FvH4_3g34470

Phosphatidylinositol 4-kinase gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019688
Physical Location & Seq
Reverse (-)
29907119 .. 29907550
432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34470.t1

Sequence Viewer

Length: 432 bp
ATGATATCTTGTGTACTTTTCATATATATATGCAAGTATGGTGATGTGACATTTGAGTGGCTATATTGGGATCAAGCTAAGCTGCCGTATGGCTCGGACGTTGTTGAATACATCAACTCTTTAGATGCTGAGATTGACATACAACTATTGAAGCGTTGTGGGTGGAATATACCTCATGGATGTGCGAGGACTCTACGAATTTCCACCATGCTTCTCAAGAAAAGTGCAAAGAGAGGACTCTCTCCCTTTGACCTCGGAAGCATTCTTTCCAAGACGAGTTGTAATACACTATCTCTCATTGATAAGATCATACAAGAAGCAGAAGTAGCTAGTGAGGCCTCATTTATGAAAACGGTGTCATCCATCATGGAACGACACCTTGCCAACAGATTTGGCGACCTTCAGCCTTGGAAGGGTGAACCAGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase ubiquitin

Protein Analysis

144

Amino Acids

16.16

Weight (kDa)

6.11

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34460 FvH4_3g34470 FvH4_3g34490 FvH4_3g34510 FvH4_3g34520 FvH4_3g34530
rosa_multiflora Rmu_sc0001733.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 107, 151
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 3 cut(s) 77, 82, 329
AluI AGCT 3 cut(s) 77, 82, 329
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 53, 428
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 2 cut(s) 330, 430
BisI GCNGC 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 253, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 253, 407
BseGI GGATG 2 cut(s) 185, 359
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 70, 306
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 253, 407
BssMI GATC 2 cut(s) 70, 306
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 78, 129
BstF5I GGATG 2 cut(s) 185, 359
BstKTI GATC 2 cut(s) 73, 309
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 2 cut(s) 70, 306
BstMWI GCNNNNNNNGC 2 cut(s) 326, 335
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 2 cut(s) 185, 359
Csp6I GTAC 1 cut(s) 14
CviAII CATG 3 cut(s) 176, 208, 367
CviJI RGCY 7 cut(s) 61, 77, 82, 93, 329, 338, 406
CviKI_1 RGCY 7 cut(s) 61, 77, 82, 93, 329, 338, 406
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 78, 129
DpnI GATC 2 cut(s) 72, 308
DpnII GATC 2 cut(s) 70, 306
Eco130I CCWWGG 1 cut(s) 407
Eco147I AGGCCT 1 cut(s) 338
Eco32I GATATC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 3 cut(s) 179, 211, 370
FatI CATG 3 cut(s) 175, 207, 366
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 2 cut(s) 192, 346
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 2 cut(s) 330, 430
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 3 cut(s) 179, 211, 370
HinfI GANTC 2 cut(s) 190, 237
HphI GGTGA 2 cut(s) 53, 428
Hpy166II GTNNAC 2 cut(s) 14, 419
Hpy188I TCNGA 2 cut(s) 97, 257
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 14, 419
HpyAV CCTTC 2 cut(s) 406, 410
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 33, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 335
HpyF3I CTNAG 2 cut(s) 78, 129
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 3 cut(s) 179, 211, 370
Kzo9I GATC 2 cut(s) 70, 306
LpnPI CCDG 1 cut(s) 408
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 330, 430
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 72, 308
MboI GATC 2 cut(s) 70, 306
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 184, 231
MnlI CCTC 6 cut(s) 180, 183, 227, 263, 328, 349
MslI CAYNNNNRTG 2 cut(s) 55, 180
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 326, 335
NdeII GATC 2 cut(s) 70, 306
NlaIII CATG 3 cut(s) 179, 211, 370
NmuCI GTSAC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 338
PctI GAATGC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 2 cut(s) 184, 231
PpsI GAGTC 2 cut(s) 184, 231
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 55, 180
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 70, 306
SchI GAGTC 2 cut(s) 184, 231
ScrFI CCNGG 1 cut(s) 423
SetI ASST 8 cut(s) 79, 84, 102, 175, 255, 331, 381, 402
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 55, 180
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 338
SspMI CTAG 2 cut(s) 330, 430
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 13
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 10, 362
XapI RAATTY 1 cut(s) 198
XspI CTAG 2 cut(s) 330, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.