3 cut(s)	66, 225, 543
MmeI	TCCRAC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	205, 479
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	2 cut(s)	188, 247
NlaIV	GGNNCC	2 cut(s)	483, 503
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	207, 412, 506, 565
PspN4I	GGNNCC	2 cut(s)	483, 503
PspPI	GGNCC	1 cut(s)	440
RsaI	GTAC	2 cut(s)	332, 416
RsaNI	GTAC	2 cut(s)	331, 415
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	4 cut(s)	206, 411, 505, 564
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	66, 225, 543
SsiI	CCGC	5 cut(s)	93, 206, 311, 410, 505
TaaI	ACNGT	2 cut(s)	337, 490
TaqI	TCGA	3 cut(s)	294, 423, 465
TasI	AATT	3 cut(s)	66, 225, 543
TauI	GCSGC	3 cut(s)	208, 413, 507
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	53, 60
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.